RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 TRBV7-3A0A075B6L6 115 aa9.38□□□□□ -0.91
SHROOM3-208ENST00000486758 TRAV8-3A0A0A6YYJ7 113 aa9.38□□□□□ -0.91
SHROOM3-208ENST00000486758 GATD1Q8NB37 220 aa9.38□□□□□ -0.91
SHROOM3-208ENST00000486758 LY6G5BQ8NDX9 201 aa9.38□□□□□ -0.91
SHROOM3-208ENST00000486758 YAE1D1Q9NRH1 226 aa9.38□□□□□ -0.91
SHROOM3-208ENST00000486758 OOSP1A8MZH6 123 aa9.38□□□□□ -0.91
SHROOM3-208ENST00000486758 CFAP126Q5VTH2 177 aa9.38□□□□□ -0.91
SHROOM3-208ENST00000486758 NRACQ8N912 160 aa9.38□□□□□ -0.91
SHROOM3-208ENST00000486758 CCDC140Q96MF4 163 aa9.38□□□□□ -0.91
SHROOM3-208ENST00000486758 DUX3Q96PT4 197 aa9.38□□□□□ -0.91
SHROOM3-208ENST00000486758 KLK9Q9UKQ9 250 aa9.38□□□□□ -0.91
SHROOM3-208ENST00000486758 IGHV4-30-2A0A087WSY4 118 aa9.38□□□□□ -0.91
SHROOM3-208ENST00000486758 GAGE5Q13069 117 aa9.38□□□□□ -0.91
SHROOM3-208ENST00000486758 GAGE6Q13070 117 aa9.38□□□□□ -0.91
SHROOM3-208ENST00000486758 PMVKQ15126 192 aa9.38□□□□□ -0.91
SHROOM3-208ENST00000486758 ZNF876PQ49A33 203 aa9.38□□□□□ -0.91
SHROOM3-208ENST00000486758 NDUFA11Q86Y39 141 aa9.38□□□□□ -0.91
SHROOM3-208ENST00000486758 KMT2BQ9UMN6 2715 aaPredicted RBP9.38□□□□□ -0.91
SHROOM3-208ENST00000486758 IGHV1-69DA0A0B4J2H0 117 aa9.37□□□□□ -0.91
SHROOM3-208ENST00000486758 IGHV1-69P01742 117 aa9.37□□□□□ -0.91
SHROOM3-208ENST00000486758 RASL10AQ92737 203 aa9.37□□□□□ -0.91
SHROOM3-208ENST00000486758 TRBV7-1A0A0A6YYK4 115 aa9.37□□□□□ -0.91
SHROOM3-208ENST00000486758 KNCNA6PVL3 124 aa9.37□□□□□ -0.91
SHROOM3-208ENST00000486758 BRI3O95415 125 aa9.37□□□□□ -0.91
SHROOM3-208ENST00000486758 SYNJ2BPP57105 145 aa9.37□□□□□ -0.91
SHROOM3-208ENST00000486758 PRR9Q5T870 116 aa9.37□□□□□ -0.91
SHROOM3-208ENST00000486758 C15orf53Q8NAA6 179 aa9.37□□□□□ -0.91
SHROOM3-208ENST00000486758 SIRPDQ9H106 197 aa9.37□□□□□ -0.91
SHROOM3-208ENST00000486758 ODF3BA8MYP8 253 aa9.36□□□□□ -0.91
SHROOM3-208ENST00000486758 TCTEX1D4Q5JR98 221 aa9.36□□□□□ -0.91
SHROOM3-208ENST00000486758 C10orf126Q8N4M7 172 aa9.36□□□□□ -0.91
SHROOM3-208ENST00000486758 RBAKDNA6NC62 111 aa9.36□□□□□ -0.91
SHROOM3-208ENST00000486758 CD28P10747 220 aa9.36□□□□□ -0.91
SHROOM3-208ENST00000486758 SPINK13Q1W4C9 94 aa9.36□□□□□ -0.91
SHROOM3-208ENST00000486758 NIPBLQ6KC79 2804 aaeCLIP9.36□□□□□ -0.91
SHROOM3-208ENST00000486758 PAPPA-AS1Q5QFB9 102 aa9.36□□□□□ -0.91
SHROOM3-208ENST00000486758 TEX49A0A1B0GTD5 131 aa9.35□□□□□ -0.91
SHROOM3-208ENST00000486758 RS1O15537 224 aa9.35□□□□□ -0.91
SHROOM3-208ENST00000486758 MUSTN1Q8IVN3 82 aa9.35□□□□□ -0.91
SHROOM3-208ENST00000486758 DAND5Q8N907 189 aa9.35□□□□□ -0.91
SHROOM3-208ENST00000486758 VCYO14598 125 aa9.35□□□□□ -0.91
SHROOM3-208ENST00000486758 CRIP2P52943 208 aaPredicted RBP9.35□□□□□ -0.91
SHROOM3-208ENST00000486758 LMO4P61968 165 aa9.35□□□□□ -0.91
SHROOM3-208ENST00000486758 TOMM6Q96B49 74 aa9.35□□□□□ -0.91
SHROOM3-208ENST00000486758 IGKV3OR2-268A0A0C4DH90 116 aa9.35□□□□□ -0.91
SHROOM3-208ENST00000486758 A0A0J9YXV3 536 aa9.35□□□□□ -0.91
SHROOM3-208ENST00000486758 IGHV4-59P01825 116 aa9.35□□□□□ -0.91
SHROOM3-208ENST00000486758 CFC1BP0CG36 223 aa9.35□□□□□ -0.91
SHROOM3-208ENST00000486758 CFC1P0CG37 223 aa9.35□□□□□ -0.91
SHROOM3-208ENST00000486758 DEFB136Q30KP8 78 aa9.35□□□□□ -0.91
SHROOM3-208ENST00000486758 C10orf99Q6UWK7 81 aa9.35□□□□□ -0.91
SHROOM3-208ENST00000486758 NEXN-AS1Q8NBZ9 246 aa9.35□□□□□ -0.91
SHROOM3-208ENST00000486758 ZMAT4Q9H898 229 aa9.35□□□□□ -0.91
SHROOM3-208ENST00000486758 IGHV7-4-1A0A0J9YVY3 117 aa9.34□□□□□ -0.91
SHROOM3-208ENST00000486758 C9orf139Q6ZV77 190 aa9.34□□□□□ -0.91
SHROOM3-208ENST00000486758 FAM110AQ9BQ89 295 aa9.34□□□□□ -0.91
SHROOM3-208ENST00000486758 F8W735 103 aaPredicted RBP9.34□□□□□ -0.91
SHROOM3-208ENST00000486758 IGHG4P01861 327 aa9.34□□□□□ -0.91
SHROOM3-208ENST00000486758 SMCPP49901 116 aaPredicted RBP9.34□□□□□ -0.91
SHROOM3-208ENST00000486758 ITLN2Q8WWU7 325 aaPredicted RBP9.34□□□□□ -0.91
SHROOM3-208ENST00000486758 GAGE12JA6NER3 117 aa9.34□□□□□ -0.92
SHROOM3-208ENST00000486758 GAGE7O76087 117 aa9.34□□□□□ -0.92
SHROOM3-208ENST00000486758 PPP1R17O96001 155 aa9.34□□□□□ -0.92
SHROOM3-208ENST00000486758 GAGE12FP0CL80 117 aa9.34□□□□□ -0.92
SHROOM3-208ENST00000486758 GAGE12GP0CL81 117 aa9.34□□□□□ -0.92
SHROOM3-208ENST00000486758 GAGE12IP0CL82 117 aa9.34□□□□□ -0.92
SHROOM3-208ENST00000486758 IFITM1P13164 125 aa9.34□□□□□ -0.92
SHROOM3-208ENST00000486758 GAGE4Q13068 117 aa9.34□□□□□ -0.92
SHROOM3-208ENST00000486758 ATXN8Q156A1 80 aa9.34□□□□□ -0.92
SHROOM3-208ENST00000486758 C5orf56Q8N8D9 126 aa9.34□□□□□ -0.92
SHROOM3-208ENST00000486758 TRAV4A0A0B4J268 109 aa9.33□□□□□ -0.92
SHROOM3-208ENST00000486758 RNF223E7ERA6 249 aa9.33□□□□□ -0.92
SHROOM3-208ENST00000486758 DYNLRB2Q8TF09 96 aa9.33□□□□□ -0.92
SHROOM3-208ENST00000486758 CDIP1Q9H305 208 aa9.33□□□□□ -0.92
SHROOM3-208ENST00000486758 EDN2P20800 178 aa9.33□□□□□ -0.92
SHROOM3-208ENST00000486758 SNRPD3P62318 126 aaKnown RBP9.33□□□□□ -0.92
SHROOM3-208ENST00000486758 A0A0J9YY99 117 aa9.33□□□□□ -0.92
SHROOM3-208ENST00000486758 MSMBP08118 114 aa9.33□□□□□ -0.92
SHROOM3-208ENST00000486758 RPL32P62910 135 aaKnown RBP9.33□□□□□ -0.92
SHROOM3-208ENST00000486758 FBXL19-AS1Q494R0 122 aa9.33□□□□□ -0.92
SHROOM3-208ENST00000486758 H3BMM0 161 aa9.32□□□□□ -0.92
SHROOM3-208ENST00000486758 M0R2P5 195 aa9.32□□□□□ -0.92
SHROOM3-208ENST00000486758 UBE2WQ96B02 151 aa9.32□□□□□ -0.92
SHROOM3-208ENST00000486758 TRAV12-1A0A0B4J245 112 aa9.32□□□□□ -0.92
SHROOM3-208ENST00000486758 C11orf71Q6IPW1 123 aa9.32□□□□□ -0.92
SHROOM3-208ENST00000486758 CEMP1Q6PRD7 247 aaPredicted RBP9.32□□□□□ -0.92
SHROOM3-208ENST00000486758 C20orf173Q96LM9 149 aa9.32□□□□□ -0.92
SHROOM3-208ENST00000486758 MEIG1Q5JSS6 88 aa9.32□□□□□ -0.92
SHROOM3-208ENST00000486758 SUMO4Q6EEV6 95 aa9.32□□□□□ -0.92
SHROOM3-208ENST00000486758 CARD19Q96LW7 228 aa9.32□□□□□ -0.92
SHROOM3-208ENST00000486758 CLEC2BQ92478 149 aa9.31□□□□□ -0.92
SHROOM3-208ENST00000486758 AJUBAQ96IF1 538 aa9.31□□□□□ -0.92
SHROOM3-208ENST00000486758 DAZ1Q9NQZ3 744 aaKnown RBP9.31□□□□□ -0.92
SHROOM3-208ENST00000486758 TNFRSF18Q9Y5U5 241 aa9.31□□□□□ -0.92
SHROOM3-208ENST00000486758 FBN2P35556 2912 aa9.31□□□□□ -0.92
SHROOM3-208ENST00000486758 IGLV2-18A0A075B6J9 118 aa9.31□□□□□ -0.92
SHROOM3-208ENST00000486758 IGHV3-38A0A0C4DH36 116 aa9.31□□□□□ -0.92
SHROOM3-208ENST00000486758 OVOL1O14753 267 aa9.31□□□□□ -0.92
SHROOM3-208ENST00000486758 TIMM21Q9BVV7 248 aa9.31□□□□□ -0.92
SHROOM3-208ENST00000486758 PRO0461Q9UI25 63 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms