RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 LINC00528Q8N1L1 170 aa8.61□□□□□ -1.03
HDAC6-227ENST00000485102 OR2D3Q8NGH3 330 aa8.61□□□□□ -1.03
HDAC6-227ENST00000485102 SEC11CQ9BY50 192 aa8.61□□□□□ -1.03
HDAC6-227ENST00000485102 GFRA4Q9GZZ7 299 aa8.61□□□□□ -1.03
HDAC6-227ENST00000485102 TMEM218A2RU14 115 aa8.6□□□□□ -1.03
HDAC6-227ENST00000485102 A8MWV9 139 aa8.6□□□□□ -1.03
HDAC6-227ENST00000485102 F8W036 122 aa8.6□□□□□ -1.03
HDAC6-227ENST00000485102 M0R036 132 aa8.6□□□□□ -1.03
HDAC6-227ENST00000485102 IGHV3-30P01768 117 aa8.6□□□□□ -1.03
HDAC6-227ENST00000485102 IGHV3-33P01772 117 aa8.6□□□□□ -1.03
HDAC6-227ENST00000485102 MT-ND4LP03901 98 aa8.6□□□□□ -1.03
HDAC6-227ENST00000485102 IGHV3-30-3P0DP02 117 aa8.6□□□□□ -1.03
HDAC6-227ENST00000485102 IGHV3-30-5P0DP03 117 aa8.6□□□□□ -1.03
HDAC6-227ENST00000485102 RPL19P84098 196 aaKnown RBP8.6□□□□□ -1.03
HDAC6-227ENST00000485102 WFDC2Q14508 124 aa8.6□□□□□ -1.03
HDAC6-227ENST00000485102 ADIRFQ15847 76 aa8.6□□□□□ -1.03
HDAC6-227ENST00000485102 NUDT10Q8NFP7 164 aa8.6□□□□□ -1.03
HDAC6-227ENST00000485102 ATP6V0E2Q8NHE4 81 aa8.6□□□□□ -1.03
HDAC6-227ENST00000485102 NUDT11Q96G61 164 aa8.6□□□□□ -1.03
HDAC6-227ENST00000485102 SFRP2Q96HF1 295 aa8.6□□□□□ -1.03
HDAC6-227ENST00000485102 C9orf85Q96MD7 179 aa8.6□□□□□ -1.03
HDAC6-227ENST00000485102 HMCN2Q8NDA2 5059 aa8.6□□□□□ -1.03
HDAC6-227ENST00000485102 RHODO00212 210 aa8.59□□□□□ -1.03
HDAC6-227ENST00000485102 RPL23P62829 140 aaKnown RBP8.59□□□□□ -1.03
HDAC6-227ENST00000485102 SRSF3P84103 164 aaKnown RBP8.59□□□□□ -1.03
HDAC6-227ENST00000485102 OR10G8Q8NGN5 311 aa8.59□□□□□ -1.03
HDAC6-227ENST00000485102 ANAPC16Q96DE5 110 aa8.59□□□□□ -1.03
HDAC6-227ENST00000485102 COX11Q9Y6N1 276 aa8.59□□□□□ -1.03
HDAC6-227ENST00000485102 K7EN84 100 aa8.58□□□□□ -1.04
HDAC6-227ENST00000485102 SNAI2O43623 268 aa8.58□□□□□ -1.04
HDAC6-227ENST00000485102 ARMS2P0C7Q2 107 aa8.58□□□□□ -1.04
HDAC6-227ENST00000485102 SPANXN1Q5VSR9 72 aa8.58□□□□□ -1.04
HDAC6-227ENST00000485102 SMIM15Q7Z3B0 74 aa8.58□□□□□ -1.04
HDAC6-227ENST00000485102 FER1L6-AS1Q8NA97 138 aa8.58□□□□□ -1.04
HDAC6-227ENST00000485102 ISOC2Q96AB3 205 aa8.58□□□□□ -1.04
HDAC6-227ENST00000485102 SSBP4Q9BWG4 385 aaPredicted RBP8.58□□□□□ -1.04
HDAC6-227ENST00000485102 PGPEP1LA6NFU8 196 aa8.57□□□□□ -1.04
HDAC6-227ENST00000485102 C9JQL5 133 aa8.57□□□□□ -1.04
HDAC6-227ENST00000485102 H3BVH4 76 aa8.57□□□□□ -1.04
HDAC6-227ENST00000485102 OXTP01178 125 aa8.57□□□□□ -1.04
HDAC6-227ENST00000485102 TRGC1P0CF51 173 aa8.57□□□□□ -1.04
HDAC6-227ENST00000485102 SMIM17P0DL12 118 aa8.57□□□□□ -1.04
HDAC6-227ENST00000485102 LINC00694P0DN24 101 aa8.57□□□□□ -1.04
HDAC6-227ENST00000485102 RNASE3P12724 160 aaKnown RBP8.57□□□□□ -1.04
HDAC6-227ENST00000485102 FOXA3P55318 350 aaPredicted RBP8.57□□□□□ -1.04
HDAC6-227ENST00000485102 KRTAP10-4P60372 401 aaPredicted RBP8.57□□□□□ -1.04
HDAC6-227ENST00000485102 ZFP2Q6ZN57 461 aa8.57□□□□□ -1.04
HDAC6-227ENST00000485102 TSKUQ8WUA8 353 aa8.57□□□□□ -1.04
HDAC6-227ENST00000485102 RNASE7Q9H1E1 156 aaKnown RBP8.57□□□□□ -1.04
HDAC6-227ENST00000485102 C11orf21Q9P2W6 132 aa8.57□□□□□ -1.04
HDAC6-227ENST00000485102 FAT3Q8TDW7 4589 aa8.56□□□□□ -1.04
HDAC6-227ENST00000485102 A0A087WWC5 75 aa8.56□□□□□ -1.04
HDAC6-227ENST00000485102 TMSB15BA0A087X1C1 80 aa8.56□□□□□ -1.04
HDAC6-227ENST00000485102 S100A8P05109 93 aa8.56□□□□□ -1.04
HDAC6-227ENST00000485102 CTDSP1Q9GZU7 261 aa8.56□□□□□ -1.04
HDAC6-227ENST00000485102 A0A1B0GW15 77 aa8.55□□□□□ -1.04
HDAC6-227ENST00000485102 GRIFINA4D1Z8 144 aa8.55□□□□□ -1.04
HDAC6-227ENST00000485102 SCXQ7RTU7 201 aa8.55□□□□□ -1.04
HDAC6-227ENST00000485102 Q8N976 141 aa8.55□□□□□ -1.04
HDAC6-227ENST00000485102 BTF3L4Q96K17 158 aa8.55□□□□□ -1.04
HDAC6-227ENST00000485102 AP1S3Q96PC3 154 aa8.55□□□□□ -1.04
HDAC6-227ENST00000485102 CHAC1Q9BUX1 264 aa8.55□□□□□ -1.04
HDAC6-227ENST00000485102 NAT8BQ9UHF3 227 aa8.55□□□□□ -1.04
HDAC6-227ENST00000485102 IGHV3-73A0A0B4J1V6 119 aa8.54□□□□□ -1.04
HDAC6-227ENST00000485102 IGLC6P0CF74 106 aa8.54□□□□□ -1.04
HDAC6-227ENST00000485102 CTRLP40313 264 aa8.54□□□□□ -1.04
HDAC6-227ENST00000485102 RHEBQ15382 184 aa8.54□□□□□ -1.04
HDAC6-227ENST00000485102 DAZ4Q86SG3 579 aaKnown RBP8.54□□□□□ -1.04
HDAC6-227ENST00000485102 SVBPQ8N300 66 aa8.54□□□□□ -1.04
HDAC6-227ENST00000485102 Q8N3U1 123 aa8.54□□□□□ -1.04
HDAC6-227ENST00000485102 RMI2Q96E14 147 aa8.54□□□□□ -1.04
HDAC6-227ENST00000485102 IMMP2LQ96T52 175 aa8.54□□□□□ -1.04
HDAC6-227ENST00000485102 TPPP3Q9BW30 176 aa8.54□□□□□ -1.04
HDAC6-227ENST00000485102 CNFNQ9BYD5 112 aa8.54□□□□□ -1.04
HDAC6-227ENST00000485102 DAZ3Q9NR90 486 aaKnown RBP8.54□□□□□ -1.04
HDAC6-227ENST00000485102 TMEM242Q9NWH2 141 aa8.54□□□□□ -1.04
HDAC6-227ENST00000485102 CARHSP1Q9Y2V2 147 aaKnown RBP8.54□□□□□ -1.04
HDAC6-227ENST00000485102 M0R381 172 aa8.53□□□□□ -1.04
HDAC6-227ENST00000485102 LECT2O14960 151 aa8.53□□□□□ -1.04
HDAC6-227ENST00000485102 SNAPINO95295 136 aa8.53□□□□□ -1.04
HDAC6-227ENST00000485102 RIGQ13278 110 aa8.53□□□□□ -1.04
HDAC6-227ENST00000485102 C10orf91Q5T1B1 145 aa8.53□□□□□ -1.04
HDAC6-227ENST00000485102 UFSP1Q6NVU6 142 aa8.53□□□□□ -1.04
HDAC6-227ENST00000485102 KCNIP4Q6PIL6 250 aa8.53□□□□□ -1.04
HDAC6-227ENST00000485102 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.53□□□□□ -1.04
HDAC6-227ENST00000485102 BAALCQ8WXS3 180 aa8.53□□□□□ -1.04
HDAC6-227ENST00000485102 UBR4Q5T4S7 5183 aa8.53□□□□□ -1.04
HDAC6-227ENST00000485102 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.52□□□□□ -1.05
HDAC6-227ENST00000485102 A0A1B0GUT8 65 aa8.52□□□□□ -1.05
HDAC6-227ENST00000485102 H7C1H1 209 aa8.52□□□□□ -1.05
HDAC6-227ENST00000485102 V9GYV3 84 aa8.52□□□□□ -1.05
HDAC6-227ENST00000485102 TRAV9-1A0A075B6T8 112 aa8.51□□□□□ -1.05
HDAC6-227ENST00000485102 GAGE12JA6NER3 117 aa8.51□□□□□ -1.05
HDAC6-227ENST00000485102 HIGD1CA8MV81 97 aa8.51□□□□□ -1.05
HDAC6-227ENST00000485102 S100PP25815 95 aa8.51□□□□□ -1.05
HDAC6-227ENST00000485102 GAGE1Q13065 139 aa8.51□□□□□ -1.05
HDAC6-227ENST00000485102 GAGE4Q13068 117 aa8.51□□□□□ -1.05
HDAC6-227ENST00000485102 GAGE5Q13069 117 aa8.51□□□□□ -1.05
HDAC6-227ENST00000485102 GAGE13Q4V321 117 aa8.51□□□□□ -1.05
HDAC6-227ENST00000485102 DMRTA1Q5VZB9 504 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms