RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 APCSP02743 223 aa10.4□□□□□ -0.74
CPSF1-208ENST00000532560 ARMS2P0C7Q2 107 aa10.4□□□□□ -0.74
CPSF1-208ENST00000532560 MED14OSP0DP75 135 aa10.4□□□□□ -0.74
CPSF1-208ENST00000532560 ESRGQ1W209 222 aa10.4□□□□□ -0.74
CPSF1-208ENST00000532560 CDPF1Q6NVV7 123 aa10.4□□□□□ -0.74
CPSF1-208ENST00000532560 Q6ZR54 194 aa10.4□□□□□ -0.74
CPSF1-208ENST00000532560 MRPL52Q86TS9 123 aaKnown RBP10.4□□□□□ -0.74
CPSF1-208ENST00000532560 UPK3BQ9BT76 320 aa10.4□□□□□ -0.74
CPSF1-208ENST00000532560 RPP21Q9H633 154 aaKnown RBP10.4□□□□□ -0.74
CPSF1-208ENST00000532560 MRPS16Q9Y3D3 137 aaKnown RBP10.4□□□□□ -0.74
CPSF1-208ENST00000532560 IGLV2-18A0A075B6J9 118 aa10.39□□□□□ -0.75
CPSF1-208ENST00000532560 K7EQD1 137 aa10.39□□□□□ -0.75
CPSF1-208ENST00000532560 SERF1AO75920 110 aa10.39□□□□□ -0.75
CPSF1-208ENST00000532560 SYT8Q8NBV8 401 aa10.39□□□□□ -0.75
CPSF1-208ENST00000532560 M0R2N4 97 aa10.38□□□□□ -0.75
CPSF1-208ENST00000532560 SCGB1D1O95968 90 aa10.38□□□□□ -0.75
CPSF1-208ENST00000532560 GYPEP15421 78 aa10.38□□□□□ -0.75
CPSF1-208ENST00000532560 SRIP30626 198 aa10.38□□□□□ -0.75
CPSF1-208ENST00000532560 ZFP2Q6ZN57 461 aa10.38□□□□□ -0.75
CPSF1-208ENST00000532560 DAZAP1Q96EP5 407 aaKnown RBP10.38□□□□□ -0.75
CPSF1-208ENST00000532560 SAMD10Q9BYL1 202 aa10.38□□□□□ -0.75
CPSF1-208ENST00000532560 PHLDA3Q9Y5J5 127 aa10.38□□□□□ -0.75
CPSF1-208ENST00000532560 TRBV6-4A0A1B0GX49 114 aa10.37□□□□□ -0.75
CPSF1-208ENST00000532560 C19orf71A6NCJ1 209 aa10.37□□□□□ -0.75
CPSF1-208ENST00000532560 P01737 135 aa10.37□□□□□ -0.75
CPSF1-208ENST00000532560 RAB4AP20338 218 aa10.37□□□□□ -0.75
CPSF1-208ENST00000532560 NEGR1Q7Z3B1 354 aa10.37□□□□□ -0.75
CPSF1-208ENST00000532560 ZNF664Q8N3J9 261 aa10.37□□□□□ -0.75
CPSF1-208ENST00000532560 SLC25A29Q8N8R3 303 aa10.37□□□□□ -0.75
CPSF1-208ENST00000532560 NUP35Q8NFH5 326 aa10.37□□□□□ -0.75
CPSF1-208ENST00000532560 IGHV3-73A0A0B4J1V6 119 aa10.36□□□□□ -0.75
CPSF1-208ENST00000532560 A0A1B0GW15 77 aa10.36□□□□□ -0.75
CPSF1-208ENST00000532560 A0A1B0GXF2 115 aa10.36□□□□□ -0.75
CPSF1-208ENST00000532560 RHODO00212 210 aa10.36□□□□□ -0.75
CPSF1-208ENST00000532560 SNAI2O43623 268 aa10.36□□□□□ -0.75
CPSF1-208ENST00000532560 NXPH4O95158 308 aa10.36□□□□□ -0.75
CPSF1-208ENST00000532560 RHOHQ15669 191 aa10.36□□□□□ -0.75
CPSF1-208ENST00000532560 UFSP1Q6NVU6 142 aa10.36□□□□□ -0.75
CPSF1-208ENST00000532560 MRPL54Q6P161 138 aaKnown RBP10.36□□□□□ -0.75
CPSF1-208ENST00000532560 SH2D6Q7Z4S9 175 aa10.36□□□□□ -0.75
CPSF1-208ENST00000532560 C14orf144Q96I85 54 aa10.36□□□□□ -0.75
CPSF1-208ENST00000532560 Q9H8V8 135 aa10.36□□□□□ -0.75
CPSF1-208ENST00000532560 LOC100131303A0A0U1RQF7 123 aa10.35□□□□□ -0.75
CPSF1-208ENST00000532560 NBDYA0A0U1RRE5 68 aa10.35□□□□□ -0.75
CPSF1-208ENST00000532560 HIGD1CA8MV81 97 aa10.35□□□□□ -0.75
CPSF1-208ENST00000532560 M0R381 172 aa10.35□□□□□ -0.75
CPSF1-208ENST00000532560 OR5AL1P0C617 328 aa10.35□□□□□ -0.75
CPSF1-208ENST00000532560 LINC00310P59036 64 aa10.35□□□□□ -0.75
CPSF1-208ENST00000532560 HBBP68871 147 aa10.35□□□□□ -0.75
CPSF1-208ENST00000532560 TEX43Q6ZNM6 134 aa10.35□□□□□ -0.75
CPSF1-208ENST00000532560 PRADC1Q9BSG0 188 aa10.35□□□□□ -0.75
CPSF1-208ENST00000532560 SSBP4Q9BWG4 385 aaPredicted RBP10.35□□□□□ -0.75
CPSF1-208ENST00000532560 JPT2Q9H910 190 aa10.35□□□□□ -0.75
CPSF1-208ENST00000532560 NUPR1O60356 82 aa10.34□□□□□ -0.75
CPSF1-208ENST00000532560 FOXA3P55318 350 aaPredicted RBP10.34□□□□□ -0.75
CPSF1-208ENST00000532560 LYPD5Q6UWN5 251 aa10.34□□□□□ -0.75
CPSF1-208ENST00000532560 PRO1933Q9H354 126 aa10.34□□□□□ -0.75
CPSF1-208ENST00000532560 RPS20P60866 119 aaKnown RBP10.33□□□□□ -0.76
CPSF1-208ENST00000532560 TTC32Q5I0X7 151 aa10.33□□□□□ -0.76
CPSF1-208ENST00000532560 LINC00336Q6ZUF6 198 aa10.33□□□□□ -0.76
CPSF1-208ENST00000532560 OR2D3Q8NGH3 330 aa10.33□□□□□ -0.76
CPSF1-208ENST00000532560 OR10AG1Q8NH19 301 aa10.33□□□□□ -0.76
CPSF1-208ENST00000532560 DNAH10Q8IVF4 4471 aa10.33□□□□□ -0.76
CPSF1-208ENST00000532560 RTL8CO15255 209 aa10.32□□□□□ -0.76
CPSF1-208ENST00000532560 AMTP48728 403 aa10.32□□□□□ -0.76
CPSF1-208ENST00000532560 TIRAPP58753 221 aa10.32□□□□□ -0.76
CPSF1-208ENST00000532560 FAM74A4Q5TZK3 123 aa10.32□□□□□ -0.76
CPSF1-208ENST00000532560 GATD1Q8NB37 220 aa10.32□□□□□ -0.76
CPSF1-208ENST00000532560 C18orf32Q8TCD1 76 aa10.32□□□□□ -0.76
CPSF1-208ENST00000532560 C2orf88Q9BSF0 95 aa10.32□□□□□ -0.76
CPSF1-208ENST00000532560 A0A087WWL8 130 aa10.31□□□□□ -0.76
CPSF1-208ENST00000532560 CRYGDP07320 174 aa10.31□□□□□ -0.76
CPSF1-208ENST00000532560 IGLC6P0CF74 106 aa10.31□□□□□ -0.76
CPSF1-208ENST00000532560 PMCHP20382 165 aa10.31□□□□□ -0.76
CPSF1-208ENST00000532560 C1orf134Q5TEV5 83 aa10.31□□□□□ -0.76
CPSF1-208ENST00000532560 Q6ZSN1 163 aa10.31□□□□□ -0.76
CPSF1-208ENST00000532560 BORCS7Q96B45 105 aa10.31□□□□□ -0.76
CPSF1-208ENST00000532560 ALKBH7Q9BT30 221 aaPredicted RBP10.31□□□□□ -0.76
CPSF1-208ENST00000532560 FRAS1Q86XX4 4008 aa10.31□□□□□ -0.76
CPSF1-208ENST00000532560 SIVA1O15304 175 aa10.3□□□□□ -0.76
CPSF1-208ENST00000532560 LINC00694P0DN24 101 aa10.3□□□□□ -0.76
CPSF1-208ENST00000532560 RIGQ13278 110 aa10.3□□□□□ -0.76
CPSF1-208ENST00000532560 SPANXN1Q5VSR9 72 aa10.3□□□□□ -0.76
CPSF1-208ENST00000532560 FER1L6-AS1Q8NA97 138 aa10.3□□□□□ -0.76
CPSF1-208ENST00000532560 CHCHD1Q96BP2 118 aaKnown RBP10.3□□□□□ -0.76
CPSF1-208ENST00000532560 VAMP8Q9BV40 100 aa10.3□□□□□ -0.76
CPSF1-208ENST00000532560 KRTAP1-5Q9BYS1 174 aa10.3□□□□□ -0.76
CPSF1-208ENST00000532560 HSBP1O75506 76 aa10.29□□□□□ -0.76
CPSF1-208ENST00000532560 PMCHL1Q16048 86 aa10.29□□□□□ -0.76
CPSF1-208ENST00000532560 C20orf202A1L168 122 aa10.28□□□□□ -0.76
CPSF1-208ENST00000532560 BTF3P20290 206 aaKnown RBP10.28□□□□□ -0.76
CPSF1-208ENST00000532560 KIAA1644Q3SXP7 199 aa10.28□□□□□ -0.76
CPSF1-208ENST00000532560 C6orf223Q8N319 242 aa10.28□□□□□ -0.76
CPSF1-208ENST00000532560 C14orf178Q8N769 122 aaPredicted RBP10.28□□□□□ -0.76
CPSF1-208ENST00000532560 AP1S3Q96PC3 154 aa10.28□□□□□ -0.76
CPSF1-208ENST00000532560 MIEN1Q9BRT3 115 aa10.28□□□□□ -0.76
CPSF1-208ENST00000532560 MUC21A0A0G2JKD1 596 aa10.27□□□□□ -0.77
CPSF1-208ENST00000532560 MUC21A0A140T8X8 626 aa10.27□□□□□ -0.77
CPSF1-208ENST00000532560 A0A1B0GUT8 65 aa10.27□□□□□ -0.77
CPSF1-208ENST00000532560 F2Z2F3 143 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms