RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 DNAH6Q9C0G6 4158 aa9.09□□□□□ -0.96
CCDC42-202ENST00000539522 TRAV4A0A0B4J268 109 aa9.08□□□□□ -0.96
CCDC42-202ENST00000539522 NUPR2A6NF83 97 aa9.08□□□□□ -0.96
CCDC42-202ENST00000539522 ATP5G1P05496 136 aa9.08□□□□□ -0.96
CCDC42-202ENST00000539522 CRYGDP07320 174 aa9.08□□□□□ -0.96
CCDC42-202ENST00000539522 COA6Q5JTJ3 125 aaKnown RBP9.08□□□□□ -0.96
CCDC42-202ENST00000539522 Q6ZSN1 163 aa9.08□□□□□ -0.96
CCDC42-202ENST00000539522 PRELID3AQ96N28 172 aa9.08□□□□□ -0.96
CCDC42-202ENST00000539522 LAMTOR2Q9Y2Q5 125 aa9.08□□□□□ -0.96
CCDC42-202ENST00000539522 C5orf52A6NGY3 159 aa9.07□□□□□ -0.96
CCDC42-202ENST00000539522 D6R8Y8 96 aa9.07□□□□□ -0.96
CCDC42-202ENST00000539522 PPP1R17O96001 155 aa9.07□□□□□ -0.96
CCDC42-202ENST00000539522 LINC00315P59091 139 aa9.07□□□□□ -0.96
CCDC42-202ENST00000539522 SNRPEP62304 92 aaKnown RBP9.07□□□□□ -0.96
CCDC42-202ENST00000539522 BAGE3Q86Y29 109 aa9.07□□□□□ -0.96
CCDC42-202ENST00000539522 IGLL5B9A064 214 aa9.06□□□□□ -0.96
CCDC42-202ENST00000539522 F5H768 121 aa9.06□□□□□ -0.96
CCDC42-202ENST00000539522 OR4C5Q8NGB2 326 aa9.06□□□□□ -0.96
CCDC42-202ENST00000539522 C18orf32Q8TCD1 76 aa9.06□□□□□ -0.96
CCDC42-202ENST00000539522 Q9UF83 564 aa9.06□□□□□ -0.96
CCDC42-202ENST00000539522 DNAH2Q9P225 4427 aa9.05□□□□□ -0.96
CCDC42-202ENST00000539522 A0A087WWL8 130 aa9.05□□□□□ -0.96
CCDC42-202ENST00000539522 F5H697 171 aa9.05□□□□□ -0.96
CCDC42-202ENST00000539522 CIDEAO60543 219 aa9.05□□□□□ -0.96
CCDC42-202ENST00000539522 MGPP08493 103 aa9.05□□□□□ -0.96
CCDC42-202ENST00000539522 TRAV26-1A0A087WT03 109 aa9.04□□□□□ -0.96
CCDC42-202ENST00000539522 IGHV3-73A0A0B4J1V6 119 aa9.04□□□□□ -0.96
CCDC42-202ENST00000539522 A0A0J9YY99 117 aa9.04□□□□□ -0.96
CCDC42-202ENST00000539522 RHODO00212 210 aa9.04□□□□□ -0.96
CCDC42-202ENST00000539522 TNFRSF6BO95407 300 aa9.04□□□□□ -0.96
CCDC42-202ENST00000539522 CRYBA4P53673 196 aa9.04□□□□□ -0.96
CCDC42-202ENST00000539522 ZFP2Q6ZN57 461 aa9.04□□□□□ -0.96
CCDC42-202ENST00000539522 NIT1Q86X76 327 aa9.04□□□□□ -0.96
CCDC42-202ENST00000539522 LOC100131303A0A0U1RQF7 123 aa9.03□□□□□ -0.96
CCDC42-202ENST00000539522 PRSS47A8MTI9 375 aa9.03□□□□□ -0.96
CCDC42-202ENST00000539522 SMKR1H3BMG3 65 aa9.03□□□□□ -0.96
CCDC42-202ENST00000539522 GATA1P15976 413 aaPredicted RBP9.03□□□□□ -0.96
CCDC42-202ENST00000539522 FAM74A4Q5TZK3 123 aa9.03□□□□□ -0.96
CCDC42-202ENST00000539522 PRSS3P2Q8NHM4 247 aa9.03□□□□□ -0.96
CCDC42-202ENST00000539522 H7C1H1 209 aa9.02□□□□□ -0.97
CCDC42-202ENST00000539522 NCR2O95944 276 aa9.02□□□□□ -0.97
CCDC42-202ENST00000539522 NPYP01303 97 aa9.02□□□□□ -0.97
CCDC42-202ENST00000539522 LINC00614P0C842 121 aa9.02□□□□□ -0.97
CCDC42-202ENST00000539522 ESDP10768 282 aa9.02□□□□□ -0.97
CCDC42-202ENST00000539522 IQCJQ1A5X6 159 aa9.02□□□□□ -0.97
CCDC42-202ENST00000539522 NRACQ8N912 160 aa9.02□□□□□ -0.97
CCDC42-202ENST00000539522 CHCHD1Q96BP2 118 aaKnown RBP9.02□□□□□ -0.97
CCDC42-202ENST00000539522 C20orf78Q9BR46 151 aa9.02□□□□□ -0.97
CCDC42-202ENST00000539522 MAP1LC3AQ9H492 121 aa9.02□□□□□ -0.97
CCDC42-202ENST00000539522 HHLA3Q9XRX5 114 aa9.02□□□□□ -0.97
CCDC42-202ENST00000539522 KLK5Q9Y337 293 aaPredicted RBP9.02□□□□□ -0.97
CCDC42-202ENST00000539522 A0A096LPF7 62 aa9.01□□□□□ -0.97
CCDC42-202ENST00000539522 TRAV26-2A0A0B4J265 109 aa9.01□□□□□ -0.97
CCDC42-202ENST00000539522 TRGV4A0A0C4DH28 118 aa9.01□□□□□ -0.97
CCDC42-202ENST00000539522 M0QY20 66 aa9.01□□□□□ -0.97
CCDC42-202ENST00000539522 SERF1AO75920 110 aa9.01□□□□□ -0.97
CCDC42-202ENST00000539522 GAS8-AS1O95177 125 aa9.01□□□□□ -0.97
CCDC42-202ENST00000539522 ZNF56Q15929 161 aa9.01□□□□□ -0.97
CCDC42-202ENST00000539522 SUMO4Q6EEV6 95 aa9.01□□□□□ -0.97
CCDC42-202ENST00000539522 SLC25A29Q8N8R3 303 aa9.01□□□□□ -0.97
CCDC42-202ENST00000539522 LOC389332A0A1B0GUA5 103 aa9□□□□□ -0.97
CCDC42-202ENST00000539522 LOC105371267A0A1B0GV96 52 aa9□□□□□ -0.97
CCDC42-202ENST00000539522 H3BNG1 76 aa9□□□□□ -0.97
CCDC42-202ENST00000539522 LINC00694P0DN24 101 aa9□□□□□ -0.97
CCDC42-202ENST00000539522 S100A2P29034 98 aa9□□□□□ -0.97
CCDC42-202ENST00000539522 HIST3H2BBQ8N257 126 aa9□□□□□ -0.97
CCDC42-202ENST00000539522 NXT2Q9NPJ8 142 aaKnown RBP9□□□□□ -0.97
CCDC42-202ENST00000539522 NIT2Q9NQR4 276 aa9□□□□□ -0.97
CCDC42-202ENST00000539522 PRO0255Q9UI72 69 aa9□□□□□ -0.97
CCDC42-202ENST00000539522 TRBV6-5A0A0K0K1A5 114 aa8.99□□□□□ -0.97
CCDC42-202ENST00000539522 NUPR1O60356 82 aa8.99□□□□□ -0.97
CCDC42-202ENST00000539522 P0DMU3 169 aa8.99□□□□□ -0.97
CCDC42-202ENST00000539522 FAM231AP0DMU4 169 aa8.99□□□□□ -0.97
CCDC42-202ENST00000539522 FAM231CP0DMU5 169 aa8.99□□□□□ -0.97
CCDC42-202ENST00000539522 PMCHP20382 165 aa8.99□□□□□ -0.97
CCDC42-202ENST00000539522 IFI27P40305 119 aaPredicted RBP8.99□□□□□ -0.97
CCDC42-202ENST00000539522 RPL32P62910 135 aaKnown RBP8.99□□□□□ -0.97
CCDC42-202ENST00000539522 FA2HQ7L5A8 372 aa8.99□□□□□ -0.97
CCDC42-202ENST00000539522 Q8N8P6 123 aa8.99□□□□□ -0.97
CCDC42-202ENST00000539522 LINC00476Q8WZB0 136 aa8.99□□□□□ -0.97
CCDC42-202ENST00000539522 ST20Q9HBF5 79 aa8.99□□□□□ -0.97
CCDC42-202ENST00000539522 TRBV6-4A0A1B0GX49 114 aa8.98□□□□□ -0.97
CCDC42-202ENST00000539522 K7EQD1 137 aa8.98□□□□□ -0.97
CCDC42-202ENST00000539522 VCYO14598 125 aa8.98□□□□□ -0.97
CCDC42-202ENST00000539522 PAX4O43316 350 aa8.98□□□□□ -0.97
CCDC42-202ENST00000539522 TCTAP57738 103 aa8.98□□□□□ -0.97
CCDC42-202ENST00000539522 LINC00310P59036 64 aa8.98□□□□□ -0.97
CCDC42-202ENST00000539522 SUMO2P61956 95 aaKnown RBP8.98□□□□□ -0.97
CCDC42-202ENST00000539522 RNASEKQ6P5S7 137 aaKnown RBP8.98□□□□□ -0.97
CCDC42-202ENST00000539522 TMEM18Q96B42 140 aa8.98□□□□□ -0.97
CCDC42-202ENST00000539522 RPL39LQ96EH5 51 aaKnown RBP8.98□□□□□ -0.97
CCDC42-202ENST00000539522 DNAJC30Q96LL9 226 aa8.98□□□□□ -0.97
CCDC42-202ENST00000539522 PACRGQ96M98 296 aaPredicted RBP8.98□□□□□ -0.97
CCDC42-202ENST00000539522 DNAH10Q8IVF4 4471 aa8.97□□□□□ -0.97
CCDC42-202ENST00000539522 FRAS1Q86XX4 4008 aa8.97□□□□□ -0.97
CCDC42-202ENST00000539522 LCE6AA0A183 80 aa8.97□□□□□ -0.97
CCDC42-202ENST00000539522 LINC01546A6NGU7 62 aa8.97□□□□□ -0.97
CCDC42-202ENST00000539522 HSBP1O75506 76 aa8.97□□□□□ -0.97
CCDC42-202ENST00000539522 NUDT3O95989 172 aa8.97□□□□□ -0.97
CCDC42-202ENST00000539522 URB1-AS1Q96HZ7 61 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms