RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.54□□□□□ -0.72
CLIP1-216ENST00000541410 TOMM6Q96B49 74 aa10.54□□□□□ -0.72
CLIP1-216ENST00000541410 C2orf88Q9BSF0 95 aa10.54□□□□□ -0.72
CLIP1-216ENST00000541410 TRRAPQ9Y4A5 3859 aa10.54□□□□□ -0.72
CLIP1-216ENST00000541410 GIG44P09565 113 aaPredicted RBP10.53□□□□□ -0.72
CLIP1-216ENST00000541410 SLC25A34Q6PIV7 304 aa10.53□□□□□ -0.72
CLIP1-216ENST00000541410 ZFP2Q6ZN57 461 aa10.53□□□□□ -0.72
CLIP1-216ENST00000541410 LINC00482Q8N8I6 264 aa10.53□□□□□ -0.72
CLIP1-216ENST00000541410 NMUP48645 174 aa10.53□□□□□ -0.72
CLIP1-216ENST00000541410 NUTF2P61970 127 aaKnown RBP10.53□□□□□ -0.72
CLIP1-216ENST00000541410 TTTY13Q9BZ97 58 aa10.53□□□□□ -0.72
CLIP1-216ENST00000541410 TP53TG1Q9Y2A0 90 aa10.53□□□□□ -0.72
CLIP1-216ENST00000541410 VCYO14598 125 aa10.52□□□□□ -0.73
CLIP1-216ENST00000541410 BEAN1Q3B7T3 259 aa10.52□□□□□ -0.73
CLIP1-216ENST00000541410 KIR2DL4Q99706 377 aa10.52□□□□□ -0.73
CLIP1-216ENST00000541410 CFAP126Q5VTH2 177 aa10.52□□□□□ -0.73
CLIP1-216ENST00000541410 IGKV2D-26A0A0A0MRZ7 120 aa10.51□□□□□ -0.73
CLIP1-216ENST00000541410 IGKCP01834 107 aa10.51□□□□□ -0.73
CLIP1-216ENST00000541410 GTSCR1Q86UQ5 136 aa10.51□□□□□ -0.73
CLIP1-216ENST00000541410 PCP2Q8IVA1 136 aa10.51□□□□□ -0.73
CLIP1-216ENST00000541410 HHLA3Q9XRX5 114 aa10.51□□□□□ -0.73
CLIP1-216ENST00000541410 TRGV1A0A0A0MS02 117 aa10.5□□□□□ -0.73
CLIP1-216ENST00000541410 TRBV27A0A0K0K1C4 114 aa10.5□□□□□ -0.73
CLIP1-216ENST00000541410 IGHV3-53P01767 116 aa10.5□□□□□ -0.73
CLIP1-216ENST00000541410 COX8AP10176 69 aa10.5□□□□□ -0.73
CLIP1-216ENST00000541410 EMP1P54849 157 aa10.5□□□□□ -0.73
CLIP1-216ENST00000541410 BAALCQ8WXS3 180 aa10.5□□□□□ -0.73
CLIP1-216ENST00000541410 CLUHP3Q96NS8 147 aa10.5□□□□□ -0.73
CLIP1-216ENST00000541410 NBEAL2Q6ZNJ1 2754 aa10.5□□□□□ -0.73
CLIP1-216ENST00000541410 DPM2O94777 84 aa10.5□□□□□ -0.73
CLIP1-216ENST00000541410 OPRPNQ99935 248 aaPredicted RBP10.5□□□□□ -0.73
CLIP1-216ENST00000541410 ZMAT4Q9H898 229 aa10.5□□□□□ -0.73
CLIP1-216ENST00000541410 CYSLTR1Q9Y271 337 aa10.5□□□□□ -0.73
CLIP1-216ENST00000541410 A0A087WX48 190 aa10.49□□□□□ -0.73
CLIP1-216ENST00000541410 TRBV6-5A0A0K0K1A5 114 aa10.49□□□□□ -0.73
CLIP1-216ENST00000541410 A8MWV9 139 aa10.49□□□□□ -0.73
CLIP1-216ENST00000541410 FOSL1P15407 271 aa10.49□□□□□ -0.73
CLIP1-216ENST00000541410 MPV17L2Q567V2 206 aa10.49□□□□□ -0.73
CLIP1-216ENST00000541410 UFSP1Q6NVU6 142 aa10.49□□□□□ -0.73
CLIP1-216ENST00000541410 MRPS16Q9Y3D3 137 aaKnown RBP10.49□□□□□ -0.73
CLIP1-216ENST00000541410 TSHBP01222 138 aa10.48□□□□□ -0.73
CLIP1-216ENST00000541410 LBHQ53QV2 105 aaPredicted RBP10.48□□□□□ -0.73
CLIP1-216ENST00000541410 Q6ZTI0 123 aa10.48□□□□□ -0.73
CLIP1-216ENST00000541410 RNASE8Q8TDE3 154 aaKnown RBP10.48□□□□□ -0.73
CLIP1-216ENST00000541410 K7EMI3 77 aa10.48□□□□□ -0.73
CLIP1-216ENST00000541410 FGF6P10767 208 aa10.48□□□□□ -0.73
CLIP1-216ENST00000541410 ERASQ7Z444 233 aa10.48□□□□□ -0.73
CLIP1-216ENST00000541410 NEXN-AS1Q8NBZ9 246 aa10.48□□□□□ -0.73
CLIP1-216ENST00000541410 NOP10Q9NPE3 64 aaKnown RBP10.48□□□□□ -0.73
CLIP1-216ENST00000541410 IGHV3-38A0A0C4DH36 116 aa10.47□□□□□ -0.73
CLIP1-216ENST00000541410 Q6ZVH6 145 aa10.47□□□□□ -0.73
CLIP1-216ENST00000541410 CHTOPQ9Y3Y2 248 aaKnown RBP10.47□□□□□ -0.73
CLIP1-216ENST00000541410 PRSS29PA6NIE9 313 aa10.47□□□□□ -0.73
CLIP1-216ENST00000541410 RPL32P62910 135 aaKnown RBP10.47□□□□□ -0.73
CLIP1-216ENST00000541410 C2orf91Q6ZV80 131 aa10.47□□□□□ -0.73
CLIP1-216ENST00000541410 LINC00467Q9BRT7 94 aa10.47□□□□□ -0.73
CLIP1-216ENST00000541410 SPXQ9BT56 116 aa10.47□□□□□ -0.73
CLIP1-216ENST00000541410 PHLDA1Q8WV24 401 aaPredicted RBP10.46□□□□□ -0.73
CLIP1-216ENST00000541410 ZNF479Q96JC4 524 aa10.46□□□□□ -0.73
CLIP1-216ENST00000541410 ZMAT5Q9UDW3 170 aaKnown RBP10.46□□□□□ -0.73
CLIP1-216ENST00000541410 TNFRSF18Q9Y5U5 241 aa10.46□□□□□ -0.73
CLIP1-216ENST00000541410 IGIPA6NJ69 53 aa10.46□□□□□ -0.74
CLIP1-216ENST00000541410 I3L3M4 83 aa10.46□□□□□ -0.74
CLIP1-216ENST00000541410 CMC4P56277 68 aaPredicted RBP10.46□□□□□ -0.74
CLIP1-216ENST00000541410 F8VRH5 84 aa10.45□□□□□ -0.74
CLIP1-216ENST00000541410 H7C1H1 209 aa10.45□□□□□ -0.74
CLIP1-216ENST00000541410 OR4C5Q8NGB2 326 aa10.45□□□□□ -0.74
CLIP1-216ENST00000541410 TMEM263Q8WUH6 116 aaKnown RBP10.45□□□□□ -0.74
CLIP1-216ENST00000541410 CSNK1G2-AS1Q8NCQ2 148 aa10.44□□□□□ -0.74
CLIP1-216ENST00000541410 RS1O15537 224 aa10.44□□□□□ -0.74
CLIP1-216ENST00000541410 CEMP1Q6PRD7 247 aaPredicted RBP10.44□□□□□ -0.74
CLIP1-216ENST00000541410 MRPL52Q86TS9 123 aaKnown RBP10.44□□□□□ -0.74
CLIP1-216ENST00000541410 BOD1L2Q8IYS8 172 aa10.44□□□□□ -0.74
CLIP1-216ENST00000541410 FAM110AQ9BQ89 295 aa10.44□□□□□ -0.74
CLIP1-216ENST00000541410 TRAV12-1A0A0B4J245 112 aa10.43□□□□□ -0.74
CLIP1-216ENST00000541410 TRAV8-6A0A0B4J262 113 aa10.43□□□□□ -0.74
CLIP1-216ENST00000541410 RIPPLY3P57055 190 aa10.43□□□□□ -0.74
CLIP1-216ENST00000541410 IL17DQ8TAD2 202 aa10.43□□□□□ -0.74
CLIP1-216ENST00000541410 CITED1Q99966 193 aa10.43□□□□□ -0.74
CLIP1-216ENST00000541410 GAGE12BA1L429 117 aa10.43□□□□□ -0.74
CLIP1-216ENST00000541410 PLAC8L1A1L4L8 177 aa10.43□□□□□ -0.74
CLIP1-216ENST00000541410 GAGE7O76087 117 aa10.43□□□□□ -0.74
CLIP1-216ENST00000541410 GAGE12FP0CL80 117 aa10.43□□□□□ -0.74
CLIP1-216ENST00000541410 GAGE12GP0CL81 117 aa10.43□□□□□ -0.74
CLIP1-216ENST00000541410 GAGE12IP0CL82 117 aa10.43□□□□□ -0.74
CLIP1-216ENST00000541410 G0S2P27469 103 aa10.43□□□□□ -0.74
CLIP1-216ENST00000541410 COL5A1-AS1Q5SY13 56 aa10.43□□□□□ -0.74
CLIP1-216ENST00000541410 PLNP26678 52 aa10.42□□□□□ -0.74
CLIP1-216ENST00000541410 RNASE13Q5GAN3 156 aaKnown RBP10.42□□□□□ -0.74
CLIP1-216ENST00000541410 C20orf203Q8NBC4 194 aa10.42□□□□□ -0.74
CLIP1-216ENST00000541410 RHODO00212 210 aa10.41□□□□□ -0.74
CLIP1-216ENST00000541410 ZNF25P17030 456 aaPredicted RBP10.41□□□□□ -0.74
CLIP1-216ENST00000541410 RRN3P1Q2M238 152 aa10.41□□□□□ -0.74
CLIP1-216ENST00000541410 PIK3CD-AS1Q5SR53 167 aa10.41□□□□□ -0.74
CLIP1-216ENST00000541410 BVES-AS1Q5T3Y7 98 aa10.41□□□□□ -0.74
CLIP1-216ENST00000541410 MAPKAPK5-AS1Q8N8E1 139 aa10.41□□□□□ -0.74
CLIP1-216ENST00000541410 PTH2Q96A98 100 aa10.41□□□□□ -0.74
CLIP1-216ENST00000541410 BAHCC1Q9P281 2608 aa10.41□□□□□ -0.74
CLIP1-216ENST00000541410 C11orf86A6NJI1 115 aa10.4□□□□□ -0.74
CLIP1-216ENST00000541410 CYSRT1A8MQ03 144 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms