RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 DEFB4AO15263 64 aa5.27□□□□□ -1.57
VPS53-205ENST00000541903 RPL32P62910 135 aaKnown RBP5.27□□□□□ -1.57
VPS53-205ENST00000541903 DEFB121Q5J5C9 76 aa5.27□□□□□ -1.57
VPS53-205ENST00000541903 FAM19A2Q8N3H0 131 aa5.27□□□□□ -1.57
VPS53-205ENST00000541903 LINC00612Q8N6U2 182 aa5.27□□□□□ -1.57
VPS53-205ENST00000541903 OR10D4PQ8NGN7 298 aa5.27□□□□□ -1.57
VPS53-205ENST00000541903 ZNF479Q96JC4 524 aa5.27□□□□□ -1.57
VPS53-205ENST00000541903 C18orf15Q96N68 181 aa5.27□□□□□ -1.57
VPS53-205ENST00000541903 MUC4Q99102 2169 aa5.27□□□□□ -1.57
VPS53-205ENST00000541903 RETNQ9HD89 108 aa5.27□□□□□ -1.57
VPS53-205ENST00000541903 NIT2Q9NQR4 276 aa5.27□□□□□ -1.57
VPS53-205ENST00000541903 TNFRSF18Q9Y5U5 241 aa5.27□□□□□ -1.57
VPS53-205ENST00000541903 TRGV4A0A0C4DH28 118 aa5.26□□□□□ -1.57
VPS53-205ENST00000541903 SDHAF1A6NFY7 115 aa5.26□□□□□ -1.57
VPS53-205ENST00000541903 K7EMI3 77 aa5.26□□□□□ -1.57
VPS53-205ENST00000541903 K7EQD1 137 aa5.26□□□□□ -1.57
VPS53-205ENST00000541903 VCYO14598 125 aa5.26□□□□□ -1.57
VPS53-205ENST00000541903 SPART-AS1P0CW21 52 aa5.26□□□□□ -1.57
VPS53-205ENST00000541903 PMCHL1Q16048 86 aa5.26□□□□□ -1.57
VPS53-205ENST00000541903 Q6ZSN1 163 aa5.26□□□□□ -1.57
VPS53-205ENST00000541903 DNAJC30Q96LL9 226 aa5.26□□□□□ -1.57
VPS53-205ENST00000541903 KIR2DL4Q99706 377 aa5.26□□□□□ -1.57
VPS53-205ENST00000541903 SPATA25Q9BR10 227 aa5.26□□□□□ -1.57
VPS53-205ENST00000541903 TMEM70Q9BUB7 260 aa5.26□□□□□ -1.57
VPS53-205ENST00000541903 DKK2Q9UBU2 259 aa5.26□□□□□ -1.57
VPS53-205ENST00000541903 VWFP04275 2813 aa5.25□□□□□ -1.57
VPS53-205ENST00000541903 IGLV2-18A0A075B6J9 118 aa5.25□□□□□ -1.57
VPS53-205ENST00000541903 TRBV10-1A0A0K0K1A3 114 aa5.25□□□□□ -1.57
VPS53-205ENST00000541903 LINC01546A6NGU7 62 aa5.25□□□□□ -1.57
VPS53-205ENST00000541903 TCAPO15273 167 aa5.25□□□□□ -1.57
VPS53-205ENST00000541903 HBDP02042 147 aa5.25□□□□□ -1.57
VPS53-205ENST00000541903 P0DMU3 169 aa5.25□□□□□ -1.57
VPS53-205ENST00000541903 FAM231AP0DMU4 169 aa5.25□□□□□ -1.57
VPS53-205ENST00000541903 FAM231CP0DMU5 169 aa5.25□□□□□ -1.57
VPS53-205ENST00000541903 FCER1GP30273 86 aa5.25□□□□□ -1.57
VPS53-205ENST00000541903 DAD1P61803 113 aa5.25□□□□□ -1.57
VPS53-205ENST00000541903 LAGE3Q14657 143 aa5.25□□□□□ -1.57
VPS53-205ENST00000541903 RHOHQ15669 191 aa5.25□□□□□ -1.57
VPS53-205ENST00000541903 ORMDL2Q53FV1 153 aa5.25□□□□□ -1.57
VPS53-205ENST00000541903 NEGR1Q7Z3B1 354 aa5.25□□□□□ -1.57
VPS53-205ENST00000541903 NEXN-AS1Q8NBZ9 246 aa5.25□□□□□ -1.57
VPS53-205ENST00000541903 PRADC1Q9BSG0 188 aa5.25□□□□□ -1.57
VPS53-205ENST00000541903 C11orf68Q9H3H3 251 aaKnown RBP5.25□□□□□ -1.57
VPS53-205ENST00000541903 HSPB8Q9UJY1 196 aa5.25□□□□□ -1.57
VPS53-205ENST00000541903 TRBV27A0A0K0K1C4 114 aa5.24□□□□□ -1.57
VPS53-205ENST00000541903 TRBV6-4A0A1B0GX49 114 aa5.24□□□□□ -1.57
VPS53-205ENST00000541903 I3L3M4 83 aa5.24□□□□□ -1.57
VPS53-205ENST00000541903 LEPROTL1O95214 131 aa5.24□□□□□ -1.57
VPS53-205ENST00000541903 NUDT3O95989 172 aa5.24□□□□□ -1.57
VPS53-205ENST00000541903 G0S2P27469 103 aa5.24□□□□□ -1.57
VPS53-205ENST00000541903 POLR2KP53803 58 aaKnown RBP5.24□□□□□ -1.57
VPS53-205ENST00000541903 KRTDAPP60985 99 aa5.24□□□□□ -1.57
VPS53-205ENST00000541903 RPL36AP83881 106 aaKnown RBP5.24□□□□□ -1.57
VPS53-205ENST00000541903 FHL2Q14192 279 aa5.24□□□□□ -1.57
VPS53-205ENST00000541903 SBSPONQ8IVN8 264 aa5.24□□□□□ -1.57
VPS53-205ENST00000541903 MRAPQ8TCY5 172 aa5.24□□□□□ -1.57
VPS53-205ENST00000541903 RPL36ALQ969Q0 106 aaKnown RBP5.24□□□□□ -1.57
VPS53-205ENST00000541903 CELA1Q9UNI1 258 aa5.24□□□□□ -1.57
VPS53-205ENST00000541903 TRBV7-3A0A075B6L6 115 aa5.23□□□□□ -1.57
VPS53-205ENST00000541903 GAGE12JA6NER3 117 aa5.23□□□□□ -1.57
VPS53-205ENST00000541903 ATP5G1P05496 136 aa5.23□□□□□ -1.57
VPS53-205ENST00000541903 SMIM6P0DI80 62 aa5.23□□□□□ -1.57
VPS53-205ENST00000541903 BTF3P20290 206 aaKnown RBP5.23□□□□□ -1.57
VPS53-205ENST00000541903 GAGE1Q13065 139 aa5.23□□□□□ -1.57
VPS53-205ENST00000541903 GAGE4Q13068 117 aa5.23□□□□□ -1.57
VPS53-205ENST00000541903 GAGE5Q13069 117 aa5.23□□□□□ -1.57
VPS53-205ENST00000541903 GAGE13Q4V321 117 aa5.23□□□□□ -1.57
VPS53-205ENST00000541903 SLC25A29Q8N8R3 303 aa5.23□□□□□ -1.57
VPS53-205ENST00000541903 ZNRF2Q8NHG8 242 aa5.23□□□□□ -1.57
VPS53-205ENST00000541903 TM2D3Q9BRN9 247 aa5.23□□□□□ -1.57
VPS53-205ENST00000541903 TRRAPQ9Y4A5 3859 aa5.23□□□□□ -1.57
VPS53-205ENST00000541903 A0A096LNJ9 63 aa5.22□□□□□ -1.57
VPS53-205ENST00000541903 LINC01549A6NIU2 74 aa5.22□□□□□ -1.57
VPS53-205ENST00000541903 COTL1Q14019 142 aa5.22□□□□□ -1.57
VPS53-205ENST00000541903 DAZ4Q86SG3 579 aaKnown RBP5.22□□□□□ -1.57
VPS53-205ENST00000541903 MAP1LC3CQ9BXW4 147 aa5.22□□□□□ -1.57
VPS53-205ENST00000541903 ZMAT4Q9H898 229 aa5.22□□□□□ -1.57
VPS53-205ENST00000541903 DAZ3Q9NR90 486 aaKnown RBP5.22□□□□□ -1.57
VPS53-205ENST00000541903 PRO0255Q9UI72 69 aa5.22□□□□□ -1.57
VPS53-205ENST00000541903 HHLA3Q9XRX5 114 aa5.22□□□□□ -1.57
VPS53-205ENST00000541903 CYSLTR1Q9Y271 337 aa5.22□□□□□ -1.57
VPS53-205ENST00000541903 ANK2Q01484 3957 aa5.22□□□□□ -1.57
VPS53-205ENST00000541903 IGHV3-38A0A0C4DH36 116 aa5.21□□□□□ -1.58
VPS53-205ENST00000541903 A0A0J9YWU9 116 aa5.21□□□□□ -1.58
VPS53-205ENST00000541903 C20orf202A1L168 122 aa5.21□□□□□ -1.58
VPS53-205ENST00000541903 F5H768 121 aa5.21□□□□□ -1.58
VPS53-205ENST00000541903 ATP5LO75964 103 aa5.21□□□□□ -1.58
VPS53-205ENST00000541903 SCGB1D1O95968 90 aa5.21□□□□□ -1.58
VPS53-205ENST00000541903 TSHBP01222 138 aa5.21□□□□□ -1.58
VPS53-205ENST00000541903 HTN3P15516 51 aa5.21□□□□□ -1.58
VPS53-205ENST00000541903 CRYBA4P53673 196 aa5.21□□□□□ -1.58
VPS53-205ENST00000541903 UBE2D3P61077 147 aa5.21□□□□□ -1.58
VPS53-205ENST00000541903 UBE2D2P62837 147 aa5.21□□□□□ -1.58
VPS53-205ENST00000541903 JOSD1Q15040 202 aaPredicted RBP5.21□□□□□ -1.58
VPS53-205ENST00000541903 C2orf66Q6UXQ4 117 aa5.21□□□□□ -1.58
VPS53-205ENST00000541903 PHLDA1Q8WV24 401 aaPredicted RBP5.21□□□□□ -1.58
VPS53-205ENST00000541903 LOC100131303A0A0U1RQF7 123 aa5.2□□□□□ -1.58
VPS53-205ENST00000541903 H0Y8G0 127 aa5.2□□□□□ -1.58
VPS53-205ENST00000541903 SYS1-DBNDD2H3BUS1 97 aa5.2□□□□□ -1.58
VPS53-205ENST00000541903 PAX4O43316 350 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms