RNA–Protein interactions for RNA: ENST00000469415.1

MCF2L-221, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 3,027 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-221ENST00000469415 TMEM61Q8N0U2 210 aa13.21□□□□□ -0.3
MCF2L-221ENST00000469415 AMTNQ6UX39 209 aa13.2□□□□□ -0.3
MCF2L-221ENST00000469415 C11orf86A6NJI1 115 aa13.2□□□□□ -0.3
MCF2L-221ENST00000469415 ZNF815PA8K554 130 aa13.19□□□□□ -0.3
MCF2L-221ENST00000469415 SIVA1O15304 175 aa13.19□□□□□ -0.3
MCF2L-221ENST00000469415 TSHBP01222 138 aa13.19□□□□□ -0.3
MCF2L-221ENST00000469415 WFDC11Q8NEX6 87 aa13.19□□□□□ -0.3
MCF2L-221ENST00000469415 PLEKHB2Q96CS7 222 aa13.19□□□□□ -0.3
MCF2L-221ENST00000469415 CEMP1Q6PRD7 247 aaPredicted RBP13.18□□□□□ -0.3
MCF2L-221ENST00000469415 CEND1Q8N111 149 aa13.18□□□□□ -0.3
MCF2L-221ENST00000469415 A0A1W2PPM0 123 aa13.18□□□□□ -0.3
MCF2L-221ENST00000469415 DEFB113Q30KQ7 82 aa13.18□□□□□ -0.3
MCF2L-221ENST00000469415 DLX4Q92988 240 aaPredicted RBP13.18□□□□□ -0.3
MCF2L-221ENST00000469415 BRI3O95415 125 aa13.18□□□□□ -0.3
MCF2L-221ENST00000469415 FABP2P12104 132 aa13.18□□□□□ -0.3
MCF2L-221ENST00000469415 SRSF9Q13242 221 aaKnown RBP eCLIP13.18□□□□□ -0.3
MCF2L-221ENST00000469415 GTF2H5Q6ZYL4 71 aa13.18□□□□□ -0.3
MCF2L-221ENST00000469415 CRYGDP07320 174 aa13.17□□□□□ -0.3
MCF2L-221ENST00000469415 DYNLRB2Q8TF09 96 aa13.17□□□□□ -0.3
MCF2L-221ENST00000469415 CR1P17927 2039 aa13.17□□□□□ -0.3
MCF2L-221ENST00000469415 VCYO14598 125 aa13.17□□□□□ -0.3
MCF2L-221ENST00000469415 AZU1P20160 251 aa13.17□□□□□ -0.3
MCF2L-221ENST00000469415 UBE2E2Q96LR5 201 aa13.17□□□□□ -0.3
MCF2L-221ENST00000469415 ELANEP08246 267 aa13.16□□□□□ -0.3
MCF2L-221ENST00000469415 MORN3Q6PF18 240 aaPredicted RBP13.16□□□□□ -0.3
MCF2L-221ENST00000469415 IGHV3-38A0A0C4DH36 116 aa13.15□□□□□ -0.3
MCF2L-221ENST00000469415 MYMXA0A1B0GTQ4 84 aa13.15□□□□□ -0.3
MCF2L-221ENST00000469415 POLR2KP53803 58 aaKnown RBP13.15□□□□□ -0.3
MCF2L-221ENST00000469415 SYT8Q8NBV8 401 aa13.15□□□□□ -0.3
MCF2L-221ENST00000469415 J3QLI3 93 aa13.15□□□□□ -0.3
MCF2L-221ENST00000469415 NBEAL2Q6ZNJ1 2754 aa13.15□□□□□ -0.3
MCF2L-221ENST00000469415 K7EP34 96 aa13.15□□□□□ -0.3
MCF2L-221ENST00000469415 XCL2Q9UBD3 114 aa13.15□□□□□ -0.3
MCF2L-221ENST00000469415 SETXQ7Z333 2677 aaKnown RBP13.14□□□□□ -0.31
MCF2L-221ENST00000469415 M0QY20 66 aa13.14□□□□□ -0.31
MCF2L-221ENST00000469415 APOMO95445 188 aa13.14□□□□□ -0.31
MCF2L-221ENST00000469415 RBMY1BA6NDE4 496 aaKnown RBP13.13□□□□□ -0.31
MCF2L-221ENST00000469415 RBMY1EA6NEQ0 496 aaKnown RBP13.13□□□□□ -0.31
MCF2L-221ENST00000469415 RBMY1DP0C7P1 496 aaKnown RBP13.13□□□□□ -0.31
MCF2L-221ENST00000469415 MED14OSP0DP75 135 aa13.13□□□□□ -0.31
MCF2L-221ENST00000469415 PHLDA1Q8WV24 401 aaPredicted RBP13.13□□□□□ -0.31
MCF2L-221ENST00000469415 LINC01587Q99440 93 aa13.13□□□□□ -0.31
MCF2L-221ENST00000469415 TRAV26-1A0A087WT03 109 aa13.13□□□□□ -0.31
MCF2L-221ENST00000469415 TRAV12-1A0A0B4J245 112 aa13.13□□□□□ -0.31
MCF2L-221ENST00000469415 C12orf74Q32Q52 190 aa13.13□□□□□ -0.31
MCF2L-221ENST00000469415 C9orf85Q96MD7 179 aa13.13□□□□□ -0.31
MCF2L-221ENST00000469415 ADARB2-AS1A8MUL3 147 aa13.12□□□□□ -0.31
MCF2L-221ENST00000469415 ZNRF2Q8NHG8 242 aa13.12□□□□□ -0.31
MCF2L-221ENST00000469415 MRPL16Q9NX20 251 aaKnown RBP13.12□□□□□ -0.31
MCF2L-221ENST00000469415 ZNF580Q9UK33 172 aa13.12□□□□□ -0.31
MCF2L-221ENST00000469415 LINC01619G3V211 115 aa13.12□□□□□ -0.31
MCF2L-221ENST00000469415 PPP1R17O96001 155 aa13.12□□□□□ -0.31
MCF2L-221ENST00000469415 FOXI2Q6ZQN5 318 aa13.12□□□□□ -0.31
MCF2L-221ENST00000469415 IGIPA6NJ69 53 aa13.11□□□□□ -0.31
MCF2L-221ENST00000469415 H3BMG7 143 aa13.11□□□□□ -0.31
MCF2L-221ENST00000469415 ZNF479Q96JC4 524 aa13.11□□□□□ -0.31
MCF2L-221ENST00000469415 HIGD1BQ9P298 99 aa13.11□□□□□ -0.31
MCF2L-221ENST00000469415 TRBV7-9A0A0J9YWB2 115 aa13.11□□□□□ -0.31
MCF2L-221ENST00000469415 G3V4G9 280 aa13.11□□□□□ -0.31
MCF2L-221ENST00000469415 PMVKQ15126 192 aa13.11□□□□□ -0.31
MCF2L-221ENST00000469415 UFSP1Q6NVU6 142 aa13.11□□□□□ -0.31
MCF2L-221ENST00000469415 AKAP9Q99996 3911 aa13.11□□□□□ -0.31
MCF2L-221ENST00000469415 IGLV4-69A0A075B6H9 119 aa13.1□□□□□ -0.31
MCF2L-221ENST00000469415 TEX48A0A1B0GUV7 120 aa13.1□□□□□ -0.31
MCF2L-221ENST00000469415 NXPH4O95158 308 aa13.1□□□□□ -0.31
MCF2L-221ENST00000469415 TSPEAR-AS2P59090 65 aa13.1□□□□□ -0.31
MCF2L-221ENST00000469415 SPAG8Q99932 426 aaPredicted RBP13.1□□□□□ -0.31
MCF2L-221ENST00000469415 Q6ZSN1 163 aa13.1□□□□□ -0.31
MCF2L-221ENST00000469415 H3BMM0 161 aa13.09□□□□□ -0.31
MCF2L-221ENST00000469415 A0A0J9YXV3 536 aa13.09□□□□□ -0.31
MCF2L-221ENST00000469415 IGLL5B9A064 214 aa13.09□□□□□ -0.31
MCF2L-221ENST00000469415 IGHV3-53P01767 116 aa13.09□□□□□ -0.31
MCF2L-221ENST00000469415 TM2D2Q9BX73 214 aa13.08□□□□□ -0.32
MCF2L-221ENST00000469415 E9PLD3 99 aa13.08□□□□□ -0.32
MCF2L-221ENST00000469415 LGALS9O00182 355 aa13.08□□□□□ -0.32
MCF2L-221ENST00000469415 LOC107984156A0A0G2JMH3 177 aa13.07□□□□□ -0.32
MCF2L-221ENST00000469415 H7C2G1 150 aa13.07□□□□□ -0.32
MCF2L-221ENST00000469415 ARL17AQ8IVW1 177 aa13.07□□□□□ -0.32
MCF2L-221ENST00000469415 Q6ZSV7 163 aa13.07□□□□□ -0.32
MCF2L-221ENST00000469415 SPXQ9BT56 116 aa13.07□□□□□ -0.32
MCF2L-221ENST00000469415 GCN1Q92616 2671 aaKnown RBP13.07□□□□□ -0.32
MCF2L-221ENST00000469415 UNC79Q9P2D8 2635 aa13.07□□□□□ -0.32
MCF2L-221ENST00000469415 TRBV27A0A0K0K1C4 114 aa13.07□□□□□ -0.32
MCF2L-221ENST00000469415 TSSC4Q9Y5U2 329 aaPredicted RBP13.07□□□□□ -0.32
MCF2L-221ENST00000469415 FSHBP01225 129 aa13.06□□□□□ -0.32
MCF2L-221ENST00000469415 CRYBA4P53673 196 aa13.06□□□□□ -0.32
MCF2L-221ENST00000469415 TRPT1Q86TN4 253 aaKnown RBP13.06□□□□□ -0.32
MCF2L-221ENST00000469415 MAP6D1Q9H9H5 199 aa13.06□□□□□ -0.32
MCF2L-221ENST00000469415 PGPEP1Q9NXJ5 209 aa13.06□□□□□ -0.32
MCF2L-221ENST00000469415 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.06□□□□□ -0.32
MCF2L-221ENST00000469415 IGKV2-29A2NJV5 120 aaPredicted RBP13.06□□□□□ -0.32
MCF2L-221ENST00000469415 LINC01549A6NIU2 74 aa13.06□□□□□ -0.32
MCF2L-221ENST00000469415 CD28P10747 220 aa13.06□□□□□ -0.32
MCF2L-221ENST00000469415 WFDC2Q14508 124 aa13.06□□□□□ -0.32
MCF2L-221ENST00000469415 TRGV11A0A075B6L2 103 aa13.05□□□□□ -0.32
MCF2L-221ENST00000469415 TRBV7-3A0A075B6L6 115 aa13.05□□□□□ -0.32
MCF2L-221ENST00000469415 TMEM238LA0A1B0GVL6 79 aa13.05□□□□□ -0.32
MCF2L-221ENST00000469415 TNFRSF18Q9Y5U5 241 aa13.05□□□□□ -0.32
MCF2L-221ENST00000469415 SH2D6Q7Z4S9 175 aa13.05□□□□□ -0.32
MCF2L-221ENST00000469415 VCX2Q9H322 139 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 126.5 ms