RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 ZNF816Q0VGE8 651 aaPredicted RBP2.37□□□□□ -2.03
VPS35-203ENST00000562420 FXYD3Q14802 87 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 ESRGQ1W209 222 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 CXCL17Q6UXB2 119 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 ZNF818PQ6ZRF7 136 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 VMO1Q7Z5L0 202 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 WFDC5Q8TCV5 224 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 TMEM263Q8WUH6 116 aaKnown RBP2.37□□□□□ -2.03
VPS35-203ENST00000562420 DIRC1Q969H9 104 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 NABP2Q9BQ15 211 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 Q9H3A6 140 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 XAGE1AQ9HD64 81 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 CELA1Q9UNI1 258 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 PCNTO95613 3336 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 DOCK4Q8N1I0 1966 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 KIAA2026Q5HYC2 2103 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 TMSB15BA0A087X1C1 80 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 TRAV40A0A0B4J280 105 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 ZNF815PA8K554 130 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 C8orf87E5RJ46 101 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 M0R135 149 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 IGKV1-5P01602 117 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 CD28P10747 220 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 IAPPP10997 89 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 CD70P32970 193 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 SPINT3P49223 89 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 UBE2AP49459 152 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 EDDM3BP56851 147 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 BLCAPP62952 87 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 GUSBP11Q6P575 273 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 Q6ZR03 302 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 ZCCHC24Q8N2G6 241 aaKnown RBP2.36□□□□□ -2.03
VPS35-203ENST00000562420 FAM216BQ8N7L0 139 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 C3orf56Q8N813 242 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 NKAPP1Q8N9T2 125 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 FXYD5Q96DB9 178 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 SPACA5Q96QH8 159 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 SMIM14Q96QK8 99 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 CNFNQ9BYD5 112 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 TTTY10Q9BZA0 68 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 C11orf68Q9H3H3 251 aaKnown RBP2.36□□□□□ -2.03
VPS35-203ENST00000562420 LINC00588Q9Y4M8 146 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 MGAMO43451 1857 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 PTPRBP23467 1997 aa2.36□□□□□ -2.03
VPS35-203ENST00000562420 CEP350Q5VT06 3117 aa2.35□□□□□ -2.03
VPS35-203ENST00000562420 TRAV41A0A0B4J266 112 aa2.35□□□□□ -2.03
VPS35-203ENST00000562420 A0A1W2PNU3 283 aaPredicted RBP2.35□□□□□ -2.03
VPS35-203ENST00000562420 TMEM30CPA0ZSE6 113 aa2.35□□□□□ -2.03
VPS35-203ENST00000562420 C11orf86A6NJI1 115 aa2.35□□□□□ -2.03
VPS35-203ENST00000562420 JMJD7-PLA2G4BH0Y9G9 81 aa2.35□□□□□ -2.03
VPS35-203ENST00000562420 ZNF73O43830 326 aaPredicted RBP2.35□□□□□ -2.03
VPS35-203ENST00000562420 IGKV1D-16P01601 117 aa2.35□□□□□ -2.03
VPS35-203ENST00000562420 TRBV12-3P01733 135 aa2.35□□□□□ -2.03
VPS35-203ENST00000562420 IGHV4-34P06331 123 aa2.35□□□□□ -2.03
VPS35-203ENST00000562420 SAA1P0DJI8 122 aaPredicted RBP2.35□□□□□ -2.03
VPS35-203ENST00000562420 CCL4P13236 92 aa2.35□□□□□ -2.03
VPS35-203ENST00000562420 ZNF22P17026 224 aaPredicted RBP2.35□□□□□ -2.03
VPS35-203ENST00000562420 PDE6GP18545 87 aa2.35□□□□□ -2.03
VPS35-203ENST00000562420 CD52P31358 61 aa2.35□□□□□ -2.03
VPS35-203ENST00000562420 TFF3Q07654 80 aa2.35□□□□□ -2.03
VPS35-203ENST00000562420 C6orf99Q4VX62 202 aa2.35□□□□□ -2.03
VPS35-203ENST00000562420 C7orf65Q6ZTY9 151 aa2.35□□□□□ -2.03
VPS35-203ENST00000562420 DYNAPQ8N1N2 210 aa2.35□□□□□ -2.03
VPS35-203ENST00000562420 TMEM141Q96I45 108 aa2.35□□□□□ -2.03
VPS35-203ENST00000562420 LIMD2Q9BT23 127 aa2.35□□□□□ -2.03
VPS35-203ENST00000562420 CCL28Q9NRJ3 127 aa2.35□□□□□ -2.03
VPS35-203ENST00000562420 HTTP42858 3142 aa2.35□□□□□ -2.03
VPS35-203ENST00000562420 BRCA2P51587 3418 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 IGKV1D-42A0A075B6H8 117 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 IGKV1-9A0A0C4DH69 117 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 A0A0J9YXV3 536 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 H0YGX0 51 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 M0R381 172 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 COX7A2LO14548 114 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 DNAL4O96015 105 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 IGKV1-39P01597 117 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 IGKV1D-39P04432 117 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 PRM2P04554 102 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 CCL5P13501 91 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 MIFP14174 115 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 CIRBPQ14011 172 aaKnown RBP2.34□□□□□ -2.03
VPS35-203ENST00000562420 SPANXN1Q5VSR9 72 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 C16orf47Q6ZP98 133 aaPredicted RBP2.34□□□□□ -2.03
VPS35-203ENST00000562420 Q8IYB0 196 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 C20orf197Q8N268 126 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 C6orf223Q8N319 242 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 FAM167A-AS1Q96KT0 104 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 IMMP1LQ96LU5 166 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 OBSCN-AS1Q96MR7 158 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 TIMM17AQ99595 171 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 TMEM14CQ9P0S9 112 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 PHLDA3Q9Y5J5 127 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 ICOSQ9Y6W8 199 aa2.34□□□□□ -2.03
VPS35-203ENST00000562420 PTPRDP23468 1912 aa2.34□□□□□ -2.04
VPS35-203ENST00000562420 CENPFP49454 3210 aa2.34□□□□□ -2.04
VPS35-203ENST00000562420 LRP4O75096 1905 aa2.33□□□□□ -2.04
VPS35-203ENST00000562420 PLXNB3Q9ULL4 1909 aa2.33□□□□□ -2.04
VPS35-203ENST00000562420 ARHGAP21Q5T5U3 1957 aa2.33□□□□□ -2.04
VPS35-203ENST00000562420 IGHV1OR15-1A0A075B7D0 117 aa2.33□□□□□ -2.04
VPS35-203ENST00000562420 IGHV1-45A0A0A0MS14 117 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms