RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 NIPBLQ6KC79 2804 aaeCLIP3.64□□□□□ -1.83
LIMA1-214ENST00000552783 PRRC2AP48634 2157 aaKnown RBP3.64□□□□□ -1.83
LIMA1-214ENST00000552783 IGHV4-39P01824 125 aa3.63□□□□□ -1.83
LIMA1-214ENST00000552783 NDUFV3P56181 108 aaKnown RBP3.63□□□□□ -1.83
LIMA1-214ENST00000552783 GAGE5Q13069 117 aa3.63□□□□□ -1.83
LIMA1-214ENST00000552783 GAGE6Q13070 117 aa3.63□□□□□ -1.83
LIMA1-214ENST00000552783 FAM110DQ8TAY7 271 aaPredicted RBP3.63□□□□□ -1.83
LIMA1-214ENST00000552783 TMEM190Q8WZ59 177 aa3.63□□□□□ -1.83
LIMA1-214ENST00000552783 RHODO00212 210 aa3.63□□□□□ -1.83
LIMA1-214ENST00000552783 IGHV3-33P01772 117 aa3.63□□□□□ -1.83
LIMA1-214ENST00000552783 BLCAPP62952 87 aa3.63□□□□□ -1.83
LIMA1-214ENST00000552783 ITLN2Q8WWU7 325 aaPredicted RBP3.63□□□□□ -1.83
LIMA1-214ENST00000552783 PIMREGQ9BSJ6 248 aa3.63□□□□□ -1.83
LIMA1-214ENST00000552783 VCX2Q9H322 139 aa3.63□□□□□ -1.83
LIMA1-214ENST00000552783 DPH3P1Q9H4G8 78 aa3.63□□□□□ -1.83
LIMA1-214ENST00000552783 KIF25-AS1Q9Y6Z4 181 aa3.63□□□□□ -1.83
LIMA1-214ENST00000552783 FN1P02751 2386 aaKnown RBP3.63□□□□□ -1.83
LIMA1-214ENST00000552783 NBPF19A0A087WUL8 3843 aa3.63□□□□□ -1.83
LIMA1-214ENST00000552783 UTP20O75691 2785 aaKnown RBP3.63□□□□□ -1.83
LIMA1-214ENST00000552783 TRAV2A0A0B4J234 112 aa3.63□□□□□ -1.83
LIMA1-214ENST00000552783 CENPVL3A0A0U1RRI6 287 aa3.63□□□□□ -1.83
LIMA1-214ENST00000552783 OOSP1A8MZH6 123 aa3.63□□□□□ -1.83
LIMA1-214ENST00000552783 C19orf84I3L1E1 186 aa3.63□□□□□ -1.83
LIMA1-214ENST00000552783 MUSTN1Q8IVN3 82 aa3.63□□□□□ -1.83
LIMA1-214ENST00000552783 TMEM263Q8WUH6 116 aaKnown RBP3.63□□□□□ -1.83
LIMA1-214ENST00000552783 ZNF256Q9Y2P7 627 aaPredicted RBP3.63□□□□□ -1.83
LIMA1-214ENST00000552783 MOB4Q9Y3A3 225 aa3.63□□□□□ -1.83
LIMA1-214ENST00000552783 DOPEY1Q5JWR5 2465 aa3.62□□□□□ -1.83
LIMA1-214ENST00000552783 IGHV4-61A0A0C4DH41 118 aa3.62□□□□□ -1.83
LIMA1-214ENST00000552783 A8MZ25 164 aa3.62□□□□□ -1.83
LIMA1-214ENST00000552783 J3QQQ9 107 aa3.62□□□□□ -1.83
LIMA1-214ENST00000552783 IGHV4-38-2P0DP08 117 aa3.62□□□□□ -1.83
LIMA1-214ENST00000552783 ASIPP42127 132 aa3.62□□□□□ -1.83
LIMA1-214ENST00000552783 SUMO4Q6EEV6 95 aa3.62□□□□□ -1.83
LIMA1-214ENST00000552783 FAM159AQ6UWV7 190 aa3.62□□□□□ -1.83
LIMA1-214ENST00000552783 SMIM20Q8N5G0 67 aa3.62□□□□□ -1.83
LIMA1-214ENST00000552783 ITPR1Q14643 2758 aa3.62□□□□□ -1.83
LIMA1-214ENST00000552783 TRAV12-3A0A0B4J271 114 aa3.62□□□□□ -1.83
LIMA1-214ENST00000552783 NPC2P61916 151 aa3.62□□□□□ -1.83
LIMA1-214ENST00000552783 PMVKQ15126 192 aa3.62□□□□□ -1.83
LIMA1-214ENST00000552783 TTC32Q5I0X7 151 aa3.62□□□□□ -1.83
LIMA1-214ENST00000552783 RHPN1-AS1Q9BWJ2 59 aa3.62□□□□□ -1.83
LIMA1-214ENST00000552783 U3KQE9 123 aa3.62□□□□□ -1.83
LIMA1-214ENST00000552783 POLR2KP53803 58 aaKnown RBP3.62□□□□□ -1.83
LIMA1-214ENST00000552783 HERV-K104P63124 156 aa3.62□□□□□ -1.83
LIMA1-214ENST00000552783 ZNF56Q15929 161 aa3.62□□□□□ -1.83
LIMA1-214ENST00000552783 SIRPDQ9H106 197 aa3.62□□□□□ -1.83
LIMA1-214ENST00000552783 MXRA5Q9NR99 2828 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 TRAV12-2A0A075B6T6 113 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 TRBV7-1A0A0A6YYK4 115 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 SDHAF1A6NFY7 115 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 TRIAP1O43715 76 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 BRI3O95415 125 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 GAGE2BQ13066 116 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 FBXL19-AS1Q494R0 122 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 ZNF876PQ49A33 203 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 GAGE2EQ4V326 116 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 ADAMTSL4-AS1Q5T5F5 129 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 C11orf44Q8N8P7 122 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 LINC00477Q96M19 166 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 GAGE2DQ9UEU5 116 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 Q9UF83 564 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 TRAV21A0A0B4J279 112 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 IGHV1-69DA0A0B4J2H0 117 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 TRBV7-9A0A0J9YWB2 115 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 SOCS3O14543 225 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 IGHV1-69P01742 117 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 P0DMU3 169 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 FAM231AP0DMU4 169 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 FAM231CP0DMU5 169 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 LMO4P61968 165 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 EBI3Q14213 229 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 RNASE13Q5GAN3 156 aaKnown RBP3.61□□□□□ -1.83
LIMA1-214ENST00000552783 CEMP1Q6PRD7 247 aaPredicted RBP3.61□□□□□ -1.83
LIMA1-214ENST00000552783 DUX3Q96PT4 197 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 FBN2P35556 2912 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 IGHV3OR16-12A0A075B7B8 117 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 TRAV8-3A0A0A6YYJ7 113 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 IGHV3-73A0A0B4J1V6 119 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 A0A0J9YXV3 536 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 RPL32P62910 135 aaKnown RBP3.61□□□□□ -1.83
LIMA1-214ENST00000552783 LINC01620Q4KN68 170 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 C15orf53Q8NAA6 179 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 CLEC2BQ92478 149 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 FAM104AQ969W3 186 aa3.61□□□□□ -1.83
LIMA1-214ENST00000552783 IGHV4-30-2A0A087WSY4 118 aa3.6□□□□□ -1.83
LIMA1-214ENST00000552783 SNCGO76070 127 aa3.6□□□□□ -1.83
LIMA1-214ENST00000552783 C11orf71Q6IPW1 123 aa3.6□□□□□ -1.83
LIMA1-214ENST00000552783 C9orf139Q6ZV77 190 aa3.6□□□□□ -1.83
LIMA1-214ENST00000552783 C5orf56Q8N8D9 126 aa3.6□□□□□ -1.83
LIMA1-214ENST00000552783 CHCHD5Q9BSY4 110 aa3.6□□□□□ -1.83
LIMA1-214ENST00000552783 TMEM223A0PJW6 202 aa3.6□□□□□ -1.83
LIMA1-214ENST00000552783 GAGE12JA6NER3 117 aa3.6□□□□□ -1.83
LIMA1-214ENST00000552783 GAGE7O76087 117 aa3.6□□□□□ -1.83
LIMA1-214ENST00000552783 GAGE12FP0CL80 117 aa3.6□□□□□ -1.83
LIMA1-214ENST00000552783 GAGE12GP0CL81 117 aa3.6□□□□□ -1.83
LIMA1-214ENST00000552783 GAGE12IP0CL82 117 aa3.6□□□□□ -1.83
LIMA1-214ENST00000552783 ZNF22P17026 224 aaPredicted RBP3.6□□□□□ -1.83
LIMA1-214ENST00000552783 LGALS3P17931 250 aaKnown RBP3.6□□□□□ -1.83
LIMA1-214ENST00000552783 GAGE4Q13068 117 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms