RNA–Protein interactions for RNA: ENST00000495522.1

CALD1-222, Transcript of caldesmon 1, human

TSL 5 BASIC

Gene CALD1, Length 2,199 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-222	ENST00000495522	ABCA12	Q86UK0	2595 aa		11.31	□□□□□ -0.6
CALD1-222	ENST00000495522		A8MTW9	85 aa		11.31	□□□□□ -0.6
CALD1-222	ENST00000495522		J3QR89	54 aa		11.31	□□□□□ -0.6
CALD1-222	ENST00000495522	TSHB	P01222	138 aa		11.31	□□□□□ -0.6
CALD1-222	ENST00000495522	ZNF876P	Q49A33	203 aa		11.31	□□□□□ -0.6
CALD1-222	ENST00000495522	TRPT1	Q86TN4	253 aa	Known RBP	11.31	□□□□□ -0.6
CALD1-222	ENST00000495522	TIMM17A	Q99595	171 aa		11.31	□□□□□ -0.6
CALD1-222	ENST00000495522	MYMX	A0A1B0GTQ4	84 aa		11.31	□□□□□ -0.6
CALD1-222	ENST00000495522		E9PLD3	99 aa		11.31	□□□□□ -0.6
CALD1-222	ENST00000495522	KHDC1L	Q5JSQ8	128 aa		11.31	□□□□□ -0.6
CALD1-222	ENST00000495522	MORN3	Q6PF18	240 aa	Predicted RBP	11.31	□□□□□ -0.6
CALD1-222	ENST00000495522	RPL39	P62891	51 aa	Known RBP	11.3	□□□□□ -0.6
CALD1-222	ENST00000495522	PMVK	Q15126	192 aa		11.3	□□□□□ -0.6
CALD1-222	ENST00000495522	PAPPA-AS1	Q5QFB9	102 aa		11.3	□□□□□ -0.6
CALD1-222	ENST00000495522	TMEM86B	Q8N661	226 aa		11.3	□□□□□ -0.6
CALD1-222	ENST00000495522	ZNF256	Q9Y2P7	627 aa	Predicted RBP	11.3	□□□□□ -0.6
CALD1-222	ENST00000495522		A0A1W2PPM0	123 aa		11.3	□□□□□ -0.6
CALD1-222	ENST00000495522		H3BMM0	161 aa		11.3	□□□□□ -0.6
CALD1-222	ENST00000495522	RBMY1A1	P0DJD3	496 aa	Known RBP	11.3	□□□□□ -0.6
CALD1-222	ENST00000495522	RBMY1C	P0DJD4	496 aa		11.3	□□□□□ -0.6
CALD1-222	ENST00000495522	RBMY1F	Q15415	496 aa	Known RBP	11.3	□□□□□ -0.6
CALD1-222	ENST00000495522	DEFB104A	Q8WTQ1	72 aa		11.3	□□□□□ -0.6
CALD1-222	ENST00000495522	TSPAN13	O95857	204 aa		11.29	□□□□□ -0.6
CALD1-222	ENST00000495522	TMEM61	Q8N0U2	210 aa		11.29	□□□□□ -0.6
CALD1-222	ENST00000495522	DUX3	Q96PT4	197 aa		11.29	□□□□□ -0.6
CALD1-222	ENST00000495522	PRADC1	Q9BSG0	188 aa		11.29	□□□□□ -0.6
CALD1-222	ENST00000495522	GAGE12H	A6NDE8	117 aa		11.28	□□□□□ -0.6
CALD1-222	ENST00000495522	RHOH	Q15669	191 aa		11.28	□□□□□ -0.6
CALD1-222	ENST00000495522	NSUN5P1	Q3KNT7	163 aa		11.28	□□□□□ -0.6
CALD1-222	ENST00000495522	TEX29	Q8N6K0	151 aa		11.28	□□□□□ -0.6
CALD1-222	ENST00000495522	KLHL30-AS1	Q8NEE0	82 aa		11.28	□□□□□ -0.6
CALD1-222	ENST00000495522	HIST1H4G	Q99525	98 aa		11.28	□□□□□ -0.6
CALD1-222	ENST00000495522	NHP2	Q9NX24	153 aa	Known RBP	11.28	□□□□□ -0.6
CALD1-222	ENST00000495522	GCN1	Q92616	2671 aa	Known RBP	11.28	□□□□□ -0.6
CALD1-222	ENST00000495522	IGLV4-69	A0A075B6H9	119 aa		11.28	□□□□□ -0.6
CALD1-222	ENST00000495522	DYNLRB2	Q8TF09	96 aa		11.28	□□□□□ -0.6
CALD1-222	ENST00000495522	DLX4	Q92988	240 aa	Predicted RBP	11.28	□□□□□ -0.6
CALD1-222	ENST00000495522	PGPEP1	Q9NXJ5	209 aa		11.28	□□□□□ -0.6
CALD1-222	ENST00000495522	SAMD5	Q5TGI4	173 aa		11.27	□□□□□ -0.6
CALD1-222	ENST00000495522	SORL1	Q92673	2214 aa		11.27	□□□□□ -0.61
CALD1-222	ENST00000495522	RBMY1B	A6NDE4	496 aa	Known RBP	11.27	□□□□□ -0.61
CALD1-222	ENST00000495522	RBMY1E	A6NEQ0	496 aa	Known RBP	11.27	□□□□□ -0.61
CALD1-222	ENST00000495522	C11orf86	A6NJI1	115 aa		11.27	□□□□□ -0.61
CALD1-222	ENST00000495522		K7ERJ3	54 aa		11.27	□□□□□ -0.61
CALD1-222	ENST00000495522	RBMY1D	P0C7P1	496 aa	Known RBP	11.27	□□□□□ -0.61
CALD1-222	ENST00000495522	FABP2	P12104	132 aa		11.27	□□□□□ -0.61
CALD1-222	ENST00000495522	PHLDA1	Q8WV24	401 aa	Predicted RBP	11.27	□□□□□ -0.61
CALD1-222	ENST00000495522	APC	P25054	2843 aa		11.26	□□□□□ -0.61
CALD1-222	ENST00000495522	TRBV7-3	A0A075B6L6	115 aa		11.26	□□□□□ -0.61
CALD1-222	ENST00000495522	HTN1	P15515	57 aa		11.26	□□□□□ -0.61
CALD1-222	ENST00000495522	HERVK_113	P61574	105 aa		11.26	□□□□□ -0.61
CALD1-222	ENST00000495522	GEMIN7	Q9H840	131 aa	Known RBP	11.26	□□□□□ -0.61
CALD1-222	ENST00000495522	SPCS1	Q9Y6A9	102 aa		11.26	□□□□□ -0.61
CALD1-222	ENST00000495522		I3L3M4	83 aa		11.26	□□□□□ -0.61
CALD1-222	ENST00000495522		Q6ZSV7	163 aa		11.26	□□□□□ -0.61
CALD1-222	ENST00000495522	MAP6D1	Q9H9H5	199 aa		11.26	□□□□□ -0.61
CALD1-222	ENST00000495522	EDA2R	Q9HAV5	297 aa		11.26	□□□□□ -0.61
CALD1-222	ENST00000495522	TEX48	A0A1B0GUV7	120 aa		11.25	□□□□□ -0.61
CALD1-222	ENST00000495522	ZNF815P	A8K554	130 aa		11.25	□□□□□ -0.61
CALD1-222	ENST00000495522	DEFB114	Q30KQ6	69 aa		11.25	□□□□□ -0.61
CALD1-222	ENST00000495522	SPAG8	Q99932	426 aa	Predicted RBP	11.25	□□□□□ -0.61
CALD1-222	ENST00000495522	EMP1	P54849	157 aa		11.24	□□□□□ -0.61
CALD1-222	ENST00000495522	WFDC11	Q8NEX6	87 aa		11.24	□□□□□ -0.61
CALD1-222	ENST00000495522	TSSC4	Q9Y5U2	329 aa	Predicted RBP	11.24	□□□□□ -0.61
CALD1-222	ENST00000495522	DNAJC9-AS1	A6NH13	148 aa		11.23	□□□□□ -0.61
CALD1-222	ENST00000495522		M0R2P5	195 aa		11.23	□□□□□ -0.61
CALD1-222	ENST00000495522	ZNF415	Q09FC8	603 aa		11.23	□□□□□ -0.61
CALD1-222	ENST00000495522	MRPL16	Q9NX20	251 aa	Known RBP	11.23	□□□□□ -0.61
CALD1-222	ENST00000495522		P0DMU3	169 aa		11.23	□□□□□ -0.61
CALD1-222	ENST00000495522	FAM231A	P0DMU4	169 aa		11.23	□□□□□ -0.61
CALD1-222	ENST00000495522	FAM231C	P0DMU5	169 aa		11.23	□□□□□ -0.61
CALD1-222	ENST00000495522	C12orf74	Q32Q52	190 aa		11.23	□□□□□ -0.61
CALD1-222	ENST00000495522	PIK3CD-AS1	Q5SR53	167 aa		11.23	□□□□□ -0.61
CALD1-222	ENST00000495522	C20orf203	Q8NBC4	194 aa		11.23	□□□□□ -0.61
CALD1-222	ENST00000495522	RAX2	Q96IS3	184 aa		11.23	□□□□□ -0.61
CALD1-222	ENST00000495522		A8MWV9	139 aa		11.22	□□□□□ -0.61
CALD1-222	ENST00000495522	RPL24	P83731	157 aa	Known RBP	11.22	□□□□□ -0.61
CALD1-222	ENST00000495522	SCGB1D4	Q6XE38	83 aa		11.22	□□□□□ -0.61
CALD1-222	ENST00000495522	ZNRF2	Q8NHG8	242 aa		11.21	□□□□□ -0.61
CALD1-222	ENST00000495522	PTH2	Q96A98	100 aa		11.21	□□□□□ -0.61
CALD1-222	ENST00000495522	MYO9A	B2RTY4	2548 aa		11.21	□□□□□ -0.61
CALD1-222	ENST00000495522	NBPF19	A0A087WUL8	3843 aa		11.21	□□□□□ -0.61
CALD1-222	ENST00000495522	IGHV3-73	A0A0B4J1V6	119 aa		11.21	□□□□□ -0.62
CALD1-222	ENST00000495522	TMEM170B	Q5T4T1	132 aa		11.21	□□□□□ -0.62
CALD1-222	ENST00000495522	HIST2H2BD	Q6DRA6	164 aa		11.21	□□□□□ -0.62
CALD1-222	ENST00000495522	LINC00467	Q9BRT7	94 aa		11.21	□□□□□ -0.62
CALD1-222	ENST00000495522	IGLL5	B9A064	214 aa		11.2	□□□□□ -0.62
CALD1-222	ENST00000495522	INS	P01308	110 aa		11.2	□□□□□ -0.62
CALD1-222	ENST00000495522	PRM2	P04554	102 aa		11.2	□□□□□ -0.62
CALD1-222	ENST00000495522	NFE4	Q86UQ8	179 aa		11.2	□□□□□ -0.62
CALD1-222	ENST00000495522	LINC01587	Q99440	93 aa		11.2	□□□□□ -0.62
CALD1-222	ENST00000495522	AKAP9	Q99996	3911 aa		11.2	□□□□□ -0.62
CALD1-222	ENST00000495522	ITPR3	Q14573	2671 aa		11.2	□□□□□ -0.62
CALD1-222	ENST00000495522		A0A1B0GWB2	263 aa		11.2	□□□□□ -0.62
CALD1-222	ENST00000495522	PLEKHB2	Q96CS7	222 aa		11.2	□□□□□ -0.62
CALD1-222	ENST00000495522	OPRPN	Q99935	248 aa	Predicted RBP	11.2	□□□□□ -0.62
CALD1-222	ENST00000495522	FAM110A	Q9BQ89	295 aa		11.2	□□□□□ -0.62
CALD1-222	ENST00000495522	ZNF469	Q96JG9	3925 aa	Predicted RBP	11.2	□□□□□ -0.62
CALD1-222	ENST00000495522	TRAV25	A0A0B4J276	109 aa		11.19	□□□□□ -0.62
CALD1-222	ENST00000495522	ZNF418	Q8TF45	676 aa	Predicted RBP	11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms