RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 Q6ZTI0 123 aa15.17■□□□□ 0.02
VPS28-212ENST00000530836 RNF183Q96D59 192 aa15.17■□□□□ 0.02
VPS28-212ENST00000530836 RPL39LQ96EH5 51 aaKnown RBP15.17■□□□□ 0.02
VPS28-212ENST00000530836 IGLV2-18A0A075B6J9 118 aa15.17■□□□□ 0.02
VPS28-212ENST00000530836 IGHV1-24A0A0C4DH33 117 aa15.17■□□□□ 0.02
VPS28-212ENST00000530836 NHLRC4P0CG21 123 aaPredicted RBP15.17■□□□□ 0.02
VPS28-212ENST00000530836 MIFP14174 115 aa15.17■□□□□ 0.02
VPS28-212ENST00000530836 NIT2Q9NQR4 276 aa15.17■□□□□ 0.02
VPS28-212ENST00000530836 OR11H2Q8NH07 326 aa15.16■□□□□ 0.02
VPS28-212ENST00000530836 SMIM6P0DI80 62 aa15.15■□□□□ 0.02
VPS28-212ENST00000530836 TP53TG1Q9Y2A0 90 aa15.15■□□□□ 0.02
VPS28-212ENST00000530836 TGP01266 2768 aa15.15■□□□□ 0.02
VPS28-212ENST00000530836 IGHV3-53P01767 116 aa15.14■□□□□ 0.01
VPS28-212ENST00000530836 TRGV2A0A075B6R0 118 aa15.14■□□□□ 0.01
VPS28-212ENST00000530836 VCYO14598 125 aa15.14■□□□□ 0.01
VPS28-212ENST00000530836 C18orf15Q96N68 181 aa15.14■□□□□ 0.01
VPS28-212ENST00000530836 TM2D3Q9BRN9 247 aa15.14■□□□□ 0.01
VPS28-212ENST00000530836 IGHV3-73A0A0B4J1V6 119 aa15.13■□□□□ 0.01
VPS28-212ENST00000530836 LYRM9A8MSI8 78 aa15.13■□□□□ 0.01
VPS28-212ENST00000530836 LEPROTL1O95214 131 aa15.13■□□□□ 0.01
VPS28-212ENST00000530836 POLR2KP53803 58 aaKnown RBP15.13■□□□□ 0.01
VPS28-212ENST00000530836 LAGE3Q14657 143 aa15.13■□□□□ 0.01
VPS28-212ENST00000530836 HSPB8Q9UJY1 196 aa15.13■□□□□ 0.01
VPS28-212ENST00000530836 NBEAL2Q6ZNJ1 2754 aa15.12■□□□□ 0.01
VPS28-212ENST00000530836 GAGE12BA1L429 117 aa15.12■□□□□ 0.01
VPS28-212ENST00000530836 GAGE7O76087 117 aa15.12■□□□□ 0.01
VPS28-212ENST00000530836 GAGE12FP0CL80 117 aa15.12■□□□□ 0.01
VPS28-212ENST00000530836 GAGE12GP0CL81 117 aa15.12■□□□□ 0.01
VPS28-212ENST00000530836 GAGE12IP0CL82 117 aa15.12■□□□□ 0.01
VPS28-212ENST00000530836 PMCHL1Q16048 86 aa15.12■□□□□ 0.01
VPS28-212ENST00000530836 ORMDL2Q53FV1 153 aa15.12■□□□□ 0.01
VPS28-212ENST00000530836 DNAJC30Q96LL9 226 aa15.12■□□□□ 0.01
VPS28-212ENST00000530836 TMEM70Q9BUB7 260 aa15.12■□□□□ 0.01
VPS28-212ENST00000530836 COL7A1Q02388 2944 aa15.12■□□□□ 0.01
VPS28-212ENST00000530836 SDHAF1A6NFY7 115 aa15.11■□□□□ 0.01
VPS28-212ENST00000530836 TCAPO15273 167 aa15.11■□□□□ 0.01
VPS28-212ENST00000530836 HBDP02042 147 aa15.11■□□□□ 0.01
VPS28-212ENST00000530836 EMP1P54849 157 aa15.11■□□□□ 0.01
VPS28-212ENST00000530836 JOSD1Q15040 202 aaPredicted RBP15.11■□□□□ 0.01
VPS28-212ENST00000530836 LINC00612Q8N6U2 182 aa15.11■□□□□ 0.01
VPS28-212ENST00000530836 KIR2DL4Q99706 377 aa15.11■□□□□ 0.01
VPS28-212ENST00000530836 TRBV27A0A0K0K1C4 114 aa15.1■□□□□ 0.01
VPS28-212ENST00000530836 G0S2P27469 103 aa15.1■□□□□ 0.01
VPS28-212ENST00000530836 FCER1GP30273 86 aa15.1■□□□□ 0.01
VPS28-212ENST00000530836 SPATA25Q9BR10 227 aa15.1■□□□□ 0.01
VPS28-212ENST00000530836 ZMAT4Q9H898 229 aa15.1■□□□□ 0.01
VPS28-212ENST00000530836 ZNF479Q96JC4 524 aa15.1■□□□□ 0.01
VPS28-212ENST00000530836 TNFRSF18Q9Y5U5 241 aa15.1■□□□□ 0.01
VPS28-212ENST00000530836 TRBV10-1A0A0K0K1A3 114 aa15.09■□□□□ 0.01
VPS28-212ENST00000530836 Q8NAQ8 132 aa15.09■□□□□ 0.01
VPS28-212ENST00000530836 IGHV4-28A0A0C4DH34 117 aa15.08■□□□□ 0
VPS28-212ENST00000530836 PYY3Q5JQD4 70 aa15.08■□□□□ 0
VPS28-212ENST00000530836 LINC00518Q8N0U6 118 aa15.08■□□□□ 0
VPS28-212ENST00000530836 A0A096LNJ9 63 aa15.07■□□□□ 0
VPS28-212ENST00000530836 LINC01549A6NIU2 74 aa15.07■□□□□ 0
VPS28-212ENST00000530836 Q6ZSN1 163 aa15.07■□□□□ 0
VPS28-212ENST00000530836 NACAE9PAV3 2078 aa15.07■□□□□ 0
VPS28-212ENST00000530836 TEX48A0A1B0GUV7 120 aa15.06■□□□□ 0
VPS28-212ENST00000530836 KRTDAPP60985 99 aa15.06■□□□□ 0
VPS28-212ENST00000530836 HUWE1Q7Z6Z7 4374 aaKnown RBP15.06■□□□□ 0
VPS28-212ENST00000530836 I3L3M4 83 aa15.06■□□□□ 0
VPS28-212ENST00000530836 BTF3P20290 206 aaKnown RBP15.06■□□□□ 0
VPS28-212ENST00000530836 RETNQ9HD89 108 aa15.06■□□□□ 0
VPS28-212ENST00000530836 TRBV6-4A0A1B0GX49 114 aa15.05■□□□□ -0
VPS28-212ENST00000530836 K7EQD1 137 aa15.05■□□□□ -0
VPS28-212ENST00000530836 NUDT3O95989 172 aa15.05■□□□□ -0
VPS28-212ENST00000530836 FAM222AQ5U5X8 452 aa15.05■□□□□ -0
VPS28-212ENST00000530836 C12orf57Q99622 126 aa15.05■□□□□ -0
VPS28-212ENST00000530836 MAP1LC3CQ9BXW4 147 aa15.05■□□□□ -0
VPS28-212ENST00000530836 DKK2Q9UBU2 259 aa15.05■□□□□ -0
VPS28-212ENST00000530836 C3orf79P0CE67 100 aa15.04■□□□□ -0
VPS28-212ENST00000530836 DEFB130BP0DP73 79 aa15.04■□□□□ -0
VPS28-212ENST00000530836 DEFB130AP0DP74 79 aa15.04■□□□□ -0
VPS28-212ENST00000530836 NEXN-AS1Q8NBZ9 246 aa15.04■□□□□ -0
VPS28-212ENST00000530836 TRGV4A0A0C4DH28 118 aa15.03■□□□□ -0
VPS28-212ENST00000530836 RHOHQ15669 191 aa15.03■□□□□ -0
VPS28-212ENST00000530836 SCGB1D1O95968 90 aa15.03■□□□□ -0
VPS28-212ENST00000530836 SPART-AS1P0CW21 52 aa15.03■□□□□ -0
VPS28-212ENST00000530836 TRBV7-3A0A075B6L6 115 aa15.02□□□□□ -0.01
VPS28-212ENST00000530836 P0DMU3 169 aa15.02□□□□□ -0.01
VPS28-212ENST00000530836 FAM231AP0DMU4 169 aa15.02□□□□□ -0.01
VPS28-212ENST00000530836 FAM231CP0DMU5 169 aa15.02□□□□□ -0.01
VPS28-212ENST00000530836 RPL36AP83881 106 aaKnown RBP15.02□□□□□ -0.01
VPS28-212ENST00000530836 RPL36ALQ969Q0 106 aaKnown RBP15.02□□□□□ -0.01
VPS28-212ENST00000530836 TENM3Q9P273 2699 aa15.02□□□□□ -0.01
VPS28-212ENST00000530836 ATP5LO75964 103 aa15.01□□□□□ -0.01
VPS28-212ENST00000530836 SLC25A29Q8N8R3 303 aa15.01□□□□□ -0.01
VPS28-212ENST00000530836 SYS1-DBNDD2H3BUS1 97 aa15□□□□□ -0.01
VPS28-212ENST00000530836 FHL2Q14192 279 aa15□□□□□ -0.01
VPS28-212ENST00000530836 NEGR1Q7Z3B1 354 aa15□□□□□ -0.01
VPS28-212ENST00000530836 TOMM6Q96B49 74 aa15□□□□□ -0.01
VPS28-212ENST00000530836 PRADC1Q9BSG0 188 aa15□□□□□ -0.01
VPS28-212ENST00000530836 DAD1P61803 113 aa14.99□□□□□ -0.01
VPS28-212ENST00000530836 PET117Q6UWS5 81 aa14.99□□□□□ -0.01
VPS28-212ENST00000530836 SPATA12Q7Z6I5 190 aa14.99□□□□□ -0.01
VPS28-212ENST00000530836 C20orf202A1L168 122 aa14.99□□□□□ -0.01
VPS28-212ENST00000530836 LINC00173Q6ZV60 143 aa14.99□□□□□ -0.01
VPS28-212ENST00000530836 IFI27L1Q96BM0 104 aa14.99□□□□□ -0.01
VPS28-212ENST00000530836 CYSLTR1Q9Y271 337 aa14.99□□□□□ -0.01
VPS28-212ENST00000530836 C2orf66Q6UXQ4 117 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms