RNA–Protein interactions for RNA: ENST00000485610.5

SMARCD3-212, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best)

Gene SMARCD3, Length 1,480 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-212ENST00000485610 TRAV26-1A0A087WT03 109 aa12.43□□□□□ -0.42
SMARCD3-212ENST00000485610 PHOX2AO14813 284 aa12.43□□□□□ -0.42
SMARCD3-212ENST00000485610 NIT2Q9NQR4 276 aa12.43□□□□□ -0.42
SMARCD3-212ENST00000485610 NPYP01303 97 aa12.42□□□□□ -0.42
SMARCD3-212ENST00000485610 SRIP30626 198 aa12.42□□□□□ -0.42
SMARCD3-212ENST00000485610 NEXN-AS1Q8NBZ9 246 aa12.42□□□□□ -0.42
SMARCD3-212ENST00000485610 PHLDA1Q8WV24 401 aaPredicted RBP12.42□□□□□ -0.42
SMARCD3-212ENST00000485610 VSIG2Q96IQ7 327 aa12.42□□□□□ -0.42
SMARCD3-212ENST00000485610 DNAJC30Q96LL9 226 aa12.42□□□□□ -0.42
SMARCD3-212ENST00000485610 ALKBH7Q9BT30 221 aaPredicted RBP12.42□□□□□ -0.42
SMARCD3-212ENST00000485610 A0A0J9YY99 117 aa12.41□□□□□ -0.42
SMARCD3-212ENST00000485610 TNFRSF6BO95407 300 aa12.41□□□□□ -0.42
SMARCD3-212ENST00000485610 RPL36AP83881 106 aaKnown RBP12.41□□□□□ -0.42
SMARCD3-212ENST00000485610 RPL36ALQ969Q0 106 aaKnown RBP12.41□□□□□ -0.42
SMARCD3-212ENST00000485610 TNFRSF18Q9Y5U5 241 aa12.41□□□□□ -0.42
SMARCD3-212ENST00000485610 TRBV6-5A0A0K0K1A5 114 aa12.4□□□□□ -0.42
SMARCD3-212ENST00000485610 LOC100131303A0A0U1RQF7 123 aa12.4□□□□□ -0.42
SMARCD3-212ENST00000485610 H3BNG1 76 aa12.4□□□□□ -0.42
SMARCD3-212ENST00000485610 GYPEP15421 78 aa12.4□□□□□ -0.42
SMARCD3-212ENST00000485610 Q9UF83 564 aa12.4□□□□□ -0.42
SMARCD3-212ENST00000485610 TRBV7-3A0A075B6L6 115 aa12.4□□□□□ -0.43
SMARCD3-212ENST00000485610 C20orf78Q9BR46 151 aa12.4□□□□□ -0.43
SMARCD3-212ENST00000485610 ST20Q9HBF5 79 aa12.4□□□□□ -0.43
SMARCD3-212ENST00000485610 GAGE12JA6NER3 117 aa12.39□□□□□ -0.43
SMARCD3-212ENST00000485610 SUMO2P61956 95 aaKnown RBP12.39□□□□□ -0.43
SMARCD3-212ENST00000485610 GAGE1Q13065 139 aa12.39□□□□□ -0.43
SMARCD3-212ENST00000485610 GAGE4Q13068 117 aa12.39□□□□□ -0.43
SMARCD3-212ENST00000485610 GAGE5Q13069 117 aa12.39□□□□□ -0.43
SMARCD3-212ENST00000485610 GAGE13Q4V321 117 aa12.39□□□□□ -0.43
SMARCD3-212ENST00000485610 ZNRF2Q8NHG8 242 aa12.39□□□□□ -0.43
SMARCD3-212ENST00000485610 MAP1LC3AQ9H492 121 aa12.39□□□□□ -0.43
SMARCD3-212ENST00000485610 C1orf196B1AJZ1 125 aa12.38□□□□□ -0.43
SMARCD3-212ENST00000485610 LINC00694P0DN24 101 aa12.38□□□□□ -0.43
SMARCD3-212ENST00000485610 ICOSQ9Y6W8 199 aa12.38□□□□□ -0.43
SMARCD3-212ENST00000485610 SDHAF1A6NFY7 115 aa12.37□□□□□ -0.43
SMARCD3-212ENST00000485610 UBE2D3P61077 147 aa12.37□□□□□ -0.43
SMARCD3-212ENST00000485610 UBE2D2P62837 147 aa12.37□□□□□ -0.43
SMARCD3-212ENST00000485610 TMEM70Q9BUB7 260 aa12.37□□□□□ -0.43
SMARCD3-212ENST00000485610 NUPR2A6NF83 97 aa12.36□□□□□ -0.43
SMARCD3-212ENST00000485610 RPL32P62910 135 aaKnown RBP12.36□□□□□ -0.43
SMARCD3-212ENST00000485610 MRPL23Q16540 153 aaKnown RBP12.36□□□□□ -0.43
SMARCD3-212ENST00000485610 C18orf32Q8TCD1 76 aa12.36□□□□□ -0.43
SMARCD3-212ENST00000485610 SMIM2Q9BVW6 85 aa12.36□□□□□ -0.43
SMARCD3-212ENST00000485610 PRSS47A8MTI9 375 aa12.35□□□□□ -0.43
SMARCD3-212ENST00000485610 POLR2KP53803 58 aaKnown RBP12.35□□□□□ -0.43
SMARCD3-212ENST00000485610 CEMP1Q6PRD7 247 aaPredicted RBP12.35□□□□□ -0.43
SMARCD3-212ENST00000485610 SH2D6Q7Z4S9 175 aa12.35□□□□□ -0.43
SMARCD3-212ENST00000485610 WWC2-AS2Q96NR7 200 aa12.35□□□□□ -0.43
SMARCD3-212ENST00000485610 HIST1H2BKO60814 126 aa12.34□□□□□ -0.43
SMARCD3-212ENST00000485610 HIST1H2BJP06899 126 aa12.34□□□□□ -0.43
SMARCD3-212ENST00000485610 PMCHP20382 165 aa12.34□□□□□ -0.43
SMARCD3-212ENST00000485610 HIST1H2BOP23527 126 aa12.34□□□□□ -0.43
SMARCD3-212ENST00000485610 HIST1H2BBP33778 126 aa12.34□□□□□ -0.43
SMARCD3-212ENST00000485610 HIST1H2BDP58876 126 aa12.34□□□□□ -0.43
SMARCD3-212ENST00000485610 HIST1H2BCP62807 126 aa12.34□□□□□ -0.43
SMARCD3-212ENST00000485610 HIST2H2BEQ16778 126 aa12.34□□□□□ -0.43
SMARCD3-212ENST00000485610 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.34□□□□□ -0.43
SMARCD3-212ENST00000485610 DAZ4Q86SG3 579 aaKnown RBP12.34□□□□□ -0.43
SMARCD3-212ENST00000485610 C15orf53Q8NAA6 179 aa12.34□□□□□ -0.43
SMARCD3-212ENST00000485610 HIST1H2BHQ93079 126 aa12.34□□□□□ -0.43
SMARCD3-212ENST00000485610 HIST1H2BNQ99877 126 aa12.34□□□□□ -0.43
SMARCD3-212ENST00000485610 HIST1H2BMQ99879 126 aa12.34□□□□□ -0.43
SMARCD3-212ENST00000485610 DAZ3Q9NR90 486 aaKnown RBP12.34□□□□□ -0.43
SMARCD3-212ENST00000485610 DNAH7Q8WXX0 4024 aa12.34□□□□□ -0.43
SMARCD3-212ENST00000485610 A0A096LPF7 62 aa12.34□□□□□ -0.43
SMARCD3-212ENST00000485610 TRBV27A0A0K0K1C4 114 aa12.34□□□□□ -0.43
SMARCD3-212ENST00000485610 LOC389332A0A1B0GUA5 103 aa12.34□□□□□ -0.43
SMARCD3-212ENST00000485610 RAB5BP61020 215 aa12.34□□□□□ -0.43
SMARCD3-212ENST00000485610 IQCJQ1A5X6 159 aa12.34□□□□□ -0.43
SMARCD3-212ENST00000485610 NXT2Q9NPJ8 142 aaKnown RBP12.34□□□□□ -0.43
SMARCD3-212ENST00000485610 IGLL5B9A064 214 aa12.33□□□□□ -0.44
SMARCD3-212ENST00000485610 VCYO14598 125 aa12.33□□□□□ -0.44
SMARCD3-212ENST00000485610 NUDT3O95989 172 aa12.33□□□□□ -0.44
SMARCD3-212ENST00000485610 ATP6V0E2Q8NHE4 81 aa12.33□□□□□ -0.44
SMARCD3-212ENST00000485610 KLK5Q9Y337 293 aaPredicted RBP12.33□□□□□ -0.44
SMARCD3-212ENST00000485610 I3L3M4 83 aa12.32□□□□□ -0.44
SMARCD3-212ENST00000485610 Q0VG73 95 aa12.32□□□□□ -0.44
SMARCD3-212ENST00000485610 NEGR1Q7Z3B1 354 aa12.32□□□□□ -0.44
SMARCD3-212ENST00000485610 Q8N8P6 123 aa12.32□□□□□ -0.44
SMARCD3-212ENST00000485610 MUC7Q8TAX7 377 aa12.32□□□□□ -0.44
SMARCD3-212ENST00000485610 IGLV2-18A0A075B6J9 118 aa12.31□□□□□ -0.44
SMARCD3-212ENST00000485610 IGHV3-38A0A0C4DH36 116 aa12.31□□□□□ -0.44
SMARCD3-212ENST00000485610 IFI27P40305 119 aaPredicted RBP12.31□□□□□ -0.44
SMARCD3-212ENST00000485610 PRSS3P2Q8NHM4 247 aa12.31□□□□□ -0.44
SMARCD3-212ENST00000485610 KIR2DL4Q99706 377 aa12.31□□□□□ -0.44
SMARCD3-212ENST00000485610 COTL1Q14019 142 aa12.3□□□□□ -0.44
SMARCD3-212ENST00000485610 TCAPO15273 167 aa12.29□□□□□ -0.44
SMARCD3-212ENST00000485610 FA2HQ7L5A8 372 aa12.29□□□□□ -0.44
SMARCD3-212ENST00000485610 BAGE3Q86Y29 109 aa12.29□□□□□ -0.44
SMARCD3-212ENST00000485610 TSHBP01222 138 aa12.28□□□□□ -0.44
SMARCD3-212ENST00000485610 TMEM97Q5BJF2 176 aa12.28□□□□□ -0.44
SMARCD3-212ENST00000485610 GTSF1LQ9H1H1 148 aa12.28□□□□□ -0.44
SMARCD3-212ENST00000485610 K7EMI3 77 aa12.27□□□□□ -0.44
SMARCD3-212ENST00000485610 FCER1GP30273 86 aa12.27□□□□□ -0.44
SMARCD3-212ENST00000485610 ZFAND6Q6FIF0 208 aa12.27□□□□□ -0.44
SMARCD3-212ENST00000485610 TCTAP57738 103 aa12.27□□□□□ -0.45
SMARCD3-212ENST00000485610 TIRAPP58753 221 aa12.27□□□□□ -0.45
SMARCD3-212ENST00000485610 RNASEKQ6P5S7 137 aaKnown RBP12.27□□□□□ -0.45
SMARCD3-212ENST00000485610 AP5S1Q9NUS5 200 aa12.27□□□□□ -0.45
SMARCD3-212ENST00000485610 LINC01546A6NGU7 62 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms