RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 CEND1Q8N111 149 aa5.91□□□□□ -1.46
SCN1A-207ENST00000507401 ORMDL3Q8N138 153 aa5.91□□□□□ -1.46
SCN1A-207ENST00000507401 IFI27L1Q96BM0 104 aa5.91□□□□□ -1.46
SCN1A-207ENST00000507401 ZNF479Q96JC4 524 aa5.91□□□□□ -1.46
SCN1A-207ENST00000507401 C1QTNF4Q9BXJ3 329 aa5.91□□□□□ -1.46
SCN1A-207ENST00000507401 KRTAP9-3Q9BYQ3 159 aa5.91□□□□□ -1.46
SCN1A-207ENST00000507401 TMEM14CQ9P0S9 112 aa5.91□□□□□ -1.46
SCN1A-207ENST00000507401 TRBV20-1A0A075B6N2 111 aa5.9□□□□□ -1.46
SCN1A-207ENST00000507401 APOMO95445 188 aa5.9□□□□□ -1.46
SCN1A-207ENST00000507401 Q6Q795 121 aa5.9□□□□□ -1.46
SCN1A-207ENST00000507401 TMEM75Q8N9X5 138 aa5.9□□□□□ -1.46
SCN1A-207ENST00000507401 PPDPFLQ8WWR9 84 aa5.9□□□□□ -1.46
SCN1A-207ENST00000507401 RNF183Q96D59 192 aa5.9□□□□□ -1.46
SCN1A-207ENST00000507401 FXYD5Q96DB9 178 aa5.9□□□□□ -1.46
SCN1A-207ENST00000507401 SLC25A39Q9BZJ4 359 aaPredicted RBP5.9□□□□□ -1.46
SCN1A-207ENST00000507401 MAP6D1Q9H9H5 199 aa5.9□□□□□ -1.46
SCN1A-207ENST00000507401 NXT2Q9NPJ8 142 aaKnown RBP5.9□□□□□ -1.46
SCN1A-207ENST00000507401 SACSQ9NZJ4 4579 aa5.9□□□□□ -1.46
SCN1A-207ENST00000507401 STARD9Q9P2P6 4700 aa5.9□□□□□ -1.47
SCN1A-207ENST00000507401 LYSTQ99698 3801 aa5.89□□□□□ -1.47
SCN1A-207ENST00000507401 DNAH1Q9P2D7 4330 aa5.89□□□□□ -1.47
SCN1A-207ENST00000507401 IGHV3-49A0A0A0MS15 119 aa5.89□□□□□ -1.47
SCN1A-207ENST00000507401 LINC01549A6NIU2 74 aa5.89□□□□□ -1.47
SCN1A-207ENST00000507401 IGLL5B9A064 214 aa5.89□□□□□ -1.47
SCN1A-207ENST00000507401 IGKV1-17P01599 117 aa5.89□□□□□ -1.47
SCN1A-207ENST00000507401 TCRAP04437 139 aa5.89□□□□□ -1.47
SCN1A-207ENST00000507401 FOXI1Q12951 378 aa5.89□□□□□ -1.47
SCN1A-207ENST00000507401 RRN3P1Q2M238 152 aa5.89□□□□□ -1.47
SCN1A-207ENST00000507401 LCE5AQ5TCM9 118 aa5.89□□□□□ -1.47
SCN1A-207ENST00000507401 COX8CQ7Z4L0 72 aa5.89□□□□□ -1.47
SCN1A-207ENST00000507401 PHLDA1Q8WV24 401 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-207ENST00000507401 PGLYRP4Q96LB8 373 aa5.89□□□□□ -1.47
SCN1A-207ENST00000507401 METTL26Q96S19 204 aa5.89□□□□□ -1.47
SCN1A-207ENST00000507401 TRGV9Q99603 122 aa5.89□□□□□ -1.47
SCN1A-207ENST00000507401 CHAC1Q9BUX1 264 aa5.89□□□□□ -1.47
SCN1A-207ENST00000507401 MRPL36Q9P0J6 103 aaKnown RBP5.89□□□□□ -1.47
SCN1A-207ENST00000507401 RYR2Q92736 4967 aa5.89□□□□□ -1.47
SCN1A-207ENST00000507401 IGHV3OR16-13A0A075B7E8 117 aa5.88□□□□□ -1.47
SCN1A-207ENST00000507401 IGHV3-74A0A0B4J1X5 117 aa5.88□□□□□ -1.47
SCN1A-207ENST00000507401 PGPA6NDG6 321 aa5.88□□□□□ -1.47
SCN1A-207ENST00000507401 DPM2O94777 84 aa5.88□□□□□ -1.47
SCN1A-207ENST00000507401 SPINK8P0C7L1 97 aa5.88□□□□□ -1.47
SCN1A-207ENST00000507401 GCSHP23434 173 aa5.88□□□□□ -1.47
SCN1A-207ENST00000507401 PLNP26678 52 aa5.88□□□□□ -1.47
SCN1A-207ENST00000507401 RPL11P62913 178 aaKnown RBP5.88□□□□□ -1.47
SCN1A-207ENST00000507401 MRPL23Q16540 153 aaKnown RBP5.88□□□□□ -1.47
SCN1A-207ENST00000507401 FAM104BQ5XKR9 115 aa5.88□□□□□ -1.47
SCN1A-207ENST00000507401 LINC00173Q6ZV60 143 aa5.88□□□□□ -1.47
SCN1A-207ENST00000507401 Q86TA4 180 aa5.88□□□□□ -1.47
SCN1A-207ENST00000507401 APRG1Q8IVJ8 170 aa5.88□□□□□ -1.47
SCN1A-207ENST00000507401 IGKV3-7A0A075B6H7 116 aa5.87□□□□□ -1.47
SCN1A-207ENST00000507401 K7EMI3 77 aa5.87□□□□□ -1.47
SCN1A-207ENST00000507401 K7EQG2 157 aa5.87□□□□□ -1.47
SCN1A-207ENST00000507401 IGKCP01834 107 aa5.87□□□□□ -1.47
SCN1A-207ENST00000507401 RPL35AP18077 110 aaKnown RBP5.87□□□□□ -1.47
SCN1A-207ENST00000507401 NMUP48645 174 aa5.87□□□□□ -1.47
SCN1A-207ENST00000507401 CACNG7P62955 275 aa5.87□□□□□ -1.47
SCN1A-207ENST00000507401 PDE6HQ13956 83 aa5.87□□□□□ -1.47
SCN1A-207ENST00000507401 DEFB135Q30KP9 77 aa5.87□□□□□ -1.47
SCN1A-207ENST00000507401 OR8A1Q8NGG7 326 aa5.87□□□□□ -1.47
SCN1A-207ENST00000507401 RAB37Q96AX2 223 aa5.87□□□□□ -1.47
SCN1A-207ENST00000507401 PRELID3AQ96N28 172 aa5.87□□□□□ -1.47
SCN1A-207ENST00000507401 ANAPC13Q9BS18 74 aa5.87□□□□□ -1.47
SCN1A-207ENST00000507401 IGKV1OR2-108A0A075B7D4 117 aa5.86□□□□□ -1.47
SCN1A-207ENST00000507401 A0A0J9YWU9 116 aa5.86□□□□□ -1.47
SCN1A-207ENST00000507401 PLA2G1BP04054 148 aaKnown RBP5.86□□□□□ -1.47
SCN1A-207ENST00000507401 IL4P05112 153 aa5.86□□□□□ -1.47
SCN1A-207ENST00000507401 FCER1GP30273 86 aa5.86□□□□□ -1.47
SCN1A-207ENST00000507401 Q6ZUT4 128 aa5.86□□□□□ -1.47
SCN1A-207ENST00000507401 LINC00305Q7Z4B0 112 aa5.86□□□□□ -1.47
SCN1A-207ENST00000507401 TEN1Q86WV5 123 aa5.86□□□□□ -1.47
SCN1A-207ENST00000507401 NPIPB3Q92617 1050 aa5.86□□□□□ -1.47
SCN1A-207ENST00000507401 TMEM126AQ9H061 195 aa5.86□□□□□ -1.47
SCN1A-207ENST00000507401 MAP1LC3AQ9H492 121 aa5.86□□□□□ -1.47
SCN1A-207ENST00000507401 PRO0461Q9UI25 63 aa5.86□□□□□ -1.47
SCN1A-207ENST00000507401 TRBV25-1A0A075B6N4 114 aa5.85□□□□□ -1.47
SCN1A-207ENST00000507401 IGHV3-66A0A0C4DH42 116 aa5.85□□□□□ -1.47
SCN1A-207ENST00000507401 GAGE12JA6NER3 117 aa5.85□□□□□ -1.47
SCN1A-207ENST00000507401 NUPR2A6NF83 97 aa5.85□□□□□ -1.47
SCN1A-207ENST00000507401 BUB3O43684 328 aa5.85□□□□□ -1.47
SCN1A-207ENST00000507401 GAGE7O76087 117 aa5.85□□□□□ -1.47
SCN1A-207ENST00000507401 GAGE12FP0CL80 117 aa5.85□□□□□ -1.47
SCN1A-207ENST00000507401 GAGE12GP0CL81 117 aa5.85□□□□□ -1.47
SCN1A-207ENST00000507401 GAGE12IP0CL82 117 aa5.85□□□□□ -1.47
SCN1A-207ENST00000507401 DEFB131AP59861 70 aa5.85□□□□□ -1.47
SCN1A-207ENST00000507401 GAGE4Q13068 117 aa5.85□□□□□ -1.47
SCN1A-207ENST00000507401 WFDC2Q14508 124 aa5.85□□□□□ -1.47
SCN1A-207ENST00000507401 C12orf74Q32Q52 190 aa5.85□□□□□ -1.47
SCN1A-207ENST00000507401 ETDBQ3ZM63 59 aa5.85□□□□□ -1.47
SCN1A-207ENST00000507401 CEMP1Q6PRD7 247 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-207ENST00000507401 SYT8Q8NBV8 401 aa5.85□□□□□ -1.47
SCN1A-207ENST00000507401 DCANP1Q8TF63 244 aa5.85□□□□□ -1.47
SCN1A-207ENST00000507401 LINC01600Q96MT4 127 aa5.85□□□□□ -1.47
SCN1A-207ENST00000507401 NHP2Q9NX24 153 aaKnown RBP5.85□□□□□ -1.47
SCN1A-207ENST00000507401 PLECQ15149 4684 aaKnown RBP5.85□□□□□ -1.47
SCN1A-207ENST00000507401 A0A096LNJ9 63 aa5.84□□□□□ -1.47
SCN1A-207ENST00000507401 TRAV12-1A0A0B4J245 112 aa5.84□□□□□ -1.47
SCN1A-207ENST00000507401 FXYD2P54710 66 aa5.84□□□□□ -1.47
SCN1A-207ENST00000507401 ODF1Q14990 250 aa5.84□□□□□ -1.47
SCN1A-207ENST00000507401 CFAP126Q5VTH2 177 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms