RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 RBMY1BA6NDE4 496 aaKnown RBP10.89□□□□□ -0.67
NUP54-217ENST00000514987 RBMY1EA6NEQ0 496 aaKnown RBP10.89□□□□□ -0.67
NUP54-217ENST00000514987 RBMY1DP0C7P1 496 aaKnown RBP10.89□□□□□ -0.67
NUP54-217ENST00000514987 CMC4P56277 68 aaPredicted RBP10.89□□□□□ -0.67
NUP54-217ENST00000514987 WFDC11Q8NEX6 87 aa10.89□□□□□ -0.67
NUP54-217ENST00000514987 VPS13CQ709C8 3753 aa10.88□□□□□ -0.67
NUP54-217ENST00000514987 ZNF815PA8K554 130 aa10.88□□□□□ -0.67
NUP54-217ENST00000514987 CRYBA4P53673 196 aa10.88□□□□□ -0.67
NUP54-217ENST00000514987 FHL3Q13643 280 aa10.88□□□□□ -0.67
NUP54-217ENST00000514987 CD300EQ496F6 205 aaPredicted RBP10.88□□□□□ -0.67
NUP54-217ENST00000514987 NFE4Q86UQ8 179 aa10.88□□□□□ -0.67
NUP54-217ENST00000514987 PHLDA1Q8WV24 401 aaPredicted RBP10.88□□□□□ -0.67
NUP54-217ENST00000514987 NHP2Q9NX24 153 aaKnown RBP10.88□□□□□ -0.67
NUP54-217ENST00000514987 AGRNO00468 2067 aa10.88□□□□□ -0.67
NUP54-217ENST00000514987 CRYBG3Q68DQ2 2970 aa10.88□□□□□ -0.67
NUP54-217ENST00000514987 DOPEY2Q9Y3R5 2298 aa10.87□□□□□ -0.67
NUP54-217ENST00000514987 PTPN13Q12923 2485 aa10.87□□□□□ -0.67
NUP54-217ENST00000514987 LINC01587Q99440 93 aa10.87□□□□□ -0.67
NUP54-217ENST00000514987 PYGO1Q9Y3Y4 419 aa10.87□□□□□ -0.67
NUP54-217ENST00000514987 TNFRSF18Q9Y5U5 241 aa10.87□□□□□ -0.67
NUP54-217ENST00000514987 CREBBPQ92793 2442 aa10.87□□□□□ -0.67
NUP54-217ENST00000514987 TMEM238LA0A1B0GVL6 79 aa10.86□□□□□ -0.67
NUP54-217ENST00000514987 A0A1B0GWB2 263 aa10.86□□□□□ -0.67
NUP54-217ENST00000514987 A6NJY4 79 aa10.86□□□□□ -0.67
NUP54-217ENST00000514987 HTN1P15515 57 aa10.86□□□□□ -0.67
NUP54-217ENST00000514987 DNAJC30Q96LL9 226 aa10.86□□□□□ -0.67
NUP54-217ENST00000514987 SPCS1Q9Y6A9 102 aa10.86□□□□□ -0.67
NUP54-217ENST00000514987 ZFHX3Q15911 3703 aa10.86□□□□□ -0.67
NUP54-217ENST00000514987 ZFYVE26Q68DK2 2539 aa10.86□□□□□ -0.67
NUP54-217ENST00000514987 CCL24O00175 119 aa10.86□□□□□ -0.67
NUP54-217ENST00000514987 P0DMU3 169 aa10.86□□□□□ -0.67
NUP54-217ENST00000514987 FAM231AP0DMU4 169 aa10.86□□□□□ -0.67
NUP54-217ENST00000514987 FAM231CP0DMU5 169 aa10.86□□□□□ -0.67
NUP54-217ENST00000514987 C12orf74Q32Q52 190 aa10.86□□□□□ -0.67
NUP54-217ENST00000514987 BEAN1Q3B7T3 259 aa10.86□□□□□ -0.67
NUP54-217ENST00000514987 SCGB1D4Q6XE38 83 aa10.86□□□□□ -0.67
NUP54-217ENST00000514987 C16orf95Q9H693 158 aa10.86□□□□□ -0.67
NUP54-217ENST00000514987 POLQO75417 2590 aa10.85□□□□□ -0.67
NUP54-217ENST00000514987 TMEM170BQ5T4T1 132 aa10.85□□□□□ -0.67
NUP54-217ENST00000514987 RNASE8Q8TDE3 154 aaKnown RBP10.85□□□□□ -0.67
NUP54-217ENST00000514987 VCX2Q9H322 139 aa10.85□□□□□ -0.67
NUP54-217ENST00000514987 TSSC4Q9Y5U2 329 aaPredicted RBP10.85□□□□□ -0.67
NUP54-217ENST00000514987 MAP1AP78559 2803 aaPredicted RBP10.84□□□□□ -0.67
NUP54-217ENST00000514987 STHQ8IWL8 128 aa10.84□□□□□ -0.67
NUP54-217ENST00000514987 C11orf72Q8NBR9 251 aa10.84□□□□□ -0.67
NUP54-217ENST00000514987 RNASE1P07998 156 aaKnown RBP10.83□□□□□ -0.68
NUP54-217ENST00000514987 OCIAD2Q56VL3 154 aa10.83□□□□□ -0.68
NUP54-217ENST00000514987 CFAP126Q5VTH2 177 aa10.83□□□□□ -0.68
NUP54-217ENST00000514987 IGLL5B9A064 214 aa10.82□□□□□ -0.68
NUP54-217ENST00000514987 K7ERU9 68 aa10.82□□□□□ -0.68
NUP54-217ENST00000514987 RS1O15537 224 aa10.82□□□□□ -0.68
NUP54-217ENST00000514987 IGHV3-53P01767 116 aa10.82□□□□□ -0.68
NUP54-217ENST00000514987 ODF3L2Q3SX64 289 aa10.82□□□□□ -0.68
NUP54-217ENST00000514987 ZNRF2Q8NHG8 242 aa10.82□□□□□ -0.68
NUP54-217ENST00000514987 NAA38Q9BRA0 125 aaKnown RBP10.82□□□□□ -0.68
NUP54-217ENST00000514987 ESM1Q9NQ30 184 aa10.82□□□□□ -0.68
NUP54-217ENST00000514987 SPANXB1Q9NS25 103 aaPredicted RBP10.82□□□□□ -0.68
NUP54-217ENST00000514987 IGLV4-3A0A075B6K6 122 aa10.82□□□□□ -0.68
NUP54-217ENST00000514987 K7ERJ3 54 aa10.82□□□□□ -0.68
NUP54-217ENST00000514987 LEPROTO15243 131 aa10.82□□□□□ -0.68
NUP54-217ENST00000514987 CD28P10747 220 aa10.82□□□□□ -0.68
NUP54-217ENST00000514987 SRSF9Q13242 221 aaKnown RBP eCLIP10.82□□□□□ -0.68
NUP54-217ENST00000514987 YAE1D1Q9NRH1 226 aa10.82□□□□□ -0.68
NUP54-217ENST00000514987 LGALS3P17931 250 aaKnown RBP10.81□□□□□ -0.68
NUP54-217ENST00000514987 EMP1P54849 157 aa10.81□□□□□ -0.68
NUP54-217ENST00000514987 RBX1P62877 108 aa10.81□□□□□ -0.68
NUP54-217ENST00000514987 DEFB104AQ8WTQ1 72 aa10.81□□□□□ -0.68
NUP54-217ENST00000514987 PLEKHB2Q96CS7 222 aa10.81□□□□□ -0.68
NUP54-217ENST00000514987 ZNF479Q96JC4 524 aa10.81□□□□□ -0.68
NUP54-217ENST00000514987 SPANXA1Q9NS26 97 aa10.81□□□□□ -0.68
NUP54-217ENST00000514987 IGHV3-73A0A0B4J1V6 119 aa10.8□□□□□ -0.68
NUP54-217ENST00000514987 A0A0J9YY99 117 aa10.8□□□□□ -0.68
NUP54-217ENST00000514987 TMEM223A0PJW6 202 aa10.8□□□□□ -0.68
NUP54-217ENST00000514987 J3QKU1 62 aa10.8□□□□□ -0.68
NUP54-217ENST00000514987 J3QQQ9 107 aa10.8□□□□□ -0.68
NUP54-217ENST00000514987 RRN3P1Q2M238 152 aa10.8□□□□□ -0.68
NUP54-217ENST00000514987 ZANQ9Y493 2812 aa10.8□□□□□ -0.68
NUP54-217ENST00000514987 A0A1W2PRX2 142 aa10.79□□□□□ -0.68
NUP54-217ENST00000514987 KRTAP1-1Q07627 177 aa10.79□□□□□ -0.68
NUP54-217ENST00000514987 AMELXQ99217 191 aa10.79□□□□□ -0.68
NUP54-217ENST00000514987 CITED2Q99967 270 aaPredicted RBP10.79□□□□□ -0.68
NUP54-217ENST00000514987 SORL1Q92673 2214 aa10.79□□□□□ -0.68
NUP54-217ENST00000514987 SLC25A29Q8N8R3 303 aa10.78□□□□□ -0.68
NUP54-217ENST00000514987 LINC01006Q8NI28 216 aa10.78□□□□□ -0.68
NUP54-217ENST00000514987 ZNF418Q8TF45 676 aaPredicted RBP10.78□□□□□ -0.68
NUP54-217ENST00000514987 FAM110AQ9BQ89 295 aa10.78□□□□□ -0.68
NUP54-217ENST00000514987 XCL2Q9UBD3 114 aa10.78□□□□□ -0.68
NUP54-217ENST00000514987 MXRA5Q9NR99 2828 aa10.78□□□□□ -0.68
NUP54-217ENST00000514987 ABCA12Q86UK0 2595 aa10.78□□□□□ -0.68
NUP54-217ENST00000514987 TEX15Q9BXT5 2789 aa10.78□□□□□ -0.68
NUP54-217ENST00000514987 PLA2G2AP14555 144 aa10.77□□□□□ -0.68
NUP54-217ENST00000514987 ZNF22P17026 224 aaPredicted RBP10.77□□□□□ -0.68
NUP54-217ENST00000514987 PROK1P58294 105 aa10.77□□□□□ -0.68
NUP54-217ENST00000514987 OPRPNQ99935 248 aaPredicted RBP10.77□□□□□ -0.68
NUP54-217ENST00000514987 MRPL16Q9NX20 251 aaKnown RBP10.77□□□□□ -0.68
NUP54-217ENST00000514987 UBE2D1P51668 147 aa10.77□□□□□ -0.69
NUP54-217ENST00000514987 MRPS36P82909 103 aaKnown RBP10.77□□□□□ -0.69
NUP54-217ENST00000514987 COTL1Q14019 142 aa10.77□□□□□ -0.69
NUP54-217ENST00000514987 IL17DQ8TAD2 202 aa10.77□□□□□ -0.69
NUP54-217ENST00000514987 NDUFA7O95182 113 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms