RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 CYSLTR1Q9Y271 337 aa4□□□□□ -1.77
VPS13C-209ENST00000560637 C16orf74Q96GX8 76 aa3.99□□□□□ -1.77
VPS13C-209ENST00000560637 HHLA3Q9XRX5 114 aa3.99□□□□□ -1.77
VPS13C-209ENST00000560637 RBMY1BA6NDE4 496 aaKnown RBP3.99□□□□□ -1.77
VPS13C-209ENST00000560637 RBMY1EA6NEQ0 496 aaKnown RBP3.99□□□□□ -1.77
VPS13C-209ENST00000560637 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.99□□□□□ -1.77
VPS13C-209ENST00000560637 M0R2N4 97 aa3.99□□□□□ -1.77
VPS13C-209ENST00000560637 RBMY1DP0C7P1 496 aaKnown RBP3.99□□□□□ -1.77
VPS13C-209ENST00000560637 SUMO4Q6EEV6 95 aa3.99□□□□□ -1.77
VPS13C-209ENST00000560637 CEMP1Q6PRD7 247 aaPredicted RBP3.99□□□□□ -1.77
VPS13C-209ENST00000560637 FAM231DQ6ZW35 169 aa3.99□□□□□ -1.77
VPS13C-209ENST00000560637 UBE2WQ96B02 151 aa3.99□□□□□ -1.77
VPS13C-209ENST00000560637 TMEM70Q9BUB7 260 aa3.99□□□□□ -1.77
VPS13C-209ENST00000560637 TP53TG1Q9Y2A0 90 aa3.99□□□□□ -1.77
VPS13C-209ENST00000560637 LENEPQ9Y5L5 61 aa3.99□□□□□ -1.77
VPS13C-209ENST00000560637 DEFB131BA0A096LNP1 70 aa3.99□□□□□ -1.77
VPS13C-209ENST00000560637 SMIM27A0A1W2PRY6 76 aa3.99□□□□□ -1.77
VPS13C-209ENST00000560637 IFITM10A6NMD0 228 aa3.99□□□□□ -1.77
VPS13C-209ENST00000560637 TSTD3H0UI37 97 aa3.99□□□□□ -1.77
VPS13C-209ENST00000560637 MALP21145 153 aa3.99□□□□□ -1.77
VPS13C-209ENST00000560637 PTTG1IPP53801 180 aa3.99□□□□□ -1.77
VPS13C-209ENST00000560637 TMEM263Q8WUH6 116 aaKnown RBP3.99□□□□□ -1.77
VPS13C-209ENST00000560637 H7C2G1 150 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 VCYO14598 125 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 GAS8-AS1O95177 125 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 ATP5L2Q7Z4Y8 100 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 LINC00469Q8N7U9 141 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 OR5A1Q8NGJ0 315 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 C14orf144Q96I85 54 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 SPXQ9BT56 116 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 A0A1B0GW15 77 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 RHODO00212 210 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 HBDP02042 147 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 PPBPP02775 128 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 NPC2P61916 151 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 RPL39P62891 51 aaKnown RBP3.98□□□□□ -1.77
VPS13C-209ENST00000560637 MEIG1Q5JSS6 88 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 ZC2HC1BQ5TFG8 222 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 ZNF493Q6ZR52 646 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 TRPT1Q86TN4 253 aaKnown RBP3.98□□□□□ -1.77
VPS13C-209ENST00000560637 C18orf32Q8TCD1 76 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 MLST8Q9BVC4 326 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 STAB2Q8WWQ8 2551 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 SRSF9Q13242 221 aaKnown RBP eCLIP3.98□□□□□ -1.77
VPS13C-209ENST00000560637 LAGE3Q14657 143 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 C2orf66Q6UXQ4 117 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 C1orf158Q8N1D5 194 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 SPATA25Q9BR10 227 aa3.98□□□□□ -1.77
VPS13C-209ENST00000560637 NXT2Q9NPJ8 142 aaKnown RBP3.98□□□□□ -1.77
VPS13C-209ENST00000560637 C19orf71A6NCJ1 209 aa3.97□□□□□ -1.77
VPS13C-209ENST00000560637 CIDEAO60543 219 aa3.97□□□□□ -1.77
VPS13C-209ENST00000560637 PPP1R17O96001 155 aa3.97□□□□□ -1.77
VPS13C-209ENST00000560637 FHL3Q13643 280 aa3.97□□□□□ -1.77
VPS13C-209ENST00000560637 IFI27L1Q96BM0 104 aa3.97□□□□□ -1.77
VPS13C-209ENST00000560637 OPRPNQ99935 248 aaPredicted RBP3.97□□□□□ -1.77
VPS13C-209ENST00000560637 XCL1P47992 114 aa3.97□□□□□ -1.77
VPS13C-209ENST00000560637 RHOHQ15669 191 aa3.97□□□□□ -1.77
VPS13C-209ENST00000560637 Q1RN00 199 aa3.97□□□□□ -1.77
VPS13C-209ENST00000560637 AMTNQ6UX39 209 aa3.97□□□□□ -1.77
VPS13C-209ENST00000560637 Q6ZTC4 211 aa3.97□□□□□ -1.77
VPS13C-209ENST00000560637 ATP6V0E2Q8NHE4 81 aa3.97□□□□□ -1.77
VPS13C-209ENST00000560637 TRBV25-1A0A075B6N4 114 aa3.97□□□□□ -1.77
VPS13C-209ENST00000560637 IGKV2D-24A0A075B6R9 120 aa3.97□□□□□ -1.77
VPS13C-209ENST00000560637 RNASE3P12724 160 aaKnown RBP3.97□□□□□ -1.77
VPS13C-209ENST00000560637 SBSPONQ8IVN8 264 aa3.97□□□□□ -1.77
VPS13C-209ENST00000560637 Q8N976 141 aa3.97□□□□□ -1.77
VPS13C-209ENST00000560637 SMIM12Q96EX1 92 aa3.97□□□□□ -1.77
VPS13C-209ENST00000560637 ALKBH7Q9BT30 221 aaPredicted RBP3.97□□□□□ -1.77
VPS13C-209ENST00000560637 GFRA4Q9GZZ7 299 aa3.97□□□□□ -1.77
VPS13C-209ENST00000560637 SOCS3O14543 225 aa3.96□□□□□ -1.78
VPS13C-209ENST00000560637 RBMY1A1P0DJD3 496 aaKnown RBP3.96□□□□□ -1.78
VPS13C-209ENST00000560637 RBMY1CP0DJD4 496 aa3.96□□□□□ -1.78
VPS13C-209ENST00000560637 HERVK_113P61574 105 aa3.96□□□□□ -1.78
VPS13C-209ENST00000560637 RBMY1FQ15415 496 aaKnown RBP3.96□□□□□ -1.78
VPS13C-209ENST00000560637 VSIG2Q96IQ7 327 aa3.96□□□□□ -1.78
VPS13C-209ENST00000560637 C2orf88Q9BSF0 95 aa3.96□□□□□ -1.78
VPS13C-209ENST00000560637 ZNF580Q9UK33 172 aa3.96□□□□□ -1.78
VPS13C-209ENST00000560637 KLK12Q9UKR0 248 aa3.96□□□□□ -1.78
VPS13C-209ENST00000560637 ORMDL2Q53FV1 153 aa3.96□□□□□ -1.78
VPS13C-209ENST00000560637 C5orf38Q86SI9 138 aa3.96□□□□□ -1.78
VPS13C-209ENST00000560637 MIEN1Q9BRT3 115 aa3.96□□□□□ -1.78
VPS13C-209ENST00000560637 TMEM243Q9BU79 118 aa3.96□□□□□ -1.78
VPS13C-209ENST00000560637 SMIM2Q9BVW6 85 aa3.96□□□□□ -1.78
VPS13C-209ENST00000560637 VWFP04275 2813 aa3.96□□□□□ -1.78
VPS13C-209ENST00000560637 TRAV9-1A0A075B6T8 112 aa3.96□□□□□ -1.78
VPS13C-209ENST00000560637 K7EQD1 137 aa3.96□□□□□ -1.78
VPS13C-209ENST00000560637 NUPR1O60356 82 aa3.96□□□□□ -1.78
VPS13C-209ENST00000560637 ATP5LO75964 103 aa3.96□□□□□ -1.78
VPS13C-209ENST00000560637 HNRNPA3P51991 378 aaKnown RBP3.96□□□□□ -1.78
VPS13C-209ENST00000560637 SFTA2Q6UW10 78 aa3.96□□□□□ -1.78
VPS13C-209ENST00000560637 LINC00173Q6ZV60 143 aa3.96□□□□□ -1.78
VPS13C-209ENST00000560637 SLC25A29Q8N8R3 303 aa3.96□□□□□ -1.78
VPS13C-209ENST00000560637 GATD1Q8NB37 220 aa3.96□□□□□ -1.78
VPS13C-209ENST00000560637 PRSS29PA6NIE9 313 aa3.95□□□□□ -1.78
VPS13C-209ENST00000560637 KLLNB2CW77 178 aa3.95□□□□□ -1.78
VPS13C-209ENST00000560637 I3L3M4 83 aa3.95□□□□□ -1.78
VPS13C-209ENST00000560637 KRTAP10-11P60412 298 aa3.95□□□□□ -1.78
VPS13C-209ENST00000560637 TEX43Q6ZNM6 134 aa3.95□□□□□ -1.78
VPS13C-209ENST00000560637 PRO0255Q9UI72 69 aa3.95□□□□□ -1.78
VPS13C-209ENST00000560637 hDV102S1A0JD36 115 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms