RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 NUPR2A6NF83 97 aa11.25□□□□□ -0.61
PRPF40A-212ENST00000545856 PRSS47A8MTI9 375 aa11.25□□□□□ -0.61
PRPF40A-212ENST00000545856 PAX4O43316 350 aa11.25□□□□□ -0.61
PRPF40A-212ENST00000545856 OR10J3Q5JRS4 329 aa11.25□□□□□ -0.61
PRPF40A-212ENST00000545856 C15orf53Q8NAA6 179 aa11.25□□□□□ -0.61
PRPF40A-212ENST00000545856 K7EMI3 77 aa11.24□□□□□ -0.61
PRPF40A-212ENST00000545856 TMEM97Q5BJF2 176 aa11.24□□□□□ -0.61
PRPF40A-212ENST00000545856 NRACQ8N912 160 aa11.24□□□□□ -0.61
PRPF40A-212ENST00000545856 ALKBH7Q9BT30 221 aaPredicted RBP11.24□□□□□ -0.61
PRPF40A-212ENST00000545856 TNFRSF18Q9Y5U5 241 aa11.24□□□□□ -0.61
PRPF40A-212ENST00000545856 TNFRSF6BO95407 300 aa11.23□□□□□ -0.61
PRPF40A-212ENST00000545856 TRGC2P03986 189 aa11.23□□□□□ -0.61
PRPF40A-212ENST00000545856 LINC00694P0DN24 101 aa11.23□□□□□ -0.61
PRPF40A-212ENST00000545856 SUMO2P61956 95 aaKnown RBP11.23□□□□□ -0.61
PRPF40A-212ENST00000545856 MRPL23Q16540 153 aaKnown RBP11.23□□□□□ -0.61
PRPF40A-212ENST00000545856 DAZ4Q86SG3 579 aaKnown RBP11.23□□□□□ -0.61
PRPF40A-212ENST00000545856 PHLDA1Q8WV24 401 aaPredicted RBP11.23□□□□□ -0.61
PRPF40A-212ENST00000545856 ST20Q9HBF5 79 aa11.23□□□□□ -0.61
PRPF40A-212ENST00000545856 DAZ3Q9NR90 486 aaKnown RBP11.23□□□□□ -0.61
PRPF40A-212ENST00000545856 ICOSQ9Y6W8 199 aa11.23□□□□□ -0.61
PRPF40A-212ENST00000545856 HTN3P15516 51 aa11.22□□□□□ -0.61
PRPF40A-212ENST00000545856 Q6ZSN1 163 aa11.22□□□□□ -0.61
PRPF40A-212ENST00000545856 NEXN-AS1Q8NBZ9 246 aa11.22□□□□□ -0.61
PRPF40A-212ENST00000545856 WWC2-AS2Q96NR7 200 aa11.22□□□□□ -0.61
PRPF40A-212ENST00000545856 MAP1LC3AQ9H492 121 aa11.22□□□□□ -0.61
PRPF40A-212ENST00000545856 KLK5Q9Y337 293 aaPredicted RBP11.22□□□□□ -0.61
PRPF40A-212ENST00000545856 DYNC2H1Q8NCM8 4307 aaKnown RBP11.21□□□□□ -0.61
PRPF40A-212ENST00000545856 TRAV26-2A0A0B4J265 109 aa11.21□□□□□ -0.61
PRPF40A-212ENST00000545856 TRBV27A0A0K0K1C4 114 aa11.21□□□□□ -0.61
PRPF40A-212ENST00000545856 C1orf196B1AJZ1 125 aa11.21□□□□□ -0.61
PRPF40A-212ENST00000545856 SRIP30626 198 aa11.21□□□□□ -0.61
PRPF40A-212ENST00000545856 TIRAPP58753 221 aa11.21□□□□□ -0.61
PRPF40A-212ENST00000545856 VSIG2Q96IQ7 327 aa11.21□□□□□ -0.61
PRPF40A-212ENST00000545856 NXT2Q9NPJ8 142 aaKnown RBP11.21□□□□□ -0.61
PRPF40A-212ENST00000545856 SDHAF1A6NFY7 115 aa11.2□□□□□ -0.62
PRPF40A-212ENST00000545856 VCYO14598 125 aa11.2□□□□□ -0.62
PRPF40A-212ENST00000545856 NCR2O95944 276 aa11.2□□□□□ -0.62
PRPF40A-212ENST00000545856 GYPEP15421 78 aa11.2□□□□□ -0.62
PRPF40A-212ENST00000545856 PMCHP20382 165 aa11.2□□□□□ -0.62
PRPF40A-212ENST00000545856 POLR2KP53803 58 aaKnown RBP11.2□□□□□ -0.62
PRPF40A-212ENST00000545856 UBE2D3P61077 147 aa11.2□□□□□ -0.62
PRPF40A-212ENST00000545856 UBE2D2P62837 147 aa11.2□□□□□ -0.62
PRPF40A-212ENST00000545856 NPYP01303 97 aa11.19□□□□□ -0.62
PRPF40A-212ENST00000545856 RAB5BP61020 215 aa11.19□□□□□ -0.62
PRPF40A-212ENST00000545856 CEMP1Q6PRD7 247 aaPredicted RBP11.19□□□□□ -0.62
PRPF40A-212ENST00000545856 TMEM70Q9BUB7 260 aa11.19□□□□□ -0.62
PRPF40A-212ENST00000545856 SMIM2Q9BVW6 85 aa11.19□□□□□ -0.62
PRPF40A-212ENST00000545856 SMKR1H3BMG3 65 aa11.18□□□□□ -0.62
PRPF40A-212ENST00000545856 Q0VG73 95 aa11.18□□□□□ -0.62
PRPF40A-212ENST00000545856 KIAA1644Q3SXP7 199 aa11.18□□□□□ -0.62
PRPF40A-212ENST00000545856 ZNRF2Q8NHG8 242 aa11.18□□□□□ -0.62
PRPF40A-212ENST00000545856 RPL39LQ96EH5 51 aaKnown RBP11.18□□□□□ -0.62
PRPF40A-212ENST00000545856 KIR2DL4Q99706 377 aa11.18□□□□□ -0.62
PRPF40A-212ENST00000545856 I3L3M4 83 aa11.17□□□□□ -0.62
PRPF40A-212ENST00000545856 G0S2P27469 103 aa11.17□□□□□ -0.62
PRPF40A-212ENST00000545856 NEGR1Q7Z3B1 354 aa11.17□□□□□ -0.62
PRPF40A-212ENST00000545856 Q8N8P6 123 aa11.17□□□□□ -0.62
PRPF40A-212ENST00000545856 C18orf32Q8TCD1 76 aa11.17□□□□□ -0.62
PRPF40A-212ENST00000545856 GTSF1LQ9H1H1 148 aa11.17□□□□□ -0.62
PRPF40A-212ENST00000545856 LINC01549A6NIU2 74 aa11.16□□□□□ -0.62
PRPF40A-212ENST00000545856 ATP6V0E2Q8NHE4 81 aa11.16□□□□□ -0.62
PRPF40A-212ENST00000545856 MUC7Q8TAX7 377 aa11.16□□□□□ -0.62
PRPF40A-212ENST00000545856 A0A096LPF7 62 aa11.16□□□□□ -0.62
PRPF40A-212ENST00000545856 A0A0J9YY99 117 aa11.16□□□□□ -0.62
PRPF40A-212ENST00000545856 GAGE12JA6NER3 117 aa11.16□□□□□ -0.62
PRPF40A-212ENST00000545856 P0DMU3 169 aa11.16□□□□□ -0.62
PRPF40A-212ENST00000545856 FAM231AP0DMU4 169 aa11.16□□□□□ -0.62
PRPF40A-212ENST00000545856 FAM231CP0DMU5 169 aa11.16□□□□□ -0.62
PRPF40A-212ENST00000545856 GAGE1Q13065 139 aa11.16□□□□□ -0.62
PRPF40A-212ENST00000545856 GAGE4Q13068 117 aa11.16□□□□□ -0.62
PRPF40A-212ENST00000545856 GAGE5Q13069 117 aa11.16□□□□□ -0.62
PRPF40A-212ENST00000545856 GAGE13Q4V321 117 aa11.16□□□□□ -0.62
PRPF40A-212ENST00000545856 CSMD3Q7Z407 3707 aa11.15□□□□□ -0.63
PRPF40A-212ENST00000545856 LINC01546A6NGU7 62 aa11.15□□□□□ -0.63
PRPF40A-212ENST00000545856 HIST1H2BKO60814 126 aa11.15□□□□□ -0.63
PRPF40A-212ENST00000545856 GAS8-AS1O95177 125 aa11.15□□□□□ -0.63
PRPF40A-212ENST00000545856 HIST1H2BJP06899 126 aa11.15□□□□□ -0.63
PRPF40A-212ENST00000545856 HIST1H2BOP23527 126 aa11.15□□□□□ -0.63
PRPF40A-212ENST00000545856 HIST1H2BBP33778 126 aa11.15□□□□□ -0.63
PRPF40A-212ENST00000545856 HIST1H2BDP58876 126 aa11.15□□□□□ -0.63
PRPF40A-212ENST00000545856 HIST1H2BCP62807 126 aa11.15□□□□□ -0.63
PRPF40A-212ENST00000545856 COTL1Q14019 142 aa11.15□□□□□ -0.63
PRPF40A-212ENST00000545856 HIST2H2BEQ16778 126 aa11.15□□□□□ -0.63
PRPF40A-212ENST00000545856 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.15□□□□□ -0.63
PRPF40A-212ENST00000545856 HIST1H2BHQ93079 126 aa11.15□□□□□ -0.63
PRPF40A-212ENST00000545856 HIST1H2BNQ99877 126 aa11.15□□□□□ -0.63
PRPF40A-212ENST00000545856 HIST1H2BMQ99879 126 aa11.15□□□□□ -0.63
PRPF40A-212ENST00000545856 IGLV2-18A0A075B6J9 118 aa11.14□□□□□ -0.63
PRPF40A-212ENST00000545856 C3orf84H3BNL1 204 aa11.14□□□□□ -0.63
PRPF40A-212ENST00000545856 PKIAP61925 76 aa11.14□□□□□ -0.63
PRPF40A-212ENST00000545856 ORMDL2Q53FV1 153 aa11.14□□□□□ -0.63
PRPF40A-212ENST00000545856 PRSS3P2Q8NHM4 247 aa11.14□□□□□ -0.63
PRPF40A-212ENST00000545856 CHCHD1Q96BP2 118 aaKnown RBP11.14□□□□□ -0.63
PRPF40A-212ENST00000545856 SMAGPQ0VAQ4 97 aa11.13□□□□□ -0.63
PRPF40A-212ENST00000545856 COA6Q5JTJ3 125 aaKnown RBP11.13□□□□□ -0.63
PRPF40A-212ENST00000545856 FA2HQ7L5A8 372 aa11.13□□□□□ -0.63
PRPF40A-212ENST00000545856 AP5S1Q9NUS5 200 aa11.13□□□□□ -0.63
PRPF40A-212ENST00000545856 LOC100131303A0A0U1RQF7 123 aa11.12□□□□□ -0.63
PRPF40A-212ENST00000545856 IGLL5B9A064 214 aa11.12□□□□□ -0.63
PRPF40A-212ENST00000545856 FCER1GP30273 86 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 143.9 ms