RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	S100A1	P23297	94 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	PTPRZ1	P23471	2315 aa	Predicted RBP	0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	CMPK1	P30085	196 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	ARPC4	P59998	168 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	MRPS10	P82664	201 aa	Known RBP	0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	CCDC153	Q494R4	210 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	MORN2	Q502X0	79 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	PSMG4	Q5JS54	123 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	LINC01545	Q5VT33	79 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	TMEM244	Q5VVB8	128 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	C12orf73	Q69YU5	71 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	SCIMP	Q6UWF3	145 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	MMGT1	Q8N4V1	131 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	TSTD1	Q8NFU3	115 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	PPP1R1C	Q8WVI7	109 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	C10orf82	Q8WW14	230 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	TMEM203	Q969S6	136 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	TCEAL4	Q96EI5	215 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	LINC01600	Q96MT4	127 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	SPEN	Q96T58	3664 aa	Known RBP	0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	AIF1L	Q9BQI0	150 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	CEP295	Q9C0D2	2601 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	FAM107B	Q9H098	131 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	TPT1P8	Q9HAU6	139 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	TNS1	Q9HBL0	1735 aa	Known RBP	0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	SAR1A	Q9NR31	198 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	RABAC1	Q9UI14	185 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	HIGD1A	Q9Y241	93 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	IER3IP1	Q9Y5U9	82 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	NCOA3	Q9Y6Q9	1424 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	HLA-DRB4	X5D2U9	266 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	SETD2	Q9BYW2	2564 aa	Predicted RBP	0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	DNAH1	Q9P2D7	4330 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	SVEP1	Q4LDE5	3571 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	CRYBG3	Q68DQ2	2970 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	ROCK2	O75116	1388 aa	Known RBP	0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	IBTK	Q9P2D0	1353 aa	Predicted RBP	0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	ZFYVE26	Q68DK2	2539 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	GOLGA4	Q13439	2230 aa	Known RBP	0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	HUWE1	Q7Z6Z7	4374 aa	Known RBP	0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	COL7A1	Q02388	2944 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	MYH13	Q9UKX3	1938 aa		0.17	□□□□□ -2.38
PTCD3-209	ENST00000472044	APC2	O95996	2303 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	LRRC9	Q6ZRR7	1453 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	PXDN	Q92626	1479 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	POLQ	O75417	2590 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	MYO18B	Q8IUG5	2567 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	HIVEP3	Q5T1R4	2406 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	FAM208B	Q5VWN6	2430 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	GVINP1	Q7Z2Y8	2422 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	CHD7	Q9P2D1	2997 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	FLG	P20930	4061 aa	Predicted RBP	0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	EIF4G3	O43432	1585 aa	Known RBP	0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	BICRA	Q9NZM4	1560 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	LAMA1	P25391	3075 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	DNAH12	Q6ZR08	3092 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	OVOS2	A0A0J9YW53	1432 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	DISP2	A7MBM2	1401 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	SPTBN2	O15020	2390 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	DAPK1	P53355	1430 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	OVOS2	Q6IE36	1432 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	PPIP5K1	Q6PFW1	1433 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	CASKIN1	Q8WXD9	1431 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	RRBP1	Q9P2E9	1410 aa	Known RBP	0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044		A0A1B0GW64	132 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	FAM25A	B3EWG3	89 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	FAM25C	B3EWG5	89 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	FAM25G	B3EWG6	89 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	TMEM262	E9PQX1	116 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044		K7EP13	123 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044		K7ERU9	68 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	NDUFC1	O43677	76 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	NDUFA2	O43678	99 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	MPC2	O95563	127 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	TNF	P01375	233 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	IFNA17	P01571	189 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	APOC1	P02654	83 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	S100A8	P05109	93 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	S100P	P25815	95 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	GUCA1A	P43080	201 aa	Predicted RBP	0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	ATP5E	P56381	51 aa	Predicted RBP	0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	SMCO1	Q147U7	214 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	HMGN3	Q15651	99 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	NCMAP	Q5T1S8	102 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044		Q5VV11	94 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	ALKAL2	Q6UX46	152 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	ATP11AUN	Q6ZP68	121 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	SNX29P2	Q8IUI4	249 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	TCTE3	Q8IZS6	198 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	ACBD7	Q8N6N7	88 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	MYOZ3	Q8TDC0	251 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	PPP3R2	Q96LZ3	170 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	DSCR8	Q96T75	97 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	PFDN5	Q99471	154 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	TCEAL7	Q9BRU2	100 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	SNRNP25	Q9BV90	132 aa	Known RBP	0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	TMEM191A	Q9H0A3	160 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	BANF2	Q9H503	90 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	BATF3	Q9NR55	127 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	RPRM	Q9NS64	109 aa		0.16	□□□□□ -2.38

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