RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 DAZ1Q9NQZ3 744 aaKnown RBP7.1□□□□□ -1.27
CLIP1-214ENST00000540539 DAZ3Q9NR90 486 aaKnown RBP7.1□□□□□ -1.27
CLIP1-214ENST00000540539 BUB3O43684 328 aa7.1□□□□□ -1.27
CLIP1-214ENST00000540539 ZNRD1Q9P1U0 126 aa7.1□□□□□ -1.27
CLIP1-214ENST00000540539 LOXP28300 417 aaPredicted RBP7.09□□□□□ -1.27
CLIP1-214ENST00000540539 SUMO2P61956 95 aaKnown RBP7.09□□□□□ -1.27
CLIP1-214ENST00000540539 DYNAPQ8N1N2 210 aa7.09□□□□□ -1.28
CLIP1-214ENST00000540539 SLC25A15Q9Y619 301 aa7.09□□□□□ -1.28
CLIP1-214ENST00000540539 CFAP46Q8IYW2 2715 aa7.08□□□□□ -1.28
CLIP1-214ENST00000540539 POLEQ07864 2286 aa7.08□□□□□ -1.28
CLIP1-214ENST00000540539 TRAV12-3A0A0B4J271 114 aa7.08□□□□□ -1.28
CLIP1-214ENST00000540539 CCL21O00585 134 aa7.08□□□□□ -1.28
CLIP1-214ENST00000540539 C17orf58Q2M2W7 97 aa7.08□□□□□ -1.28
CLIP1-214ENST00000540539 RNF182Q8N6D2 247 aa7.08□□□□□ -1.28
CLIP1-214ENST00000540539 Q96MF0 132 aa7.08□□□□□ -1.28
CLIP1-214ENST00000540539 LINC00474Q9P2X8 69 aa7.08□□□□□ -1.28
CLIP1-214ENST00000540539 TMEM89A2RUT3 159 aa7.08□□□□□ -1.28
CLIP1-214ENST00000540539 SS18Q15532 418 aa7.08□□□□□ -1.28
CLIP1-214ENST00000540539 PCNX1Q96RV3 2341 aa7.07□□□□□ -1.28
CLIP1-214ENST00000540539 H3BRN7 92 aa7.07□□□□□ -1.28
CLIP1-214ENST00000540539 LYZL6O75951 148 aa7.07□□□□□ -1.28
CLIP1-214ENST00000540539 CGB3P0DN86 165 aa7.07□□□□□ -1.28
CLIP1-214ENST00000540539 CGB7P0DN87 165 aa7.07□□□□□ -1.28
CLIP1-214ENST00000540539 FAM201AQ5SY85 155 aa7.07□□□□□ -1.28
CLIP1-214ENST00000540539 Q6JHZ5 121 aa7.07□□□□□ -1.28
CLIP1-214ENST00000540539 RAI1Q7Z5J4 1906 aaPredicted RBP7.07□□□□□ -1.28
CLIP1-214ENST00000540539 C20orf197Q8N268 126 aa7.07□□□□□ -1.28
CLIP1-214ENST00000540539 C22orf24Q9Y442 160 aa7.07□□□□□ -1.28
CLIP1-214ENST00000540539 SMG1Q96Q15 3661 aaKnown RBP7.07□□□□□ -1.28
CLIP1-214ENST00000540539 IGKV1D-17A0A075B6S4 117 aa7.07□□□□□ -1.28
CLIP1-214ENST00000540539 KNCNA6PVL3 124 aa7.07□□□□□ -1.28
CLIP1-214ENST00000540539 H7BZZ5 65 aa7.07□□□□□ -1.28
CLIP1-214ENST00000540539 PMAIP1Q13794 54 aa7.07□□□□□ -1.28
CLIP1-214ENST00000540539 LYPD5Q6UWN5 251 aa7.07□□□□□ -1.28
CLIP1-214ENST00000540539 TMEM167AQ8TBQ9 72 aa7.07□□□□□ -1.28
CLIP1-214ENST00000540539 RPL39LQ96EH5 51 aaKnown RBP7.07□□□□□ -1.28
CLIP1-214ENST00000540539 A0A0J9YXY3 114 aa7.06□□□□□ -1.28
CLIP1-214ENST00000540539 ZNF561-AS1K7EIQ3 104 aa7.06□□□□□ -1.28
CLIP1-214ENST00000540539 LEPROTO15243 131 aa7.06□□□□□ -1.28
CLIP1-214ENST00000540539 APELAP0DMC3 54 aa7.06□□□□□ -1.28
CLIP1-214ENST00000540539 ZNRF1Q8ND25 227 aa7.06□□□□□ -1.28
CLIP1-214ENST00000540539 LITAFQ99732 161 aa7.06□□□□□ -1.28
CLIP1-214ENST00000540539 IGHV3-64A0A075B6Q5 118 aa7.06□□□□□ -1.28
CLIP1-214ENST00000540539 M0R1W7 72 aa7.06□□□□□ -1.28
CLIP1-214ENST00000540539 ADAMTSL4-AS1Q5T5F5 129 aa7.06□□□□□ -1.28
CLIP1-214ENST00000540539 NUP37Q8NFH4 326 aa7.06□□□□□ -1.28
CLIP1-214ENST00000540539 IGKV3D-20A0A0C4DH25 116 aa7.05□□□□□ -1.28
CLIP1-214ENST00000540539 SDHAF1A6NFY7 115 aa7.05□□□□□ -1.28
CLIP1-214ENST00000540539 IGIPA6NJ69 53 aa7.05□□□□□ -1.28
CLIP1-214ENST00000540539 J3QL48 77 aa7.05□□□□□ -1.28
CLIP1-214ENST00000540539 IGHG2P01859 326 aa7.05□□□□□ -1.28
CLIP1-214ENST00000540539 XCL1P47992 114 aa7.05□□□□□ -1.28
CLIP1-214ENST00000540539 PVRIGQ6DKI7 326 aa7.05□□□□□ -1.28
CLIP1-214ENST00000540539 XCL2Q9UBD3 114 aa7.05□□□□□ -1.28
CLIP1-214ENST00000540539 UBE2D4Q9Y2X8 147 aa7.05□□□□□ -1.28
CLIP1-214ENST00000540539 KMT2BQ9UMN6 2715 aaPredicted RBP7.05□□□□□ -1.28
CLIP1-214ENST00000540539 CADP27708 2225 aa7.05□□□□□ -1.28
CLIP1-214ENST00000540539 IGKV3D-15A0A087WSY6 115 aa7.05□□□□□ -1.28
CLIP1-214ENST00000540539 A0A0J9YX75 114 aa7.05□□□□□ -1.28
CLIP1-214ENST00000540539 TMEM61Q8N0U2 210 aa7.05□□□□□ -1.28
CLIP1-214ENST00000540539 IGHV7-4-1A0A0J9YVY3 117 aa7.04□□□□□ -1.28
CLIP1-214ENST00000540539 GHRHP01286 108 aa7.04□□□□□ -1.28
CLIP1-214ENST00000540539 IGKV1-17P01599 117 aa7.04□□□□□ -1.28
CLIP1-214ENST00000540539 INAFM2P0DMQ5 153 aa7.04□□□□□ -1.28
CLIP1-214ENST00000540539 PDE6HQ13956 83 aa7.04□□□□□ -1.28
CLIP1-214ENST00000540539 ZNF876PQ49A33 203 aa7.04□□□□□ -1.28
CLIP1-214ENST00000540539 APRG1Q8IVJ8 170 aa7.04□□□□□ -1.28
CLIP1-214ENST00000540539 C11orf21Q9P2W6 132 aa7.04□□□□□ -1.28
CLIP1-214ENST00000540539 ZNF580Q9UK33 172 aa7.04□□□□□ -1.28
CLIP1-214ENST00000540539 FAM215AQ9Y5M1 114 aa7.04□□□□□ -1.28
CLIP1-214ENST00000540539 CHD6Q8TD26 2715 aa7.04□□□□□ -1.28
CLIP1-214ENST00000540539 RBMY1BA6NDE4 496 aaKnown RBP7.04□□□□□ -1.28
CLIP1-214ENST00000540539 RBMY1EA6NEQ0 496 aaKnown RBP7.04□□□□□ -1.28
CLIP1-214ENST00000540539 ADARB2-AS1A8MUL3 147 aa7.04□□□□□ -1.28
CLIP1-214ENST00000540539 RBMY1DP0C7P1 496 aaKnown RBP7.04□□□□□ -1.28
CLIP1-214ENST00000540539 RBMY1A1P0DJD3 496 aaKnown RBP7.04□□□□□ -1.28
CLIP1-214ENST00000540539 RBMY1CP0DJD4 496 aa7.04□□□□□ -1.28
CLIP1-214ENST00000540539 RBMY1FQ15415 496 aaKnown RBP7.04□□□□□ -1.28
CLIP1-214ENST00000540539 C9orf106Q8NAJ2 232 aa7.04□□□□□ -1.28
CLIP1-214ENST00000540539 CXXC4Q9H2H0 198 aa7.04□□□□□ -1.28
CLIP1-214ENST00000540539 SEM1Q6ZVN7 128 aa7.03□□□□□ -1.28
CLIP1-214ENST00000540539 BBC3Q96PG8 261 aaPredicted RBP7.03□□□□□ -1.28
CLIP1-214ENST00000540539 FANCD2OSQ96PS1 177 aa7.03□□□□□ -1.28
CLIP1-214ENST00000540539 FAM208BQ5VWN6 2430 aa7.03□□□□□ -1.28
CLIP1-214ENST00000540539 MALRD1Q5VYJ5 2156 aa7.03□□□□□ -1.28
CLIP1-214ENST00000540539 HIVEP3Q5T1R4 2406 aa7.03□□□□□ -1.28
CLIP1-214ENST00000540539 LHBP01229 141 aa7.03□□□□□ -1.28
CLIP1-214ENST00000540539 BAALC-AS2P0C853 105 aa7.03□□□□□ -1.28
CLIP1-214ENST00000540539 BEAN1Q3B7T3 259 aa7.03□□□□□ -1.28
CLIP1-214ENST00000540539 SPANXN1Q5VSR9 72 aa7.03□□□□□ -1.28
CLIP1-214ENST00000540539 IGHV1-69DA0A0B4J2H0 117 aa7.02□□□□□ -1.29
CLIP1-214ENST00000540539 RPL39P62891 51 aaKnown RBP7.02□□□□□ -1.29
CLIP1-214ENST00000540539 LINC00528Q8N1L1 170 aa7.02□□□□□ -1.29
CLIP1-214ENST00000540539 ARHGAP32A7KAX9 2087 aa7.02□□□□□ -1.29
CLIP1-214ENST00000540539 IGLV2-23P01705 113 aa7.02□□□□□ -1.29
CLIP1-214ENST00000540539 HILS1P60008 231 aa7.02□□□□□ -1.29
CLIP1-214ENST00000540539 IGFL4Q6B9Z1 124 aa7.02□□□□□ -1.29
CLIP1-214ENST00000540539 CNEP1R1Q8N9A8 125 aa7.02□□□□□ -1.29
CLIP1-214ENST00000540539 LINC00846Q9NV44 126 aa7.02□□□□□ -1.29
CLIP1-214ENST00000540539 IGHV4-4A0A075B6R2 117 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms