RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 LINC01549A6NIU2 74 aa12.97□□□□□ -0.33
SNX1-208ENST00000559844 TOMM6Q96B49 74 aa12.97□□□□□ -0.33
SNX1-208ENST00000559844 LINC01587Q99440 93 aa12.97□□□□□ -0.33
SNX1-208ENST00000559844 AGRNO00468 2067 aa12.96□□□□□ -0.33
SNX1-208ENST00000559844 VCYO14598 125 aa12.96□□□□□ -0.33
SNX1-208ENST00000559844 HTN1P15515 57 aa12.96□□□□□ -0.33
SNX1-208ENST00000559844 SAMD5Q5TGI4 173 aa12.96□□□□□ -0.33
SNX1-208ENST00000559844 TRPT1Q86TN4 253 aaKnown RBP12.96□□□□□ -0.33
SNX1-208ENST00000559844 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.96□□□□□ -0.34
SNX1-208ENST00000559844 M0R2P5 195 aa12.96□□□□□ -0.34
SNX1-208ENST00000559844 POLR2KP53803 58 aaKnown RBP12.96□□□□□ -0.34
SNX1-208ENST00000559844 NUTF2P61970 127 aaKnown RBP12.96□□□□□ -0.34
SNX1-208ENST00000559844 ODF1Q14990 250 aa12.96□□□□□ -0.34
SNX1-208ENST00000559844 FAM110AQ9BQ89 295 aa12.96□□□□□ -0.34
SNX1-208ENST00000559844 SPXQ9BT56 116 aa12.95□□□□□ -0.34
SNX1-208ENST00000559844 ZMAT4Q9H898 229 aa12.95□□□□□ -0.34
SNX1-208ENST00000559844 DKK2Q9UBU2 259 aa12.95□□□□□ -0.34
SNX1-208ENST00000559844 NOTCH1P46531 2555 aa12.95□□□□□ -0.34
SNX1-208ENST00000559844 SCGB3A1Q96QR1 104 aa12.94□□□□□ -0.34
SNX1-208ENST00000559844 KIR2DL4Q99706 377 aa12.94□□□□□ -0.34
SNX1-208ENST00000559844 A8MWV9 139 aa12.94□□□□□ -0.34
SNX1-208ENST00000559844 M0QY20 66 aa12.94□□□□□ -0.34
SNX1-208ENST00000559844 COX8AP10176 69 aa12.94□□□□□ -0.34
SNX1-208ENST00000559844 H7C1H1 209 aa12.93□□□□□ -0.34
SNX1-208ENST00000559844 C2orf66Q6UXQ4 117 aa12.93□□□□□ -0.34
SNX1-208ENST00000559844 EDA2RQ9HAV5 297 aa12.93□□□□□ -0.34
SNX1-208ENST00000559844 TRAV12-1A0A0B4J245 112 aa12.92□□□□□ -0.34
SNX1-208ENST00000559844 TRBV27A0A0K0K1C4 114 aa12.92□□□□□ -0.34
SNX1-208ENST00000559844 A0A1B0GV90 55 aa12.92□□□□□ -0.34
SNX1-208ENST00000559844 SDHAF1A6NFY7 115 aa12.92□□□□□ -0.34
SNX1-208ENST00000559844 IGKCP01834 107 aa12.92□□□□□ -0.34
SNX1-208ENST00000559844 EGFEM1PQ0D2K5 195 aa12.92□□□□□ -0.34
SNX1-208ENST00000559844 NBEAL1Q6ZS30 2694 aa12.92□□□□□ -0.34
SNX1-208ENST00000559844 A0A087WX48 190 aa12.92□□□□□ -0.34
SNX1-208ENST00000559844 DPM2O94777 84 aa12.92□□□□□ -0.34
SNX1-208ENST00000559844 KRTAP10-11P60412 298 aa12.92□□□□□ -0.34
SNX1-208ENST00000559844 BATFQ16520 125 aa12.91□□□□□ -0.34
SNX1-208ENST00000559844 BEAN1Q3B7T3 259 aa12.91□□□□□ -0.34
SNX1-208ENST00000559844 ANKRD39Q53RE8 183 aa12.91□□□□□ -0.34
SNX1-208ENST00000559844 C11orf72Q8NBR9 251 aa12.91□□□□□ -0.34
SNX1-208ENST00000559844 TMEM208Q9BTX3 173 aa12.91□□□□□ -0.34
SNX1-208ENST00000559844 XCL2Q9UBD3 114 aa12.91□□□□□ -0.34
SNX1-208ENST00000559844 ZFP2Q6ZN57 461 aa12.9□□□□□ -0.34
SNX1-208ENST00000559844 ERASQ7Z444 233 aa12.9□□□□□ -0.34
SNX1-208ENST00000559844 CYSLTR1Q9Y271 337 aa12.9□□□□□ -0.34
SNX1-208ENST00000559844 MORN3Q6PF18 240 aaPredicted RBP12.9□□□□□ -0.34
SNX1-208ENST00000559844 STPG4Q8N801 248 aa12.9□□□□□ -0.34
SNX1-208ENST00000559844 ZMAT5Q9UDW3 170 aaKnown RBP12.9□□□□□ -0.34
SNX1-208ENST00000559844 COL5A1-AS1Q5SY13 56 aa12.89□□□□□ -0.35
SNX1-208ENST00000559844 NEGR1Q7Z3B1 354 aa12.89□□□□□ -0.35
SNX1-208ENST00000559844 RHODO00212 210 aa12.89□□□□□ -0.35
SNX1-208ENST00000559844 GTSCR1Q86UQ5 136 aa12.89□□□□□ -0.35
SNX1-208ENST00000559844 C1orf158Q8N1D5 194 aa12.89□□□□□ -0.35
SNX1-208ENST00000559844 PLNP26678 52 aa12.88□□□□□ -0.35
SNX1-208ENST00000559844 RHOHQ15669 191 aa12.88□□□□□ -0.35
SNX1-208ENST00000559844 KPRPQ5T749 579 aaPredicted RBP12.87□□□□□ -0.35
SNX1-208ENST00000559844 UFSP1Q6NVU6 142 aa12.87□□□□□ -0.35
SNX1-208ENST00000559844 NEXN-AS1Q8NBZ9 246 aa12.87□□□□□ -0.35
SNX1-208ENST00000559844 MRPL35Q9NZE8 188 aaKnown RBP12.87□□□□□ -0.35
SNX1-208ENST00000559844 HHLA3Q9XRX5 114 aa12.87□□□□□ -0.35
SNX1-208ENST00000559844 DLEU1O43261 78 aa12.87□□□□□ -0.35
SNX1-208ENST00000559844 PRM2P04554 102 aa12.87□□□□□ -0.35
SNX1-208ENST00000559844 F8VRH5 84 aa12.86□□□□□ -0.35
SNX1-208ENST00000559844 I3L3M4 83 aa12.86□□□□□ -0.35
SNX1-208ENST00000559844 HINT1P49773 126 aaPredicted RBP12.86□□□□□ -0.35
SNX1-208ENST00000559844 BOD1L2Q8IYS8 172 aa12.86□□□□□ -0.35
SNX1-208ENST00000559844 TMEM141Q96I45 108 aa12.86□□□□□ -0.35
SNX1-208ENST00000559844 C19orf73Q9NVV2 129 aa12.86□□□□□ -0.35
SNX1-208ENST00000559844 TP53TG1Q9Y2A0 90 aa12.86□□□□□ -0.35
SNX1-208ENST00000559844 FGF6P10767 208 aa12.85□□□□□ -0.35
SNX1-208ENST00000559844 CFAP126Q5VTH2 177 aa12.85□□□□□ -0.35
SNX1-208ENST00000559844 BAALCQ8WXS3 180 aa12.85□□□□□ -0.35
SNX1-208ENST00000559844 C1QTNF4Q9BXJ3 329 aa12.85□□□□□ -0.35
SNX1-208ENST00000559844 CHTOPQ9Y3Y2 248 aaKnown RBP12.85□□□□□ -0.35
SNX1-208ENST00000559844 TIMM17AQ99595 171 aa12.85□□□□□ -0.35
SNX1-208ENST00000559844 TP73-AS1Q9UF72 201 aa12.85□□□□□ -0.35
SNX1-208ENST00000559844 IGHV3OR16-12A0A075B7B8 117 aa12.84□□□□□ -0.35
SNX1-208ENST00000559844 SIVA1O15304 175 aa12.84□□□□□ -0.35
SNX1-208ENST00000559844 RS1O15537 224 aa12.84□□□□□ -0.35
SNX1-208ENST00000559844 PRB2P02812 416 aaPredicted RBP12.84□□□□□ -0.35
SNX1-208ENST00000559844 IL17DQ8TAD2 202 aa12.84□□□□□ -0.35
SNX1-208ENST00000559844 WFDC10AQ9H1F0 79 aa12.84□□□□□ -0.35
SNX1-208ENST00000559844 MRPL16Q9NX20 251 aaKnown RBP12.84□□□□□ -0.35
SNX1-208ENST00000559844 IGHV3-73A0A0B4J1V6 119 aa12.83□□□□□ -0.35
SNX1-208ENST00000559844 AZU1P20160 251 aa12.83□□□□□ -0.35
SNX1-208ENST00000559844 NMUP48645 174 aa12.83□□□□□ -0.35
SNX1-208ENST00000559844 ZC2HC1BQ5TFG8 222 aa12.83□□□□□ -0.35
SNX1-208ENST00000559844 IGIPA6NJ69 53 aa12.83□□□□□ -0.36
SNX1-208ENST00000559844 RNASE8Q8TDE3 154 aaKnown RBP12.83□□□□□ -0.36
SNX1-208ENST00000559844 TMEM263Q8WUH6 116 aaKnown RBP12.83□□□□□ -0.36
SNX1-208ENST00000559844 TNFRSF18Q9Y5U5 241 aa12.83□□□□□ -0.36
SNX1-208ENST00000559844 TSHBP01222 138 aa12.82□□□□□ -0.36
SNX1-208ENST00000559844 C2orf91Q6ZV80 131 aa12.82□□□□□ -0.36
SNX1-208ENST00000559844 DNAJC30Q96LL9 226 aa12.81□□□□□ -0.36
SNX1-208ENST00000559844 PRSS29PA6NIE9 313 aa12.81□□□□□ -0.36
SNX1-208ENST00000559844 IGHV3-53P01767 116 aa12.81□□□□□ -0.36
SNX1-208ENST00000559844 MPV17L2Q567V2 206 aa12.81□□□□□ -0.36
SNX1-208ENST00000559844 RPL35AP18077 110 aaKnown RBP12.8□□□□□ -0.36
SNX1-208ENST00000559844 TCTAP57738 103 aa12.8□□□□□ -0.36
SNX1-208ENST00000559844 DNAH3Q8TD57 4116 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms