RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 LOC100131303A0A0U1RQF7 123 aa6.81□□□□□ -1.32
RIF1-202ENST00000414861 HTN3P15516 51 aa6.81□□□□□ -1.32
RIF1-202ENST00000414861 LINC00310P59036 64 aa6.81□□□□□ -1.32
RIF1-202ENST00000414861 OR10J3Q5JRS4 329 aa6.81□□□□□ -1.32
RIF1-202ENST00000414861 LOC389332A0A1B0GUA5 103 aa6.81□□□□□ -1.32
RIF1-202ENST00000414861 K7EQD1 137 aa6.81□□□□□ -1.32
RIF1-202ENST00000414861 NEXN-AS1Q8NBZ9 246 aa6.81□□□□□ -1.32
RIF1-202ENST00000414861 C11orf45Q8TAV5 145 aa6.81□□□□□ -1.32
RIF1-202ENST00000414861 ATP5G1P05496 136 aa6.8□□□□□ -1.32
RIF1-202ENST00000414861 NEGR1Q7Z3B1 354 aa6.8□□□□□ -1.32
RIF1-202ENST00000414861 URB1-AS1Q96HZ7 61 aa6.8□□□□□ -1.32
RIF1-202ENST00000414861 LAMTOR2Q9Y2Q5 125 aa6.8□□□□□ -1.32
RIF1-202ENST00000414861 IFI27P40305 119 aaPredicted RBP6.8□□□□□ -1.32
RIF1-202ENST00000414861 NDUFA6P56556 154 aa6.8□□□□□ -1.32
RIF1-202ENST00000414861 SUMO2P61956 95 aaKnown RBP6.8□□□□□ -1.32
RIF1-202ENST00000414861 Q0VG73 95 aa6.8□□□□□ -1.32
RIF1-202ENST00000414861 DEFB104AQ8WTQ1 72 aa6.8□□□□□ -1.32
RIF1-202ENST00000414861 NIT2Q9NQR4 276 aa6.8□□□□□ -1.32
RIF1-202ENST00000414861 F5H768 121 aa6.79□□□□□ -1.32
RIF1-202ENST00000414861 H7C1H1 209 aa6.79□□□□□ -1.32
RIF1-202ENST00000414861 NUPR1O60356 82 aa6.79□□□□□ -1.32
RIF1-202ENST00000414861 CIDEAO60543 219 aa6.79□□□□□ -1.32
RIF1-202ENST00000414861 NHLRC4P0CG21 123 aaPredicted RBP6.79□□□□□ -1.32
RIF1-202ENST00000414861 MAP1LC3AQ9H492 121 aa6.79□□□□□ -1.32
RIF1-202ENST00000414861 HHLA3Q9XRX5 114 aa6.79□□□□□ -1.32
RIF1-202ENST00000414861 DNAH7Q8WXX0 4024 aa6.79□□□□□ -1.32
RIF1-202ENST00000414861 IGLV2-18A0A075B6J9 118 aa6.79□□□□□ -1.32
RIF1-202ENST00000414861 TRBV6-5A0A0K0K1A5 114 aa6.79□□□□□ -1.32
RIF1-202ENST00000414861 TRBV6-4A0A1B0GX49 114 aa6.79□□□□□ -1.32
RIF1-202ENST00000414861 SDHAF1A6NFY7 115 aa6.79□□□□□ -1.32
RIF1-202ENST00000414861 SERF1AO75920 110 aa6.79□□□□□ -1.32
RIF1-202ENST00000414861 CRYBA4P53673 196 aa6.79□□□□□ -1.32
RIF1-202ENST00000414861 BAGE3Q86Y29 109 aa6.79□□□□□ -1.32
RIF1-202ENST00000414861 VSIG2Q96IQ7 327 aa6.79□□□□□ -1.32
RIF1-202ENST00000414861 TMEM70Q9BUB7 260 aa6.79□□□□□ -1.32
RIF1-202ENST00000414861 SMIM2Q9BVW6 85 aa6.79□□□□□ -1.32
RIF1-202ENST00000414861 A0A0J9YY99 117 aa6.78□□□□□ -1.32
RIF1-202ENST00000414861 TGP01266 2768 aa6.78□□□□□ -1.32
RIF1-202ENST00000414861 RHOHQ15669 191 aa6.78□□□□□ -1.32
RIF1-202ENST00000414861 C20orf78Q9BR46 151 aa6.78□□□□□ -1.32
RIF1-202ENST00000414861 ST20Q9HBF5 79 aa6.78□□□□□ -1.32
RIF1-202ENST00000414861 TRAV26-1A0A087WT03 109 aa6.78□□□□□ -1.32
RIF1-202ENST00000414861 TRBV10-1A0A0K0K1A3 114 aa6.78□□□□□ -1.32
RIF1-202ENST00000414861 GAGE12JA6NER3 117 aa6.78□□□□□ -1.32
RIF1-202ENST00000414861 PPP1R17O96001 155 aa6.78□□□□□ -1.32
RIF1-202ENST00000414861 POLR2KP53803 58 aaKnown RBP6.78□□□□□ -1.32
RIF1-202ENST00000414861 GAGE1Q13065 139 aa6.78□□□□□ -1.32
RIF1-202ENST00000414861 GAGE4Q13068 117 aa6.78□□□□□ -1.32
RIF1-202ENST00000414861 GAGE5Q13069 117 aa6.78□□□□□ -1.32
RIF1-202ENST00000414861 GAGE13Q4V321 117 aa6.78□□□□□ -1.32
RIF1-202ENST00000414861 COA6Q5JTJ3 125 aaKnown RBP6.78□□□□□ -1.32
RIF1-202ENST00000414861 RNASEKQ6P5S7 137 aaKnown RBP6.78□□□□□ -1.32
RIF1-202ENST00000414861 ZNRF2Q8NHG8 242 aa6.78□□□□□ -1.32
RIF1-202ENST00000414861 PRO0255Q9UI72 69 aa6.78□□□□□ -1.32
RIF1-202ENST00000414861 PRSS47A8MTI9 375 aa6.77□□□□□ -1.33
RIF1-202ENST00000414861 TNFRSF18Q9Y5U5 241 aa6.77□□□□□ -1.33
RIF1-202ENST00000414861 TRBV7-3A0A075B6L6 115 aa6.77□□□□□ -1.33
RIF1-202ENST00000414861 IGHV3-38A0A0C4DH36 116 aa6.77□□□□□ -1.33
RIF1-202ENST00000414861 PAX4O43316 350 aa6.77□□□□□ -1.33
RIF1-202ENST00000414861 LINC00694P0DN24 101 aa6.77□□□□□ -1.33
RIF1-202ENST00000414861 GYPEP15421 78 aa6.77□□□□□ -1.33
RIF1-202ENST00000414861 NIT1Q86X76 327 aa6.77□□□□□ -1.33
RIF1-202ENST00000414861 PRSS3P2Q8NHM4 247 aa6.77□□□□□ -1.33
RIF1-202ENST00000414861 PHLDA1Q8WV24 401 aaPredicted RBP6.77□□□□□ -1.33
RIF1-202ENST00000414861 PRADC1Q9BSG0 188 aa6.77□□□□□ -1.33
RIF1-202ENST00000414861 TRBV27A0A0K0K1C4 114 aa6.76□□□□□ -1.33
RIF1-202ENST00000414861 TCAPO15273 167 aa6.76□□□□□ -1.33
RIF1-202ENST00000414861 S100A6P06703 90 aa6.76□□□□□ -1.33
RIF1-202ENST00000414861 SNRPEP62304 92 aaKnown RBP6.76□□□□□ -1.33
RIF1-202ENST00000414861 PDZD11Q5EBL8 140 aa6.76□□□□□ -1.33
RIF1-202ENST00000414861 Q8N8P6 123 aa6.76□□□□□ -1.33
RIF1-202ENST00000414861 CSMD3Q7Z407 3707 aa6.76□□□□□ -1.33
RIF1-202ENST00000414861 DEFB131BA0A096LNP1 70 aa6.76□□□□□ -1.33
RIF1-202ENST00000414861 LINC00614P0C842 121 aa6.76□□□□□ -1.33
RIF1-202ENST00000414861 PMCHP20382 165 aa6.76□□□□□ -1.33
RIF1-202ENST00000414861 UBE2D3P61077 147 aa6.76□□□□□ -1.33
RIF1-202ENST00000414861 UBE2D2P62837 147 aa6.76□□□□□ -1.33
RIF1-202ENST00000414861 RPL32P62910 135 aaKnown RBP6.76□□□□□ -1.33
RIF1-202ENST00000414861 RPL36AP83881 106 aaKnown RBP6.76□□□□□ -1.33
RIF1-202ENST00000414861 PMCHL1Q16048 86 aa6.76□□□□□ -1.33
RIF1-202ENST00000414861 FA2HQ7L5A8 372 aa6.76□□□□□ -1.33
RIF1-202ENST00000414861 RPL36ALQ969Q0 106 aaKnown RBP6.76□□□□□ -1.33
RIF1-202ENST00000414861 DNAJC30Q96LL9 226 aa6.76□□□□□ -1.33
RIF1-202ENST00000414861 NXT2Q9NPJ8 142 aaKnown RBP6.76□□□□□ -1.33
RIF1-202ENST00000414861 C5orf52A6NGY3 159 aa6.75□□□□□ -1.33
RIF1-202ENST00000414861 AP5S1Q9NUS5 200 aa6.75□□□□□ -1.33
RIF1-202ENST00000414861 TSHBP01222 138 aa6.75□□□□□ -1.33
RIF1-202ENST00000414861 A0A096LNJ9 63 aa6.74□□□□□ -1.33
RIF1-202ENST00000414861 A0A096LPF7 62 aa6.74□□□□□ -1.33
RIF1-202ENST00000414861 LINC01546A6NGU7 62 aa6.74□□□□□ -1.33
RIF1-202ENST00000414861 VCYO14598 125 aa6.74□□□□□ -1.33
RIF1-202ENST00000414861 FAM19A2Q8N3H0 131 aa6.74□□□□□ -1.33
RIF1-202ENST00000414861 IFITM10A6NMD0 228 aa6.74□□□□□ -1.33
RIF1-202ENST00000414861 I3L3M4 83 aa6.74□□□□□ -1.33
RIF1-202ENST00000414861 ESDP10768 282 aa6.74□□□□□ -1.33
RIF1-202ENST00000414861 HIST3H2BBQ8N257 126 aa6.74□□□□□ -1.33
RIF1-202ENST00000414861 CHCHD1Q96BP2 118 aaKnown RBP6.74□□□□□ -1.33
RIF1-202ENST00000414861 STARD9Q9P2P6 4700 aa6.73□□□□□ -1.33
RIF1-202ENST00000414861 TRAV10A0A0B4J240 114 aa6.73□□□□□ -1.33
RIF1-202ENST00000414861 IGHV1-24A0A0C4DH33 117 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms