RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 PRSS47A8MTI9 375 aa4.73□□□□□ -1.65
VPS41-204ENST00000413141 H7C1H1 209 aa4.73□□□□□ -1.65
VPS41-204ENST00000413141 DEFB4AO15263 64 aa4.73□□□□□ -1.65
VPS41-204ENST00000413141 IGHV3-53P01767 116 aa4.73□□□□□ -1.65
VPS41-204ENST00000413141 IFI27P40305 119 aaPredicted RBP4.73□□□□□ -1.65
VPS41-204ENST00000413141 SUMO2P61956 95 aaKnown RBP4.73□□□□□ -1.65
VPS41-204ENST00000413141 TNP2Q05952 138 aa4.73□□□□□ -1.65
VPS41-204ENST00000413141 FAM222AQ5U5X8 452 aa4.73□□□□□ -1.65
VPS41-204ENST00000413141 Q6ZSN1 163 aa4.73□□□□□ -1.65
VPS41-204ENST00000413141 NIT1Q86X76 327 aa4.73□□□□□ -1.65
VPS41-204ENST00000413141 HIST1H2BLQ99880 126 aa4.73□□□□□ -1.65
VPS41-204ENST00000413141 C20orf78Q9BR46 151 aa4.73□□□□□ -1.65
VPS41-204ENST00000413141 SMIM2Q9BVW6 85 aa4.73□□□□□ -1.65
VPS41-204ENST00000413141 NXT2Q9NPJ8 142 aaKnown RBP4.73□□□□□ -1.65
VPS41-204ENST00000413141 DKK2Q9UBU2 259 aa4.73□□□□□ -1.65
VPS41-204ENST00000413141 IGHV1-24A0A0C4DH33 117 aa4.72□□□□□ -1.65
VPS41-204ENST00000413141 TEX48A0A1B0GUV7 120 aa4.72□□□□□ -1.65
VPS41-204ENST00000413141 LINC01546A6NGU7 62 aa4.72□□□□□ -1.65
VPS41-204ENST00000413141 CIDEAO60543 219 aa4.72□□□□□ -1.65
VPS41-204ENST00000413141 HSBP1O75506 76 aa4.72□□□□□ -1.65
VPS41-204ENST00000413141 LINC00614P0C842 121 aa4.72□□□□□ -1.65
VPS41-204ENST00000413141 DEFB130BP0DP73 79 aa4.72□□□□□ -1.65
VPS41-204ENST00000413141 DEFB130AP0DP74 79 aa4.72□□□□□ -1.65
VPS41-204ENST00000413141 PMCHP20382 165 aa4.72□□□□□ -1.65
VPS41-204ENST00000413141 S100A2P29034 98 aa4.72□□□□□ -1.65
VPS41-204ENST00000413141 RPL32P62910 135 aaKnown RBP4.72□□□□□ -1.65
VPS41-204ENST00000413141 FA2HQ7L5A8 372 aa4.72□□□□□ -1.65
VPS41-204ENST00000413141 SBSPONQ8IVN8 264 aa4.72□□□□□ -1.65
VPS41-204ENST00000413141 Q8N8P6 123 aa4.72□□□□□ -1.65
VPS41-204ENST00000413141 PRSS3P2Q8NHM4 247 aa4.72□□□□□ -1.65
VPS41-204ENST00000413141 SPATA25Q9BR10 227 aa4.72□□□□□ -1.65
VPS41-204ENST00000413141 TM2D3Q9BRN9 247 aa4.72□□□□□ -1.65
VPS41-204ENST00000413141 C11orf68Q9H3H3 251 aaKnown RBP4.72□□□□□ -1.65
VPS41-204ENST00000413141 ST20Q9HBF5 79 aa4.72□□□□□ -1.65
VPS41-204ENST00000413141 AP5S1Q9NUS5 200 aa4.72□□□□□ -1.65
VPS41-204ENST00000413141 CELA1Q9UNI1 258 aa4.72□□□□□ -1.65
VPS41-204ENST00000413141 SDHAF1A6NFY7 115 aa4.71□□□□□ -1.66
VPS41-204ENST00000413141 K7EQD1 137 aa4.71□□□□□ -1.66
VPS41-204ENST00000413141 SPART-AS1P0CW21 52 aa4.71□□□□□ -1.66
VPS41-204ENST00000413141 P0DMU3 169 aa4.71□□□□□ -1.66
VPS41-204ENST00000413141 FAM231AP0DMU4 169 aa4.71□□□□□ -1.66
VPS41-204ENST00000413141 FAM231CP0DMU5 169 aa4.71□□□□□ -1.66
VPS41-204ENST00000413141 FABP4P15090 132 aa4.71□□□□□ -1.66
VPS41-204ENST00000413141 AMTP48728 403 aa4.71□□□□□ -1.66
VPS41-204ENST00000413141 PMCHL1Q16048 86 aa4.71□□□□□ -1.66
VPS41-204ENST00000413141 DEFB121Q5J5C9 76 aa4.71□□□□□ -1.66
VPS41-204ENST00000413141 FAM19A2Q8N3H0 131 aa4.71□□□□□ -1.66
VPS41-204ENST00000413141 NEXN-AS1Q8NBZ9 246 aa4.71□□□□□ -1.66
VPS41-204ENST00000413141 TMEM18Q96B42 140 aa4.71□□□□□ -1.66
VPS41-204ENST00000413141 PACRGQ96M98 296 aaPredicted RBP4.71□□□□□ -1.66
VPS41-204ENST00000413141 TMEM70Q9BUB7 260 aa4.71□□□□□ -1.66
VPS41-204ENST00000413141 NIT2Q9NQR4 276 aa4.71□□□□□ -1.66
VPS41-204ENST00000413141 NBEAL2Q6ZNJ1 2754 aa4.7□□□□□ -1.66
VPS41-204ENST00000413141 A0A096LNJ9 63 aa4.7□□□□□ -1.66
VPS41-204ENST00000413141 TRGV4A0A0C4DH28 118 aa4.7□□□□□ -1.66
VPS41-204ENST00000413141 TRBV10-1A0A0K0K1A3 114 aa4.7□□□□□ -1.66
VPS41-204ENST00000413141 TRBV27A0A0K0K1C4 114 aa4.7□□□□□ -1.66
VPS41-204ENST00000413141 TRBV6-4A0A1B0GX49 114 aa4.7□□□□□ -1.66
VPS41-204ENST00000413141 TCAPO15273 167 aa4.7□□□□□ -1.66
VPS41-204ENST00000413141 POLR2KP53803 58 aaKnown RBP4.7□□□□□ -1.66
VPS41-204ENST00000413141 DAD1P61803 113 aa4.7□□□□□ -1.66
VPS41-204ENST00000413141 FHL2Q14192 279 aa4.7□□□□□ -1.66
VPS41-204ENST00000413141 NEGR1Q7Z3B1 354 aa4.7□□□□□ -1.66
VPS41-204ENST00000413141 SLC25A29Q8N8R3 303 aa4.7□□□□□ -1.66
VPS41-204ENST00000413141 MRAPQ8TCY5 172 aa4.7□□□□□ -1.66
VPS41-204ENST00000413141 DNAJC30Q96LL9 226 aa4.7□□□□□ -1.66
VPS41-204ENST00000413141 Q9UF83 564 aa4.7□□□□□ -1.66
VPS41-204ENST00000413141 A0A0J9YWU9 116 aa4.69□□□□□ -1.66
VPS41-204ENST00000413141 K7EMI3 77 aa4.69□□□□□ -1.66
VPS41-204ENST00000413141 VCYO14598 125 aa4.69□□□□□ -1.66
VPS41-204ENST00000413141 HBDP02042 147 aa4.69□□□□□ -1.66
VPS41-204ENST00000413141 LINC00694P0DN24 101 aa4.69□□□□□ -1.66
VPS41-204ENST00000413141 AKR1D1P51857 326 aa4.69□□□□□ -1.66
VPS41-204ENST00000413141 LAGE3Q14657 143 aa4.69□□□□□ -1.66
VPS41-204ENST00000413141 RHOHQ15669 191 aa4.69□□□□□ -1.66
VPS41-204ENST00000413141 ORMDL2Q53FV1 153 aa4.69□□□□□ -1.66
VPS41-204ENST00000413141 OR10D4PQ8NGN7 298 aa4.69□□□□□ -1.66
VPS41-204ENST00000413141 KIR2DL4Q99706 377 aa4.69□□□□□ -1.66
VPS41-204ENST00000413141 TNFRSF18Q9Y5U5 241 aa4.69□□□□□ -1.66
VPS41-204ENST00000413141 TENM3Q9P273 2699 aa4.69□□□□□ -1.66
VPS41-204ENST00000413141 TRBV7-3A0A075B6L6 115 aa4.68□□□□□ -1.66
VPS41-204ENST00000413141 LOC100131303A0A0U1RQF7 123 aa4.68□□□□□ -1.66
VPS41-204ENST00000413141 I3L3M4 83 aa4.68□□□□□ -1.66
VPS41-204ENST00000413141 TSHBP01222 138 aa4.68□□□□□ -1.66
VPS41-204ENST00000413141 ATP5G1P05496 136 aa4.68□□□□□ -1.66
VPS41-204ENST00000413141 FCER1GP30273 86 aa4.68□□□□□ -1.66
VPS41-204ENST00000413141 UBE2D3P61077 147 aa4.68□□□□□ -1.66
VPS41-204ENST00000413141 UBE2D2P62837 147 aa4.68□□□□□ -1.66
VPS41-204ENST00000413141 RPL36AP83881 106 aaKnown RBP4.68□□□□□ -1.66
VPS41-204ENST00000413141 C12orf74Q32Q52 190 aa4.68□□□□□ -1.66
VPS41-204ENST00000413141 RPL36ALQ969Q0 106 aaKnown RBP4.68□□□□□ -1.66
VPS41-204ENST00000413141 B9D2Q9BPU9 175 aa4.68□□□□□ -1.66
VPS41-204ENST00000413141 PRADC1Q9BSG0 188 aa4.68□□□□□ -1.66
VPS41-204ENST00000413141 ZMAT4Q9H898 229 aa4.68□□□□□ -1.66
VPS41-204ENST00000413141 IGHV3-38A0A0C4DH36 116 aa4.67□□□□□ -1.66
VPS41-204ENST00000413141 GAGE12JA6NER3 117 aa4.67□□□□□ -1.66
VPS41-204ENST00000413141 LEPROTL1O95214 131 aa4.67□□□□□ -1.66
VPS41-204ENST00000413141 NUDT3O95989 172 aa4.67□□□□□ -1.66
VPS41-204ENST00000413141 BTF3P20290 206 aaKnown RBP4.67□□□□□ -1.66
VPS41-204ENST00000413141 CRYBA4P53673 196 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms