RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 PRB4P10163 310 aaPredicted RBP4.98□□□□□ -1.61
SYNE1-229ENST00000490866 ESDP10768 282 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 HIST1H2BOP23527 126 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 SRIP30626 198 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 HIST1H2BBP33778 126 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 HIST1H2BDP58876 126 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 DAD1P61803 113 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 SUMO2P61956 95 aaKnown RBP4.98□□□□□ -1.61
SYNE1-229ENST00000490866 HIST1H2BCP62807 126 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 RPL36AP83881 106 aaKnown RBP4.98□□□□□ -1.61
SYNE1-229ENST00000490866 RHOHQ15669 191 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 ZNF56Q15929 161 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 HIST2H2BEQ16778 126 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 ORMDL2Q53FV1 153 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.98□□□□□ -1.61
SYNE1-229ENST00000490866 LCE4AQ5TA78 99 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 Q6ZQT7 251 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 Q8NAQ8 132 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 MRAPQ8TCY5 172 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 HIST1H2BHQ93079 126 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 RPL36ALQ969Q0 106 aaKnown RBP4.98□□□□□ -1.61
SYNE1-229ENST00000490866 HIST1H2BNQ99877 126 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 HIST1H2BMQ99879 126 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 HHLA3Q9XRX5 114 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 MUC4Q99102 2169 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 NBEAL2Q6ZNJ1 2754 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 TRBV7-3A0A075B6L6 115 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 IGHV4-28A0A0C4DH34 117 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 TRBV27A0A0K0K1C4 114 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 PLAC8L1A1L4L8 177 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 I3L3M4 83 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 M0QY20 66 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 HSBP1O75506 76 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 MGPP08493 103 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 NPSP0C0P6 89 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 S100A2P29034 98 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 LINC00315P59091 139 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 SSTP61278 116 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 PKIAP61925 76 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 PAPPA-AS1Q5QFB9 102 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 FAM74A4Q5TZK3 123 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 FAM222AQ5U5X8 452 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 UFSP1Q6NVU6 142 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 Q6ZTI0 123 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 FA2HQ7L5A8 372 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 Q8N8P6 123 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 C11orf45Q8TAV5 145 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 RNF185Q96GF1 192 aa4.97□□□□□ -1.61
SYNE1-229ENST00000490866 TRAV26-1A0A087WT03 109 aa4.96□□□□□ -1.62
SYNE1-229ENST00000490866 MUC21A0A0G2JKD1 596 aa4.96□□□□□ -1.62
SYNE1-229ENST00000490866 MUC21A0A140T8X8 626 aa4.96□□□□□ -1.62
SYNE1-229ENST00000490866 GAGE12BA1L429 117 aa4.96□□□□□ -1.62
SYNE1-229ENST00000490866 LINC01546A6NGU7 62 aa4.96□□□□□ -1.62
SYNE1-229ENST00000490866 H7C423 109 aa4.96□□□□□ -1.62
SYNE1-229ENST00000490866 GAGE7O76087 117 aa4.96□□□□□ -1.62
SYNE1-229ENST00000490866 GAGE12FP0CL80 117 aa4.96□□□□□ -1.62
SYNE1-229ENST00000490866 GAGE12GP0CL81 117 aa4.96□□□□□ -1.62
SYNE1-229ENST00000490866 GAGE12IP0CL82 117 aa4.96□□□□□ -1.62
SYNE1-229ENST00000490866 DEFB130BP0DP73 79 aa4.96□□□□□ -1.62
SYNE1-229ENST00000490866 DEFB130AP0DP74 79 aa4.96□□□□□ -1.62
SYNE1-229ENST00000490866 EMP1P54849 157 aa4.96□□□□□ -1.62
SYNE1-229ENST00000490866 NDUFA6P56556 154 aa4.96□□□□□ -1.62
SYNE1-229ENST00000490866 TCTAP57738 103 aa4.96□□□□□ -1.62
SYNE1-229ENST00000490866 LAGE3Q14657 143 aa4.96□□□□□ -1.62
SYNE1-229ENST00000490866 NIT1Q86X76 327 aa4.96□□□□□ -1.62
SYNE1-229ENST00000490866 SBSPONQ8IVN8 264 aa4.96□□□□□ -1.62
SYNE1-229ENST00000490866 C18orf32Q8TCD1 76 aa4.96□□□□□ -1.62
SYNE1-229ENST00000490866 GTSF1LQ9H1H1 148 aa4.96□□□□□ -1.62
SYNE1-229ENST00000490866 MRPL16Q9NX20 251 aaKnown RBP4.96□□□□□ -1.62
SYNE1-229ENST00000490866 A0A087WWL8 130 aa4.95□□□□□ -1.62
SYNE1-229ENST00000490866 C5orf52A6NGY3 159 aa4.95□□□□□ -1.62
SYNE1-229ENST00000490866 K7EQD1 137 aa4.95□□□□□ -1.62
SYNE1-229ENST00000490866 POLR2KP53803 58 aaKnown RBP4.95□□□□□ -1.62
SYNE1-229ENST00000490866 MRPL23Q16540 153 aaKnown RBP4.95□□□□□ -1.62
SYNE1-229ENST00000490866 KIAA1644Q3SXP7 199 aa4.95□□□□□ -1.62
SYNE1-229ENST00000490866 SUMO4Q6EEV6 95 aa4.95□□□□□ -1.62
SYNE1-229ENST00000490866 HSPB8Q9UJY1 196 aa4.95□□□□□ -1.62
SYNE1-229ENST00000490866 KRTAP9-7A8MTY7 169 aa4.94□□□□□ -1.62
SYNE1-229ENST00000490866 PLA2G1BP04054 148 aaKnown RBP4.94□□□□□ -1.62
SYNE1-229ENST00000490866 GATA1P15976 413 aaPredicted RBP4.94□□□□□ -1.62
SYNE1-229ENST00000490866 FCER1GP30273 86 aa4.94□□□□□ -1.62
SYNE1-229ENST00000490866 CRYBA4P53673 196 aa4.94□□□□□ -1.62
SYNE1-229ENST00000490866 FHL2Q14192 279 aa4.94□□□□□ -1.62
SYNE1-229ENST00000490866 SLC25A29Q8N8R3 303 aa4.94□□□□□ -1.62
SYNE1-229ENST00000490866 NRACQ8N912 160 aa4.94□□□□□ -1.62
SYNE1-229ENST00000490866 SMIM2Q9BVW6 85 aa4.94□□□□□ -1.62
SYNE1-229ENST00000490866 SAMD10Q9BYL1 202 aa4.94□□□□□ -1.62
SYNE1-229ENST00000490866 TRAV10A0A0B4J240 114 aa4.93□□□□□ -1.62
SYNE1-229ENST00000490866 SDHAF1A6NFY7 115 aa4.93□□□□□ -1.62
SYNE1-229ENST00000490866 ATP5LO75964 103 aa4.93□□□□□ -1.62
SYNE1-229ENST00000490866 BTF3P20290 206 aaKnown RBP4.93□□□□□ -1.62
SYNE1-229ENST00000490866 TIRAPP58753 221 aa4.93□□□□□ -1.62
SYNE1-229ENST00000490866 SNRPEP62304 92 aaKnown RBP4.93□□□□□ -1.62
SYNE1-229ENST00000490866 COTL1Q14019 142 aa4.93□□□□□ -1.62
SYNE1-229ENST00000490866 C15orf53Q8NAA6 179 aa4.93□□□□□ -1.62
SYNE1-229ENST00000490866 ZNF479Q96JC4 524 aa4.93□□□□□ -1.62
SYNE1-229ENST00000490866 TMEM70Q9BUB7 260 aa4.93□□□□□ -1.62
SYNE1-229ENST00000490866 K7EP13 123 aa4.92□□□□□ -1.62
SYNE1-229ENST00000490866 LEPROTL1O95214 131 aa4.92□□□□□ -1.62
SYNE1-229ENST00000490866 NUDT3O95989 172 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms