RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 C11orf86A6NJI1 115 aa13.22□□□□□ -0.29
VIM-209ENST00000544301 DEFB114Q30KQ6 69 aa13.22□□□□□ -0.29
VIM-209ENST00000544301 GTF2H5Q6ZYL4 71 aa13.22□□□□□ -0.29
VIM-209ENST00000544301 MAP6D1Q9H9H5 199 aa13.22□□□□□ -0.29
VIM-209ENST00000544301 DNAJC9-AS1A6NH13 148 aa13.21□□□□□ -0.29
VIM-209ENST00000544301 K7ERJ3 54 aa13.21□□□□□ -0.29
VIM-209ENST00000544301 RHOHQ15669 191 aa13.21□□□□□ -0.29
VIM-209ENST00000544301 NSUN5P1Q3KNT7 163 aa13.21□□□□□ -0.29
VIM-209ENST00000544301 PHLDA1Q8WV24 401 aaPredicted RBP13.21□□□□□ -0.29
VIM-209ENST00000544301 TENM4Q6N022 2769 aa13.21□□□□□ -0.3
VIM-209ENST00000544301 K7EP34 96 aa13.21□□□□□ -0.3
VIM-209ENST00000544301 TEX29Q8N6K0 151 aa13.21□□□□□ -0.3
VIM-209ENST00000544301 HIST1H4GQ99525 98 aa13.21□□□□□ -0.3
VIM-209ENST00000544301 NHP2Q9NX24 153 aaKnown RBP13.21□□□□□ -0.3
VIM-209ENST00000544301 GAGE12BA1L429 117 aa13.2□□□□□ -0.3
VIM-209ENST00000544301 EMP1P54849 157 aa13.2□□□□□ -0.3
VIM-209ENST00000544301 PAPPA-AS1Q5QFB9 102 aa13.2□□□□□ -0.3
VIM-209ENST00000544301 TRBV7-3A0A075B6L6 115 aa13.19□□□□□ -0.3
VIM-209ENST00000544301 PRM2P04554 102 aa13.19□□□□□ -0.3
VIM-209ENST00000544301 P0DMU3 169 aa13.19□□□□□ -0.3
VIM-209ENST00000544301 FAM231AP0DMU4 169 aa13.19□□□□□ -0.3
VIM-209ENST00000544301 FAM231CP0DMU5 169 aa13.19□□□□□ -0.3
VIM-209ENST00000544301 SPAG8Q99932 426 aaPredicted RBP13.19□□□□□ -0.3
VIM-209ENST00000544301 CD300EQ496F6 205 aaPredicted RBP13.19□□□□□ -0.3
VIM-209ENST00000544301 SAMD5Q5TGI4 173 aa13.19□□□□□ -0.3
VIM-209ENST00000544301 I3L3M4 83 aa13.18□□□□□ -0.3
VIM-209ENST00000544301 HIST2H2BCQ6DN03 193 aa13.18□□□□□ -0.3
VIM-209ENST00000544301 RAX2Q96IS3 184 aa13.18□□□□□ -0.3
VIM-209ENST00000544301 EDA2RQ9HAV5 297 aa13.18□□□□□ -0.3
VIM-209ENST00000544301 IGHV3-73A0A0B4J1V6 119 aa13.17□□□□□ -0.3
VIM-209ENST00000544301 ESM1Q9NQ30 184 aa13.17□□□□□ -0.3
VIM-209ENST00000544301 CHD6Q8TD26 2715 aa13.17□□□□□ -0.3
VIM-209ENST00000544301 SONP18583 2426 aaKnown RBP13.16□□□□□ -0.3
VIM-209ENST00000544301 ZNF815PA8K554 130 aa13.16□□□□□ -0.3
VIM-209ENST00000544301 M0R2P5 195 aa13.16□□□□□ -0.3
VIM-209ENST00000544301 FABP2P12104 132 aa13.16□□□□□ -0.3
VIM-209ENST00000544301 C20orf203Q8NBC4 194 aa13.16□□□□□ -0.3
VIM-209ENST00000544301 ZNRF2Q8NHG8 242 aa13.16□□□□□ -0.3
VIM-209ENST00000544301 SPCS1Q9Y6A9 102 aa13.16□□□□□ -0.3
VIM-209ENST00000544301 PROK1P58294 105 aa13.16□□□□□ -0.3
VIM-209ENST00000544301 HERVK_113P61574 105 aa13.16□□□□□ -0.3
VIM-209ENST00000544301 RBX1P62877 108 aa13.16□□□□□ -0.3
VIM-209ENST00000544301 ZNF415Q09FC8 603 aa13.16□□□□□ -0.3
VIM-209ENST00000544301 OPRPNQ99935 248 aaPredicted RBP13.16□□□□□ -0.3
VIM-209ENST00000544301 FLNAP21333 2647 aaKnown RBP13.16□□□□□ -0.3
VIM-209ENST00000544301 NF1P21359 2839 aa13.15□□□□□ -0.3
VIM-209ENST00000544301 A8MWV9 139 aa13.15□□□□□ -0.3
VIM-209ENST00000544301 C12orf74Q32Q52 190 aa13.15□□□□□ -0.3
VIM-209ENST00000544301 PIK3CD-AS1Q5SR53 167 aa13.15□□□□□ -0.3
VIM-209ENST00000544301 C11orf44Q8N8P7 122 aa13.15□□□□□ -0.3
VIM-209ENST00000544301 SCGB2A2Q13296 93 aa13.14□□□□□ -0.31
VIM-209ENST00000544301 PTH2Q96A98 100 aa13.14□□□□□ -0.31
VIM-209ENST00000544301 PLEKHB2Q96CS7 222 aa13.14□□□□□ -0.31
VIM-209ENST00000544301 LINC01587Q99440 93 aa13.14□□□□□ -0.31
VIM-209ENST00000544301 LINC00467Q9BRT7 94 aa13.14□□□□□ -0.31
VIM-209ENST00000544301 A0A1W2PRX2 142 aa13.13□□□□□ -0.31
VIM-209ENST00000544301 FHL3Q13643 280 aa13.13□□□□□ -0.31
VIM-209ENST00000544301 OCIAD2Q56VL3 154 aa13.13□□□□□ -0.31
VIM-209ENST00000544301 OR5A1Q8NGJ0 315 aa13.13□□□□□ -0.31
VIM-209ENST00000544301 CBY1Q9Y3M2 126 aa13.13□□□□□ -0.31
VIM-209ENST00000544301 TMEM170BQ5T4T1 132 aa13.13□□□□□ -0.31
VIM-209ENST00000544301 C11orf72Q8NBR9 251 aa13.13□□□□□ -0.31
VIM-209ENST00000544301 IGLL5B9A064 214 aa13.12□□□□□ -0.31
VIM-209ENST00000544301 INSP01308 110 aa13.12□□□□□ -0.31
VIM-209ENST00000544301 CD28P10747 220 aa13.12□□□□□ -0.31
VIM-209ENST00000544301 ODF3L2Q3SX64 289 aa13.12□□□□□ -0.31
VIM-209ENST00000544301 SCGB1D4Q6XE38 83 aa13.12□□□□□ -0.31
VIM-209ENST00000544301 NFE4Q86UQ8 179 aa13.12□□□□□ -0.31
VIM-209ENST00000544301 CCDC168Q8NDH2 2452 aa13.12□□□□□ -0.31
VIM-209ENST00000544301 TRAV25A0A0B4J276 109 aa13.12□□□□□ -0.31
VIM-209ENST00000544301 CFAP126Q5VTH2 177 aa13.12□□□□□ -0.31
VIM-209ENST00000544301 Q6ZSN1 163 aa13.12□□□□□ -0.31
VIM-209ENST00000544301 PDZD2O15018 2839 aa13.11□□□□□ -0.31
VIM-209ENST00000544301 A0A1B0GWB2 263 aa13.11□□□□□ -0.31
VIM-209ENST00000544301 CCL24O00175 119 aa13.11□□□□□ -0.31
VIM-209ENST00000544301 KRTAP1-1Q07627 177 aa13.11□□□□□ -0.31
VIM-209ENST00000544301 CLUHP3Q96NS8 147 aa13.11□□□□□ -0.31
VIM-209ENST00000544301 CUBNO60494 3623 aa13.11□□□□□ -0.31
VIM-209ENST00000544301 IGLV4-3A0A075B6K6 122 aa13.1□□□□□ -0.31
VIM-209ENST00000544301 TSPEAR-AS2P59090 65 aa13.1□□□□□ -0.31
VIM-209ENST00000544301 TNFRSF18Q9Y5U5 241 aa13.1□□□□□ -0.31
VIM-209ENST00000544301 NACAE9PAV3 2078 aa13.1□□□□□ -0.31
VIM-209ENST00000544301 Q9UF83 564 aa13.1□□□□□ -0.31
VIM-209ENST00000544301 SPXQ9BT56 116 aa13.09□□□□□ -0.31
VIM-209ENST00000544301 BEAN1Q3B7T3 259 aa13.09□□□□□ -0.31
VIM-209ENST00000544301 MRPL16Q9NX20 251 aaKnown RBP13.09□□□□□ -0.31
VIM-209ENST00000544301 CITED2Q99967 270 aaPredicted RBP13.08□□□□□ -0.32
VIM-209ENST00000544301 VCX2Q9H322 139 aa13.08□□□□□ -0.32
VIM-209ENST00000544301 XCL2Q9UBD3 114 aa13.08□□□□□ -0.32
VIM-209ENST00000544301 A0A0J9YY99 117 aa13.07□□□□□ -0.32
VIM-209ENST00000544301 STHQ8IWL8 128 aa13.07□□□□□ -0.32
VIM-209ENST00000544301 ZNF479Q96JC4 524 aa13.07□□□□□ -0.32
VIM-209ENST00000544301 PYGO1Q9Y3Y4 419 aa13.07□□□□□ -0.32
VIM-209ENST00000544301 TMEM223A0PJW6 202 aa13.07□□□□□ -0.32
VIM-209ENST00000544301 RHODO00212 210 aa13.07□□□□□ -0.32
VIM-209ENST00000544301 SRSF9Q13242 221 aaKnown RBP eCLIP13.07□□□□□ -0.32
VIM-209ENST00000544301 RNF151Q2KHN1 245 aa13.07□□□□□ -0.32
VIM-209ENST00000544301 AMELXQ99217 191 aa13.07□□□□□ -0.32
VIM-209ENST00000544301 YAE1D1Q9NRH1 226 aa13.07□□□□□ -0.32
VIM-209ENST00000544301 J3QQQ9 107 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms