RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ITPR3Q14573 2671 aa6.58□□□□□ -1.36
SYNE1-217ENST00000466159 RBMY1BA6NDE4 496 aaKnown RBP6.58□□□□□ -1.36
SYNE1-217ENST00000466159 RBMY1EA6NEQ0 496 aaKnown RBP6.58□□□□□ -1.36
SYNE1-217ENST00000466159 H3BMM0 161 aa6.58□□□□□ -1.36
SYNE1-217ENST00000466159 RBMY1DP0C7P1 496 aaKnown RBP6.58□□□□□ -1.36
SYNE1-217ENST00000466159 PMVKQ15126 192 aa6.58□□□□□ -1.36
SYNE1-217ENST00000466159 CD300EQ496F6 205 aaPredicted RBP6.58□□□□□ -1.36
SYNE1-217ENST00000466159 DLX4Q92988 240 aaPredicted RBP6.58□□□□□ -1.36
SYNE1-217ENST00000466159 NF1P21359 2839 aa6.57□□□□□ -1.36
SYNE1-217ENST00000466159 TRGV11A0A075B6L2 103 aa6.57□□□□□ -1.36
SYNE1-217ENST00000466159 IGHV3-73A0A0B4J1V6 119 aa6.57□□□□□ -1.36
SYNE1-217ENST00000466159 RIPPLY3P57055 190 aa6.57□□□□□ -1.36
SYNE1-217ENST00000466159 KLHL30-AS1Q8NEE0 82 aa6.57□□□□□ -1.36
SYNE1-217ENST00000466159 OPRPNQ99935 248 aaPredicted RBP6.57□□□□□ -1.36
SYNE1-217ENST00000466159 SPCS1Q9Y6A9 102 aa6.57□□□□□ -1.36
SYNE1-217ENST00000466159 WNK1Q9H4A3 2382 aa6.57□□□□□ -1.36
SYNE1-217ENST00000466159 CHD6Q8TD26 2715 aa6.57□□□□□ -1.36
SYNE1-217ENST00000466159 SAP30O75446 220 aa6.57□□□□□ -1.36
SYNE1-217ENST00000466159 TAL2Q16559 108 aa6.57□□□□□ -1.36
SYNE1-217ENST00000466159 TRPT1Q86TN4 253 aaKnown RBP6.57□□□□□ -1.36
SYNE1-217ENST00000466159 C4orf3Q8WVX3 66 aa6.57□□□□□ -1.36
SYNE1-217ENST00000466159 TIMM17AQ99595 171 aa6.57□□□□□ -1.36
SYNE1-217ENST00000466159 TRBV7-3A0A075B6L6 115 aa6.56□□□□□ -1.36
SYNE1-217ENST00000466159 ZNF815PA8K554 130 aa6.56□□□□□ -1.36
SYNE1-217ENST00000466159 P0DMU3 169 aa6.56□□□□□ -1.36
SYNE1-217ENST00000466159 FAM231AP0DMU4 169 aa6.56□□□□□ -1.36
SYNE1-217ENST00000466159 FAM231CP0DMU5 169 aa6.56□□□□□ -1.36
SYNE1-217ENST00000466159 FABP2P12104 132 aa6.56□□□□□ -1.36
SYNE1-217ENST00000466159 PROK1P58294 105 aa6.56□□□□□ -1.36
SYNE1-217ENST00000466159 TMEM141Q96I45 108 aa6.56□□□□□ -1.36
SYNE1-217ENST00000466159 PEMTQ9UBM1 199 aa6.56□□□□□ -1.36
SYNE1-217ENST00000466159 CCDC168Q8NDH2 2452 aa6.56□□□□□ -1.36
SYNE1-217ENST00000466159 WFDC11Q8NEX6 87 aa6.56□□□□□ -1.36
SYNE1-217ENST00000466159 PLEKHB2Q96CS7 222 aa6.56□□□□□ -1.36
SYNE1-217ENST00000466159 LINC01549A6NIU2 74 aa6.55□□□□□ -1.36
SYNE1-217ENST00000466159 C12orf74Q32Q52 190 aa6.55□□□□□ -1.36
SYNE1-217ENST00000466159 HIST2H2BCQ6DN03 193 aa6.55□□□□□ -1.36
SYNE1-217ENST00000466159 Q6ZSV7 163 aa6.55□□□□□ -1.36
SYNE1-217ENST00000466159 ZNRF2Q8NHG8 242 aa6.55□□□□□ -1.36
SYNE1-217ENST00000466159 NACAE9PAV3 2078 aa6.55□□□□□ -1.36
SYNE1-217ENST00000466159 A8MTW9 85 aa6.55□□□□□ -1.36
SYNE1-217ENST00000466159 CIDEAO60543 219 aa6.55□□□□□ -1.36
SYNE1-217ENST00000466159 SCGB2A2Q13296 93 aa6.55□□□□□ -1.36
SYNE1-217ENST00000466159 C11orf44Q8N8P7 122 aa6.55□□□□□ -1.36
SYNE1-217ENST00000466159 DYNLRB2Q8TF09 96 aa6.55□□□□□ -1.36
SYNE1-217ENST00000466159 MAP6D1Q9H9H5 199 aa6.55□□□□□ -1.36
SYNE1-217ENST00000466159 I3L3M4 83 aa6.54□□□□□ -1.36
SYNE1-217ENST00000466159 DEFB114Q30KQ6 69 aa6.54□□□□□ -1.36
SYNE1-217ENST00000466159 NSUN5P1Q3KNT7 163 aa6.54□□□□□ -1.36
SYNE1-217ENST00000466159 TMEM170BQ5T4T1 132 aa6.54□□□□□ -1.36
SYNE1-217ENST00000466159 SCGB1D4Q6XE38 83 aa6.54□□□□□ -1.36
SYNE1-217ENST00000466159 Q9UF83 564 aa6.54□□□□□ -1.36
SYNE1-217ENST00000466159 FLNAP21333 2647 aaKnown RBP6.54□□□□□ -1.36
SYNE1-217ENST00000466159 IGLL5B9A064 214 aa6.54□□□□□ -1.36
SYNE1-217ENST00000466159 G3V4G9 280 aa6.54□□□□□ -1.36
SYNE1-217ENST00000466159 RHOHQ15669 191 aa6.54□□□□□ -1.36
SYNE1-217ENST00000466159 PAPPA-AS1Q5QFB9 102 aa6.54□□□□□ -1.36
SYNE1-217ENST00000466159 C20orf203Q8NBC4 194 aa6.54□□□□□ -1.36
SYNE1-217ENST00000466159 TSPEAR-AS2P59090 65 aa6.53□□□□□ -1.36
SYNE1-217ENST00000466159 OR5A1Q8NGJ0 315 aa6.53□□□□□ -1.36
SYNE1-217ENST00000466159 TRAV2A0A0B4J234 112 aa6.53□□□□□ -1.36
SYNE1-217ENST00000466159 A0A1W2PRX2 142 aa6.53□□□□□ -1.36
SYNE1-217ENST00000466159 DNAJC9-AS1A6NH13 148 aa6.53□□□□□ -1.36
SYNE1-217ENST00000466159 HERVK_113P61574 105 aa6.53□□□□□ -1.36
SYNE1-217ENST00000466159 SPAG8Q99932 426 aaPredicted RBP6.53□□□□□ -1.36
SYNE1-217ENST00000466159 TENM4Q6N022 2769 aa6.53□□□□□ -1.36
SYNE1-217ENST00000466159 M0R2P5 195 aa6.52□□□□□ -1.37
SYNE1-217ENST00000466159 Q6ZSN1 163 aa6.52□□□□□ -1.37
SYNE1-217ENST00000466159 RAX2Q96IS3 184 aa6.52□□□□□ -1.37
SYNE1-217ENST00000466159 ZNF479Q96JC4 524 aa6.52□□□□□ -1.37
SYNE1-217ENST00000466159 LINC01587Q99440 93 aa6.52□□□□□ -1.37
SYNE1-217ENST00000466159 ESM1Q9NQ30 184 aa6.52□□□□□ -1.37
SYNE1-217ENST00000466159 SETD2Q9BYW2 2564 aaPredicted RBP6.52□□□□□ -1.37
SYNE1-217ENST00000466159 SRSF9Q13242 221 aaKnown RBP eCLIP6.52□□□□□ -1.37
SYNE1-217ENST00000466159 A0A1B0GWB2 263 aa6.51□□□□□ -1.37
SYNE1-217ENST00000466159 TMEM86BQ8N661 226 aa6.51□□□□□ -1.37
SYNE1-217ENST00000466159 ACANP16112 2415 aa6.51□□□□□ -1.37
SYNE1-217ENST00000466159 IGLV4-3A0A075B6K6 122 aa6.51□□□□□ -1.37
SYNE1-217ENST00000466159 A0A0J9YY99 117 aa6.51□□□□□ -1.37
SYNE1-217ENST00000466159 A8MWV9 139 aa6.51□□□□□ -1.37
SYNE1-217ENST00000466159 CD28P10747 220 aa6.51□□□□□ -1.37
SYNE1-217ENST00000466159 ZNF415Q09FC8 603 aa6.51□□□□□ -1.37
SYNE1-217ENST00000466159 NFE4Q86UQ8 179 aa6.51□□□□□ -1.37
SYNE1-217ENST00000466159 C11orf72Q8NBR9 251 aa6.51□□□□□ -1.37
SYNE1-217ENST00000466159 XCL2Q9UBD3 114 aa6.51□□□□□ -1.37
SYNE1-217ENST00000466159 RRN3P1Q2M238 152 aa6.5□□□□□ -1.37
SYNE1-217ENST00000466159 ODF3L2Q3SX64 289 aa6.5□□□□□ -1.37
SYNE1-217ENST00000466159 CFAP126Q5VTH2 177 aa6.5□□□□□ -1.37
SYNE1-217ENST00000466159 CEMP1Q6PRD7 247 aaPredicted RBP6.5□□□□□ -1.37
SYNE1-217ENST00000466159 EDA2RQ9HAV5 297 aa6.5□□□□□ -1.37
SYNE1-217ENST00000466159 MRPL16Q9NX20 251 aaKnown RBP6.5□□□□□ -1.37
SYNE1-217ENST00000466159 TNFRSF18Q9Y5U5 241 aa6.5□□□□□ -1.37
SYNE1-217ENST00000466159 IGHV3-64A0A075B6Q5 118 aa6.5□□□□□ -1.37
SYNE1-217ENST00000466159 A0A0J9YXV3 536 aa6.5□□□□□ -1.37
SYNE1-217ENST00000466159 J3QQQ9 107 aa6.5□□□□□ -1.37
SYNE1-217ENST00000466159 FAM104AQ969W3 186 aa6.5□□□□□ -1.37
SYNE1-217ENST00000466159 AMELXQ99217 191 aa6.5□□□□□ -1.37
SYNE1-217ENST00000466159 VCX2Q9H322 139 aa6.5□□□□□ -1.37
SYNE1-217ENST00000466159 INSP01308 110 aa6.49□□□□□ -1.37
SYNE1-217ENST00000466159 AZU1P20160 251 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms