RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 CRYBA4P53673 196 aa9.4□□□□□ -0.9
PRPF39-202ENST00000424478 RASL11AQ6T310 242 aa9.4□□□□□ -0.9
PRPF39-202ENST00000424478 ZNRF2Q8NHG8 242 aa9.4□□□□□ -0.9
PRPF39-202ENST00000424478 PRELID3AQ96N28 172 aa9.4□□□□□ -0.9
PRPF39-202ENST00000424478 PAX4O43316 350 aa9.4□□□□□ -0.9
PRPF39-202ENST00000424478 NRACQ8N912 160 aa9.4□□□□□ -0.9
PRPF39-202ENST00000424478 NEXN-AS1Q8NBZ9 246 aa9.4□□□□□ -0.9
PRPF39-202ENST00000424478 K7EQD1 137 aa9.4□□□□□ -0.91
PRPF39-202ENST00000424478 PHOX2AO14813 284 aa9.4□□□□□ -0.91
PRPF39-202ENST00000424478 IGLL5B9A064 214 aa9.39□□□□□ -0.91
PRPF39-202ENST00000424478 RHODO00212 210 aa9.39□□□□□ -0.91
PRPF39-202ENST00000424478 TNFRSF6BO95407 300 aa9.39□□□□□ -0.91
PRPF39-202ENST00000424478 PIK3CD-AS1Q5SR53 167 aa9.39□□□□□ -0.91
PRPF39-202ENST00000424478 ZFP2Q6ZN57 461 aa9.39□□□□□ -0.91
PRPF39-202ENST00000424478 ORMDL3Q8N138 153 aa9.39□□□□□ -0.91
PRPF39-202ENST00000424478 NUDT3O95989 172 aa9.39□□□□□ -0.91
PRPF39-202ENST00000424478 OR10J3Q5JRS4 329 aa9.39□□□□□ -0.91
PRPF39-202ENST00000424478 ALKBH7Q9BT30 221 aaPredicted RBP9.39□□□□□ -0.91
PRPF39-202ENST00000424478 C18orf15Q96N68 181 aa9.38□□□□□ -0.91
PRPF39-202ENST00000424478 PRO0255Q9UI72 69 aa9.38□□□□□ -0.91
PRPF39-202ENST00000424478 MT-ND6P03923 174 aa9.38□□□□□ -0.91
PRPF39-202ENST00000424478 TEX48A0A1B0GUV7 120 aa9.37□□□□□ -0.91
PRPF39-202ENST00000424478 SDHAF1A6NFY7 115 aa9.36□□□□□ -0.91
PRPF39-202ENST00000424478 TCAPO15273 167 aa9.36□□□□□ -0.91
PRPF39-202ENST00000424478 HIST1H2BKO60814 126 aa9.36□□□□□ -0.91
PRPF39-202ENST00000424478 HIST1H2BJP06899 126 aa9.36□□□□□ -0.91
PRPF39-202ENST00000424478 HIST1H2BOP23527 126 aa9.36□□□□□ -0.91
PRPF39-202ENST00000424478 HIST1H2BBP33778 126 aa9.36□□□□□ -0.91
PRPF39-202ENST00000424478 IFI27P40305 119 aaPredicted RBP9.36□□□□□ -0.91
PRPF39-202ENST00000424478 HIST1H2BDP58876 126 aa9.36□□□□□ -0.91
PRPF39-202ENST00000424478 HIST1H2BCP62807 126 aa9.36□□□□□ -0.91
PRPF39-202ENST00000424478 HIST2H2BEQ16778 126 aa9.36□□□□□ -0.91
PRPF39-202ENST00000424478 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.36□□□□□ -0.91
PRPF39-202ENST00000424478 HIST1H2BHQ93079 126 aa9.36□□□□□ -0.91
PRPF39-202ENST00000424478 MRAP2Q96G30 205 aa9.36□□□□□ -0.91
PRPF39-202ENST00000424478 HIST1H2BNQ99877 126 aa9.36□□□□□ -0.91
PRPF39-202ENST00000424478 HIST1H2BMQ99879 126 aa9.36□□□□□ -0.91
PRPF39-202ENST00000424478 NIT2Q9NQR4 276 aa9.36□□□□□ -0.91
PRPF39-202ENST00000424478 TRAV10A0A0B4J240 114 aa9.36□□□□□ -0.91
PRPF39-202ENST00000424478 TRBV6-4A0A1B0GX49 114 aa9.36□□□□□ -0.91
PRPF39-202ENST00000424478 RHOHQ15669 191 aa9.36□□□□□ -0.91
PRPF39-202ENST00000424478 NDUFAF3Q9BU61 184 aa9.36□□□□□ -0.91
PRPF39-202ENST00000424478 TNFRSF18Q9Y5U5 241 aa9.36□□□□□ -0.91
PRPF39-202ENST00000424478 C18orf32Q8TCD1 76 aa9.35□□□□□ -0.91
PRPF39-202ENST00000424478 PMCHL1Q16048 86 aa9.35□□□□□ -0.91
PRPF39-202ENST00000424478 COX19Q49B96 90 aa9.34□□□□□ -0.91
PRPF39-202ENST00000424478 PRADC1Q9BSG0 188 aa9.34□□□□□ -0.91
PRPF39-202ENST00000424478 SUMO2P61956 95 aaKnown RBP9.34□□□□□ -0.91
PRPF39-202ENST00000424478 TMEM70Q9BUB7 260 aa9.34□□□□□ -0.91
PRPF39-202ENST00000424478 ST20Q9HBF5 79 aa9.34□□□□□ -0.91
PRPF39-202ENST00000424478 DYNC2H1Q8NCM8 4307 aaKnown RBP9.34□□□□□ -0.91
PRPF39-202ENST00000424478 TRBV7-3A0A075B6L6 115 aa9.34□□□□□ -0.91
PRPF39-202ENST00000424478 NUPR1O60356 82 aa9.34□□□□□ -0.91
PRPF39-202ENST00000424478 URB1-AS1Q96HZ7 61 aa9.33□□□□□ -0.92
PRPF39-202ENST00000424478 H7C1H1 209 aa9.33□□□□□ -0.92
PRPF39-202ENST00000424478 RPL36AP83881 106 aaKnown RBP9.33□□□□□ -0.92
PRPF39-202ENST00000424478 RPL36ALQ969Q0 106 aaKnown RBP9.33□□□□□ -0.92
PRPF39-202ENST00000424478 C1orf196B1AJZ1 125 aa9.32□□□□□ -0.92
PRPF39-202ENST00000424478 PPBPP02775 128 aa9.32□□□□□ -0.92
PRPF39-202ENST00000424478 UBE2D3P61077 147 aa9.32□□□□□ -0.92
PRPF39-202ENST00000424478 UBE2D2P62837 147 aa9.32□□□□□ -0.92
PRPF39-202ENST00000424478 PDZD11Q5EBL8 140 aa9.32□□□□□ -0.92
PRPF39-202ENST00000424478 RNASEKQ6P5S7 137 aaKnown RBP9.32□□□□□ -0.92
PRPF39-202ENST00000424478 NDUFA6P56556 154 aa9.31□□□□□ -0.92
PRPF39-202ENST00000424478 LINC00310P59036 64 aa9.31□□□□□ -0.92
PRPF39-202ENST00000424478 Q8N3U1 123 aa9.31□□□□□ -0.92
PRPF39-202ENST00000424478 PRSS3P2Q8NHM4 247 aa9.31□□□□□ -0.92
PRPF39-202ENST00000424478 MAP1LC3AQ9H492 121 aa9.31□□□□□ -0.92
PRPF39-202ENST00000424478 NTM-AS1Q6ZSK4 140 aa9.31□□□□□ -0.92
PRPF39-202ENST00000424478 BAGE3Q86Y29 109 aa9.31□□□□□ -0.92
PRPF39-202ENST00000424478 SMIM2Q9BVW6 85 aa9.31□□□□□ -0.92
PRPF39-202ENST00000424478 PMCHP20382 165 aa9.3□□□□□ -0.92
PRPF39-202ENST00000424478 POLR2KP53803 58 aaKnown RBP9.3□□□□□ -0.92
PRPF39-202ENST00000424478 ATP6V0E2Q8NHE4 81 aa9.3□□□□□ -0.92
PRPF39-202ENST00000424478 ICOSQ9Y6W8 199 aa9.3□□□□□ -0.92
PRPF39-202ENST00000424478 CEMP1Q6PRD7 247 aaPredicted RBP9.3□□□□□ -0.92
PRPF39-202ENST00000424478 NIT1Q86X76 327 aa9.3□□□□□ -0.92
PRPF39-202ENST00000424478 FAM19A2Q8N3H0 131 aa9.3□□□□□ -0.92
PRPF39-202ENST00000424478 IGLV2-18A0A075B6J9 118 aa9.29□□□□□ -0.92
PRPF39-202ENST00000424478 TRBV10-1A0A0K0K1A3 114 aa9.29□□□□□ -0.92
PRPF39-202ENST00000424478 SERF1AO75920 110 aa9.29□□□□□ -0.92
PRPF39-202ENST00000424478 DNAH1Q9P2D7 4330 aa9.29□□□□□ -0.92
PRPF39-202ENST00000424478 TSHBP01222 138 aa9.29□□□□□ -0.92
PRPF39-202ENST00000424478 MUC7Q8TAX7 377 aa9.29□□□□□ -0.92
PRPF39-202ENST00000424478 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.28□□□□□ -0.92
PRPF39-202ENST00000424478 IGKV2-29A2NJV5 120 aaPredicted RBP9.28□□□□□ -0.92
PRPF39-202ENST00000424478 LINC00694P0DN24 101 aa9.28□□□□□ -0.92
PRPF39-202ENST00000424478 ESRGQ1W209 222 aa9.28□□□□□ -0.92
PRPF39-202ENST00000424478 TRBV6-5A0A0K0K1A5 114 aa9.28□□□□□ -0.92
PRPF39-202ENST00000424478 CIDEAO60543 219 aa9.28□□□□□ -0.92
PRPF39-202ENST00000424478 RPL39P62891 51 aaKnown RBP9.28□□□□□ -0.92
PRPF39-202ENST00000424478 MRPL23Q16540 153 aaKnown RBP9.28□□□□□ -0.92
PRPF39-202ENST00000424478 WWC2-AS2Q96NR7 200 aa9.28□□□□□ -0.92
PRPF39-202ENST00000424478 I3L3M4 83 aa9.27□□□□□ -0.93
PRPF39-202ENST00000424478 FCER1GP30273 86 aa9.27□□□□□ -0.93
PRPF39-202ENST00000424478 RAB5BP61020 215 aa9.27□□□□□ -0.93
PRPF39-202ENST00000424478 FA2HQ7L5A8 372 aa9.27□□□□□ -0.93
PRPF39-202ENST00000424478 C20orf78Q9BR46 151 aa9.27□□□□□ -0.93
PRPF39-202ENST00000424478 TRBV27A0A0K0K1C4 114 aa9.26□□□□□ -0.93
PRPF39-202ENST00000424478 VCYO14598 125 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms