RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 MAP6D1Q9H9H5 199 aa7.81□□□□□ -1.16
CUX1-217ENST00000558836 P0DMU3 169 aa7.8□□□□□ -1.16
CUX1-217ENST00000558836 FAM231AP0DMU4 169 aa7.8□□□□□ -1.16
CUX1-217ENST00000558836 FAM231CP0DMU5 169 aa7.8□□□□□ -1.16
CUX1-217ENST00000558836 TOMM6Q96B49 74 aa7.8□□□□□ -1.16
CUX1-217ENST00000558836 ODF3Q96PU9 254 aa7.8□□□□□ -1.16
CUX1-217ENST00000558836 NAA38Q9BRA0 125 aaKnown RBP7.8□□□□□ -1.16
CUX1-217ENST00000558836 Q9UF83 564 aa7.8□□□□□ -1.16
CUX1-217ENST00000558836 IGHV3OR16-12A0A075B7B8 117 aa7.8□□□□□ -1.16
CUX1-217ENST00000558836 A0A087WX48 190 aa7.8□□□□□ -1.16
CUX1-217ENST00000558836 HLA-DRB4P13762 266 aa7.8□□□□□ -1.16
CUX1-217ENST00000558836 VAMP3Q15836 100 aa7.8□□□□□ -1.16
CUX1-217ENST00000558836 TMEM97Q5BJF2 176 aa7.8□□□□□ -1.16
CUX1-217ENST00000558836 MORN3Q6PF18 240 aaPredicted RBP7.8□□□□□ -1.16
CUX1-217ENST00000558836 HLA-DRB4X5D2U9 266 aa7.8□□□□□ -1.16
CUX1-217ENST00000558836 TAX1BP3O14907 124 aa7.8□□□□□ -1.16
CUX1-217ENST00000558836 TP53TG1Q9Y2A0 90 aa7.8□□□□□ -1.16
CUX1-217ENST00000558836 TENM1Q9UKZ4 2725 aa7.79□□□□□ -1.16
CUX1-217ENST00000558836 CCL24O00175 119 aa7.79□□□□□ -1.16
CUX1-217ENST00000558836 ZFP2Q6ZN57 461 aa7.79□□□□□ -1.16
CUX1-217ENST00000558836 MAPKAPK5-AS1Q8N8E1 139 aa7.79□□□□□ -1.16
CUX1-217ENST00000558836 LINC01006Q8NI28 216 aa7.79□□□□□ -1.16
CUX1-217ENST00000558836 BAALCQ8WXS3 180 aa7.79□□□□□ -1.16
CUX1-217ENST00000558836 XCL2Q9UBD3 114 aa7.79□□□□□ -1.16
CUX1-217ENST00000558836 M0QY20 66 aa7.79□□□□□ -1.16
CUX1-217ENST00000558836 POLR2KP53803 58 aaKnown RBP7.79□□□□□ -1.16
CUX1-217ENST00000558836 SYT8Q8NBV8 401 aa7.79□□□□□ -1.16
CUX1-217ENST00000558836 OPRPNQ99935 248 aaPredicted RBP7.79□□□□□ -1.16
CUX1-217ENST00000558836 PRSS29PA6NIE9 313 aa7.78□□□□□ -1.16
CUX1-217ENST00000558836 TMEM86BQ8N661 226 aa7.78□□□□□ -1.16
CUX1-217ENST00000558836 POM121L12Q8N7R1 296 aa7.78□□□□□ -1.16
CUX1-217ENST00000558836 LINC01587Q99440 93 aa7.78□□□□□ -1.16
CUX1-217ENST00000558836 TSHBP01222 138 aa7.78□□□□□ -1.16
CUX1-217ENST00000558836 HERV-K104P63124 156 aa7.78□□□□□ -1.16
CUX1-217ENST00000558836 NEXN-AS1Q8NBZ9 246 aa7.78□□□□□ -1.16
CUX1-217ENST00000558836 PGPEP1Q9NXJ5 209 aa7.78□□□□□ -1.16
CUX1-217ENST00000558836 F8VRH5 84 aa7.77□□□□□ -1.16
CUX1-217ENST00000558836 RAB37Q96AX2 223 aa7.77□□□□□ -1.16
CUX1-217ENST00000558836 KIR2DL4Q99706 377 aa7.77□□□□□ -1.16
CUX1-217ENST00000558836 TRRAPQ9Y4A5 3859 aa7.77□□□□□ -1.17
CUX1-217ENST00000558836 H7C1H1 209 aa7.77□□□□□ -1.17
CUX1-217ENST00000558836 VCYO14598 125 aa7.77□□□□□ -1.17
CUX1-217ENST00000558836 ODF3L2Q3SX64 289 aa7.77□□□□□ -1.17
CUX1-217ENST00000558836 OCIAD2Q56VL3 154 aa7.77□□□□□ -1.17
CUX1-217ENST00000558836 PPP1R17O96001 155 aa7.77□□□□□ -1.17
CUX1-217ENST00000558836 CRYBA4P53673 196 aa7.77□□□□□ -1.17
CUX1-217ENST00000558836 WFDC10AQ9H1F0 79 aa7.77□□□□□ -1.17
CUX1-217ENST00000558836 CST9LQ9H4G1 147 aa7.77□□□□□ -1.17
CUX1-217ENST00000558836 CYSLTR1Q9Y271 337 aa7.77□□□□□ -1.17
CUX1-217ENST00000558836 ATRQ13535 2644 aa7.76□□□□□ -1.17
CUX1-217ENST00000558836 TRGV11A0A075B6L2 103 aa7.76□□□□□ -1.17
CUX1-217ENST00000558836 TRBV25-1A0A075B6N4 114 aa7.76□□□□□ -1.17
CUX1-217ENST00000558836 SAP30O75446 220 aa7.76□□□□□ -1.17
CUX1-217ENST00000558836 AZU1P20160 251 aa7.76□□□□□ -1.17
CUX1-217ENST00000558836 GCSHP23434 173 aa7.76□□□□□ -1.17
CUX1-217ENST00000558836 NSUN5P1Q3KNT7 163 aa7.76□□□□□ -1.17
CUX1-217ENST00000558836 NSD1Q96L73 2696 aaPredicted RBP7.76□□□□□ -1.17
CUX1-217ENST00000558836 HIVEP1P15822 2718 aa7.76□□□□□ -1.17
CUX1-217ENST00000558836 Q6ZSN1 163 aa7.76□□□□□ -1.17
CUX1-217ENST00000558836 SPAG8Q99932 426 aaPredicted RBP7.76□□□□□ -1.17
CUX1-217ENST00000558836 MRPL16Q9NX20 251 aaKnown RBP7.76□□□□□ -1.17
CUX1-217ENST00000558836 AMMECR1LQ6DCA0 310 aa7.75□□□□□ -1.17
CUX1-217ENST00000558836 PLNP26678 52 aa7.75□□□□□ -1.17
CUX1-217ENST00000558836 TRBV27A0A0K0K1C4 114 aa7.74□□□□□ -1.17
CUX1-217ENST00000558836 IGIPA6NJ69 53 aa7.74□□□□□ -1.17
CUX1-217ENST00000558836 JMJD8Q96S16 334 aa7.74□□□□□ -1.17
CUX1-217ENST00000558836 TRAV26-1A0A087WT03 109 aa7.74□□□□□ -1.17
CUX1-217ENST00000558836 FHL3Q13643 280 aa7.74□□□□□ -1.17
CUX1-217ENST00000558836 CHAC1Q9BUX1 264 aa7.74□□□□□ -1.17
CUX1-217ENST00000558836 TRAV12-1A0A0B4J245 112 aa7.74□□□□□ -1.17
CUX1-217ENST00000558836 FXYD2P54710 66 aa7.74□□□□□ -1.17
CUX1-217ENST00000558836 RIPPLY3P57055 190 aa7.74□□□□□ -1.17
CUX1-217ENST00000558836 HSD52Q0P140 79 aa7.74□□□□□ -1.17
CUX1-217ENST00000558836 STHQ8IWL8 128 aa7.74□□□□□ -1.17
CUX1-217ENST00000558836 C11orf86A6NJI1 115 aa7.73□□□□□ -1.17
CUX1-217ENST00000558836 K7ERJ3 54 aa7.73□□□□□ -1.17
CUX1-217ENST00000558836 RNASE1P07998 156 aaKnown RBP7.73□□□□□ -1.17
CUX1-217ENST00000558836 CEMP1Q6PRD7 247 aaPredicted RBP7.73□□□□□ -1.17
CUX1-217ENST00000558836 TRPT1Q86TN4 253 aaKnown RBP7.73□□□□□ -1.17
CUX1-217ENST00000558836 TEX29Q8N6K0 151 aa7.73□□□□□ -1.17
CUX1-217ENST00000558836 TSSC4Q9Y5U2 329 aaPredicted RBP7.73□□□□□ -1.17
CUX1-217ENST00000558836 IGHV3-38A0A0C4DH36 116 aa7.73□□□□□ -1.17
CUX1-217ENST00000558836 K7ERU9 68 aa7.73□□□□□ -1.17
CUX1-217ENST00000558836 OR11H12B2RN74 326 aa7.72□□□□□ -1.17
CUX1-217ENST00000558836 RNASE13Q5GAN3 156 aaKnown RBP7.72□□□□□ -1.17
CUX1-217ENST00000558836 TEP1Q99973 2627 aaKnown RBP7.72□□□□□ -1.17
CUX1-217ENST00000558836 TRBV6-5A0A0K0K1A5 114 aa7.72□□□□□ -1.17
CUX1-217ENST00000558836 H3BUT2 72 aa7.72□□□□□ -1.17
CUX1-217ENST00000558836 M0R2P5 195 aa7.72□□□□□ -1.17
CUX1-217ENST00000558836 SIVA1O15304 175 aa7.72□□□□□ -1.17
CUX1-217ENST00000558836 INSP01308 110 aa7.72□□□□□ -1.17
CUX1-217ENST00000558836 PRADC1Q9BSG0 188 aa7.72□□□□□ -1.17
CUX1-217ENST00000558836 IGLV4-69A0A075B6H9 119 aa7.71□□□□□ -1.17
CUX1-217ENST00000558836 A8MTW9 85 aa7.71□□□□□ -1.17
CUX1-217ENST00000558836 SEC11AP67812 179 aa7.71□□□□□ -1.17
CUX1-217ENST00000558836 CFAP126Q5VTH2 177 aa7.71□□□□□ -1.17
CUX1-217ENST00000558836 C11orf72Q8NBR9 251 aa7.71□□□□□ -1.17
CUX1-217ENST00000558836 OR11H2Q8NH07 326 aa7.71□□□□□ -1.17
CUX1-217ENST00000558836 PHLDA1Q8WV24 401 aaPredicted RBP7.71□□□□□ -1.17
CUX1-217ENST00000558836 TRAV2A0A0B4J234 112 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms