RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 SCGB3A1Q96QR1 104 aa13.73□□□□□ -0.21
USP39-202ENST00000409025 ODF1Q14990 250 aa13.72□□□□□ -0.21
USP39-202ENST00000409025 ZFP2Q6ZN57 461 aa13.72□□□□□ -0.21
USP39-202ENST00000409025 Q6ZN92 141 aa13.72□□□□□ -0.21
USP39-202ENST00000409025 IL17DQ8TAD2 202 aa13.72□□□□□ -0.21
USP39-202ENST00000409025 DKK2Q9UBU2 259 aa13.72□□□□□ -0.21
USP39-202ENST00000409025 LINC01549A6NIU2 74 aa13.71□□□□□ -0.21
USP39-202ENST00000409025 RS1O15537 224 aa13.71□□□□□ -0.21
USP39-202ENST00000409025 SPATA3Q8NHX4 192 aa13.71□□□□□ -0.21
USP39-202ENST00000409025 HNRNPA3P51991 378 aaKnown RBP13.7□□□□□ -0.22
USP39-202ENST00000409025 CYSLTR1Q9Y271 337 aa13.7□□□□□ -0.22
USP39-202ENST00000409025 CTAG1AP78358 180 aa13.7□□□□□ -0.22
USP39-202ENST00000409025 CSNK1G2-AS1Q8NCQ2 148 aa13.7□□□□□ -0.22
USP39-202ENST00000409025 TRGV1A0A0A0MS02 117 aa13.69□□□□□ -0.22
USP39-202ENST00000409025 M0R143 59 aa13.69□□□□□ -0.22
USP39-202ENST00000409025 MRPL52Q86TS9 123 aaKnown RBP13.69□□□□□ -0.22
USP39-202ENST00000409025 ZMAT4Q9H898 229 aa13.69□□□□□ -0.22
USP39-202ENST00000409025 I3L3M4 83 aa13.68□□□□□ -0.22
USP39-202ENST00000409025 ERASQ7Z444 233 aa13.68□□□□□ -0.22
USP39-202ENST00000409025 C16orf74Q96GX8 76 aa13.68□□□□□ -0.22
USP39-202ENST00000409025 A0A087WX48 190 aa13.68□□□□□ -0.22
USP39-202ENST00000409025 RIPPLY3P57055 190 aa13.68□□□□□ -0.22
USP39-202ENST00000409025 RHOHQ15669 191 aa13.68□□□□□ -0.22
USP39-202ENST00000409025 DEFB104AQ8WTQ1 72 aa13.68□□□□□ -0.22
USP39-202ENST00000409025 TP53TG1Q9Y2A0 90 aa13.68□□□□□ -0.22
USP39-202ENST00000409025 TNFRSF18Q9Y5U5 241 aa13.68□□□□□ -0.22
USP39-202ENST00000409025 NACAE9PAV3 2078 aa13.67□□□□□ -0.22
USP39-202ENST00000409025 F8P00451 2351 aa13.67□□□□□ -0.22
USP39-202ENST00000409025 TRAV12-1A0A0B4J245 112 aa13.67□□□□□ -0.22
USP39-202ENST00000409025 DPM2O94777 84 aa13.67□□□□□ -0.22
USP39-202ENST00000409025 IGKCP01834 107 aa13.67□□□□□ -0.22
USP39-202ENST00000409025 IGHV3-53P01767 116 aa13.66□□□□□ -0.22
USP39-202ENST00000409025 P0DMU3 169 aa13.66□□□□□ -0.22
USP39-202ENST00000409025 FAM231AP0DMU4 169 aa13.66□□□□□ -0.22
USP39-202ENST00000409025 FAM231CP0DMU5 169 aa13.66□□□□□ -0.22
USP39-202ENST00000409025 LBHQ53QV2 105 aaPredicted RBP13.66□□□□□ -0.22
USP39-202ENST00000409025 SLC25A34Q6PIV7 304 aa13.66□□□□□ -0.22
USP39-202ENST00000409025 Q6ZSN1 163 aa13.66□□□□□ -0.22
USP39-202ENST00000409025 OR4C5Q8NGB2 326 aa13.66□□□□□ -0.22
USP39-202ENST00000409025 SNHG12Q9BXW3 62 aa13.66□□□□□ -0.22
USP39-202ENST00000409025 DAZ2Q13117 558 aaKnown RBP13.66□□□□□ -0.22
USP39-202ENST00000409025 RRN3P1Q2M238 152 aa13.66□□□□□ -0.22
USP39-202ENST00000409025 STPG4Q8N801 248 aa13.66□□□□□ -0.22
USP39-202ENST00000409025 EREGO14944 169 aa13.65□□□□□ -0.22
USP39-202ENST00000409025 TSHBP01222 138 aa13.65□□□□□ -0.22
USP39-202ENST00000409025 ANKRD39Q53RE8 183 aa13.65□□□□□ -0.22
USP39-202ENST00000409025 NEXN-AS1Q8NBZ9 246 aa13.65□□□□□ -0.22
USP39-202ENST00000409025 MRPL35Q9NZE8 188 aaKnown RBP13.65□□□□□ -0.22
USP39-202ENST00000409025 Q6ZTI0 123 aa13.64□□□□□ -0.23
USP39-202ENST00000409025 WFDC9Q8NEX5 89 aa13.64□□□□□ -0.23
USP39-202ENST00000409025 BAALCQ8WXS3 180 aa13.64□□□□□ -0.23
USP39-202ENST00000409025 DNAJC30Q96LL9 226 aa13.64□□□□□ -0.23
USP39-202ENST00000409025 NOP10Q9NPE3 64 aaKnown RBP13.64□□□□□ -0.23
USP39-202ENST00000409025 MRPS16Q9Y3D3 137 aaKnown RBP13.64□□□□□ -0.23
USP39-202ENST00000409025 COX8AP10176 69 aa13.64□□□□□ -0.23
USP39-202ENST00000409025 RPL39P62891 51 aaKnown RBP13.63□□□□□ -0.23
USP39-202ENST00000409025 TMEM141Q96I45 108 aa13.63□□□□□ -0.23
USP39-202ENST00000409025 CHTOPQ9Y3Y2 248 aaKnown RBP13.63□□□□□ -0.23
USP39-202ENST00000409025 PLAC8L1A1L4L8 177 aa13.62□□□□□ -0.23
USP39-202ENST00000409025 IGIPA6NJ69 53 aa13.62□□□□□ -0.23
USP39-202ENST00000409025 F8VRH5 84 aa13.62□□□□□ -0.23
USP39-202ENST00000409025 PLNP26678 52 aa13.62□□□□□ -0.23
USP39-202ENST00000409025 TIMM17AQ99595 171 aa13.62□□□□□ -0.23
USP39-202ENST00000409025 C2orf88Q9BSF0 95 aa13.62□□□□□ -0.23
USP39-202ENST00000409025 HHLA3Q9XRX5 114 aa13.62□□□□□ -0.23
USP39-202ENST00000409025 TRAV4A0A0B4J268 109 aa13.62□□□□□ -0.23
USP39-202ENST00000409025 JMJD1CQ15652 2540 aa13.61□□□□□ -0.23
USP39-202ENST00000409025 KRTAP24-1Q3LI83 254 aa13.6□□□□□ -0.23
USP39-202ENST00000409025 C20orf203Q8NBC4 194 aa13.6□□□□□ -0.23
USP39-202ENST00000409025 ZNF479Q96JC4 524 aa13.6□□□□□ -0.23
USP39-202ENST00000409025 OVOL2Q9BRP0 275 aa13.6□□□□□ -0.23
USP39-202ENST00000409025 TP73-AS1Q9UF72 201 aa13.6□□□□□ -0.23
USP39-202ENST00000409025 NIPBLQ6KC79 2804 aaeCLIP13.6□□□□□ -0.235e-6■■■■■ 32.2
USP39-202ENST00000409025 Q9UF83 564 aa13.6□□□□□ -0.23
USP39-202ENST00000409025 PRSS29PA6NIE9 313 aa13.59□□□□□ -0.23
USP39-202ENST00000409025 TCTAP57738 103 aa13.59□□□□□ -0.23
USP39-202ENST00000409025 MAST4O15021 2626 aa13.59□□□□□ -0.23
USP39-202ENST00000409025 ZC2HC1BQ5TFG8 222 aa13.58□□□□□ -0.23
USP39-202ENST00000409025 NMUP48645 174 aa13.58□□□□□ -0.24
USP39-202ENST00000409025 BATFQ16520 125 aa13.58□□□□□ -0.24
USP39-202ENST00000409025 TRGV2A0A075B6R0 118 aa13.57□□□□□ -0.24
USP39-202ENST00000409025 GAGE12BA1L429 117 aa13.57□□□□□ -0.24
USP39-202ENST00000409025 WIPF1O43516 503 aa13.57□□□□□ -0.24
USP39-202ENST00000409025 GAGE7O76087 117 aa13.57□□□□□ -0.24
USP39-202ENST00000409025 GAGE12FP0CL80 117 aa13.57□□□□□ -0.24
USP39-202ENST00000409025 GAGE12GP0CL81 117 aa13.57□□□□□ -0.24
USP39-202ENST00000409025 GAGE12IP0CL82 117 aa13.57□□□□□ -0.24
USP39-202ENST00000409025 PMVKQ15126 192 aa13.57□□□□□ -0.24
USP39-202ENST00000409025 CIDEAO60543 219 aa13.56□□□□□ -0.24
USP39-202ENST00000409025 FGF6P10767 208 aa13.56□□□□□ -0.24
USP39-202ENST00000409025 K7EQD1 137 aa13.56□□□□□ -0.24
USP39-202ENST00000409025 BOD1L2Q8IYS8 172 aa13.56□□□□□ -0.24
USP39-202ENST00000409025 TRBV10-1A0A0K0K1A3 114 aa13.55□□□□□ -0.24
USP39-202ENST00000409025 KIR2DL5BQ8NHK3 375 aa13.55□□□□□ -0.24
USP39-202ENST00000409025 CST9LQ9H4G1 147 aa13.55□□□□□ -0.24
USP39-202ENST00000409025 TEP1Q99973 2627 aaKnown RBP13.55□□□□□ -0.24
USP39-202ENST00000409025 SMIM9A6NGZ8 99 aa13.54□□□□□ -0.24
USP39-202ENST00000409025 DLEU1O43261 78 aa13.54□□□□□ -0.24
USP39-202ENST00000409025 APOC4P55056 127 aa13.54□□□□□ -0.24
USP39-202ENST00000409025 ZNRF2Q8NHG8 242 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms