RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 Q6ZVH6 145 aa15.4■□□□□ 0.06
CCDC88B-208ENST00000492980 WNK1Q9H4A3 2382 aa15.39■□□□□ 0.05
CCDC88B-208ENST00000492980 ADARB2-AS1A8MUL3 147 aa15.39■□□□□ 0.05
CCDC88B-208ENST00000492980 OR11H12B2RN74 326 aa15.39■□□□□ 0.05
CCDC88B-208ENST00000492980 PROK1P58294 105 aa15.39■□□□□ 0.05
CCDC88B-208ENST00000492980 STHQ8IWL8 128 aa15.39■□□□□ 0.05
CCDC88B-208ENST00000492980 C11orf72Q8NBR9 251 aa15.39■□□□□ 0.05
CCDC88B-208ENST00000492980 LINC01549A6NIU2 74 aa15.38■□□□□ 0.05
CCDC88B-208ENST00000492980 TMEM97Q5BJF2 176 aa15.38■□□□□ 0.05
CCDC88B-208ENST00000492980 PIK3CD-AS1Q5SR53 167 aa15.38■□□□□ 0.05
CCDC88B-208ENST00000492980 PTH2Q96A98 100 aa15.38■□□□□ 0.05
CCDC88B-208ENST00000492980 IGIPA6NJ69 53 aa15.38■□□□□ 0.05
CCDC88B-208ENST00000492980 TSHBP01222 138 aa15.38■□□□□ 0.05
CCDC88B-208ENST00000492980 GAGE1Q13065 139 aa15.38■□□□□ 0.05
CCDC88B-208ENST00000492980 EDA2RQ9HAV5 297 aa15.38■□□□□ 0.05
CCDC88B-208ENST00000492980 COX11Q9Y6N1 276 aa15.38■□□□□ 0.05
CCDC88B-208ENST00000492980 LY6G6DO95868 133 aa15.37■□□□□ 0.05
CCDC88B-208ENST00000492980 RPL39P62891 51 aaKnown RBP15.37■□□□□ 0.05
CCDC88B-208ENST00000492980 UFSP1Q6NVU6 142 aa15.37■□□□□ 0.05
CCDC88B-208ENST00000492980 TTTY13Q9BZ97 58 aa15.37■□□□□ 0.05
CCDC88B-208ENST00000492980 PRSS29PA6NIE9 313 aa15.37■□□□□ 0.05
CCDC88B-208ENST00000492980 A8MWV9 139 aa15.37■□□□□ 0.05
CCDC88B-208ENST00000492980 XCL2Q9UBD3 114 aa15.37■□□□□ 0.05
CCDC88B-208ENST00000492980 SAP30O75446 220 aa15.36■□□□□ 0.05
CCDC88B-208ENST00000492980 ORAOV1Q8WV07 137 aa15.36■□□□□ 0.05
CCDC88B-208ENST00000492980 IGHV3-73A0A0B4J1V6 119 aa15.35■□□□□ 0.05
CCDC88B-208ENST00000492980 HSD52Q0P140 79 aa15.35■□□□□ 0.05
CCDC88B-208ENST00000492980 RHOHQ15669 191 aa15.35■□□□□ 0.05
CCDC88B-208ENST00000492980 NSUN5P1Q3KNT7 163 aa15.35■□□□□ 0.05
CCDC88B-208ENST00000492980 TAX1BP3O14907 124 aa15.34■□□□□ 0.05
CCDC88B-208ENST00000492980 TMEM141Q96I45 108 aa15.34■□□□□ 0.05
CCDC88B-208ENST00000492980 TIMM17AQ99595 171 aa15.34■□□□□ 0.05
CCDC88B-208ENST00000492980 NACAE9PAV3 2078 aa15.34■□□□□ 0.05
CCDC88B-208ENST00000492980 SPXQ9BT56 116 aa15.34■□□□□ 0.05
CCDC88B-208ENST00000492980 I3L3M4 83 aa15.33■□□□□ 0.04
CCDC88B-208ENST00000492980 IGLV1-51P01701 117 aa15.33■□□□□ 0.04
CCDC88B-208ENST00000492980 C1orf158Q8N1D5 194 aa15.33■□□□□ 0.04
CCDC88B-208ENST00000492980 SETD2Q9BYW2 2564 aaPredicted RBP15.33■□□□□ 0.04
CCDC88B-208ENST00000492980 HECTD1Q9ULT8 2610 aa15.33■□□□□ 0.04
CCDC88B-208ENST00000492980 NPSP0C0P6 89 aa15.32■□□□□ 0.04
CCDC88B-208ENST00000492980 CFAP126Q5VTH2 177 aa15.32■□□□□ 0.04
CCDC88B-208ENST00000492980 HIGD1BQ9P298 99 aa15.32■□□□□ 0.04
CCDC88B-208ENST00000492980 P0DMU3 169 aa15.32■□□□□ 0.04
CCDC88B-208ENST00000492980 FAM231AP0DMU4 169 aa15.32■□□□□ 0.04
CCDC88B-208ENST00000492980 FAM231CP0DMU5 169 aa15.32■□□□□ 0.04
CCDC88B-208ENST00000492980 AZU1P20160 251 aa15.32■□□□□ 0.04
CCDC88B-208ENST00000492980 SEC11AP67812 179 aa15.32■□□□□ 0.04
CCDC88B-208ENST00000492980 BEAN1Q3B7T3 259 aa15.32■□□□□ 0.04
CCDC88B-208ENST00000492980 MRPL16Q9NX20 251 aaKnown RBP15.32■□□□□ 0.04
CCDC88B-208ENST00000492980 HIVEP2P31629 2446 aa15.32■□□□□ 0.04
CCDC88B-208ENST00000492980 CMC4P56277 68 aaPredicted RBP15.31■□□□□ 0.04
CCDC88B-208ENST00000492980 PMVKQ15126 192 aa15.31■□□□□ 0.04
CCDC88B-208ENST00000492980 MAPKAPK5-AS1Q8N8E1 139 aa15.31■□□□□ 0.04
CCDC88B-208ENST00000492980 KRTAP10-3P60369 221 aa15.3■□□□□ 0.04
CCDC88B-208ENST00000492980 IGLV4-69A0A075B6H9 119 aa15.29■□□□□ 0.04
CCDC88B-208ENST00000492980 TRBV25-1A0A075B6N4 114 aa15.29■□□□□ 0.04
CCDC88B-208ENST00000492980 Q6ZSN1 163 aa15.29■□□□□ 0.04
CCDC88B-208ENST00000492980 CST9LQ9H4G1 147 aa15.29■□□□□ 0.04
CCDC88B-208ENST00000492980 TRAV8-6A0A0B4J262 113 aa15.29■□□□□ 0.04
CCDC88B-208ENST00000492980 IGHV3OR16-12A0A075B7B8 117 aa15.28■□□□□ 0.04
CCDC88B-208ENST00000492980 RHODO00212 210 aa15.28■□□□□ 0.04
CCDC88B-208ENST00000492980 C20orf203Q8NBC4 194 aa15.28■□□□□ 0.04
CCDC88B-208ENST00000492980 IL17DQ8TAD2 202 aa15.28■□□□□ 0.04
CCDC88B-208ENST00000492980 CHAC1Q9BUX1 264 aa15.28■□□□□ 0.04
CCDC88B-208ENST00000492980 RS1O15537 224 aa15.28■□□□□ 0.04
CCDC88B-208ENST00000492980 FAM110AQ9BQ89 295 aa15.28■□□□□ 0.04
CCDC88B-208ENST00000492980 WFDC10AQ9H1F0 79 aa15.27■□□□□ 0.04
CCDC88B-208ENST00000492980 C19orf73Q9NVV2 129 aa15.27■□□□□ 0.04
CCDC88B-208ENST00000492980 Q9UF83 564 aa15.26■□□□□ 0.03
CCDC88B-208ENST00000492980 TNFRSF18Q9Y5U5 241 aa15.26■□□□□ 0.03
CCDC88B-208ENST00000492980 SETXQ7Z333 2677 aaKnown RBP15.26■□□□□ 0.03
CCDC88B-208ENST00000492980 C11orf86A6NJI1 115 aa15.26■□□□□ 0.03
CCDC88B-208ENST00000492980 E9PLD3 99 aa15.26■□□□□ 0.03
CCDC88B-208ENST00000492980 NDUFA11Q86Y39 141 aa15.26■□□□□ 0.03
CCDC88B-208ENST00000492980 OR11H2Q8NH07 326 aa15.26■□□□□ 0.03
CCDC88B-208ENST00000492980 GIG44P09565 113 aaPredicted RBP15.25■□□□□ 0.03
CCDC88B-208ENST00000492980 RNASE8Q8TDE3 154 aaKnown RBP15.25■□□□□ 0.03
CCDC88B-208ENST00000492980 A6NDN8 102 aa15.25■□□□□ 0.03
CCDC88B-208ENST00000492980 IGHV3-53P01767 116 aa15.25■□□□□ 0.03
CCDC88B-208ENST00000492980 EMP1P54849 157 aa15.25■□□□□ 0.03
CCDC88B-208ENST00000492980 PAPPA-AS1Q5QFB9 102 aa15.25■□□□□ 0.03
CCDC88B-208ENST00000492980 OTOGQ6ZRI0 2925 aa15.24■□□□□ 0.03
CCDC88B-208ENST00000492980 INAFM1C9JVW0 142 aa15.23■□□□□ 0.03
CCDC88B-208ENST00000492980 OPRPNQ99935 248 aaPredicted RBP15.23■□□□□ 0.03
CCDC88B-208ENST00000492980 PRADC1Q9BSG0 188 aa15.23■□□□□ 0.03
CCDC88B-208ENST00000492980 NIPBLQ6KC79 2804 aaeCLIP15.22■□□□□ 0.03
CCDC88B-208ENST00000492980 TMEM263Q8WUH6 116 aaKnown RBP15.22■□□□□ 0.03
CCDC88B-208ENST00000492980 MYMXA0A1B0GTQ4 84 aa15.21■□□□□ 0.03
CCDC88B-208ENST00000492980 UBE2V1Q13404 147 aa15.21■□□□□ 0.03
CCDC88B-208ENST00000492980 ZNRF2Q8NHG8 242 aa15.21■□□□□ 0.03
CCDC88B-208ENST00000492980 DNAJC30Q96LL9 226 aa15.21■□□□□ 0.03
CCDC88B-208ENST00000492980 TRGV1A0A0A0MS02 117 aa15.2■□□□□ 0.02
CCDC88B-208ENST00000492980 RPL35AP18077 110 aaKnown RBP15.2■□□□□ 0.02
CCDC88B-208ENST00000492980 GCSHP23434 173 aa15.2■□□□□ 0.02
CCDC88B-208ENST00000492980 IGLV4-3A0A075B6K6 122 aa15.2■□□□□ 0.02
CCDC88B-208ENST00000492980 H3BRM9 83 aa15.2■□□□□ 0.02
CCDC88B-208ENST00000492980 CCL25O15444 150 aa15.2■□□□□ 0.02
CCDC88B-208ENST00000492980 VAMP3Q15836 100 aa15.2■□□□□ 0.02
CCDC88B-208ENST00000492980 PF4P02776 101 aa15.19■□□□□ 0.02
CCDC88B-208ENST00000492980 FXYD2P54710 66 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms