RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 DEFB112Q30KQ8 113 aa8.29□□□□□ -1.08
CCDC40-204ENST00000397545 ODF1Q14990 250 aa8.29□□□□□ -1.08
CCDC40-204ENST00000397545 NPBQ8NG41 125 aa8.29□□□□□ -1.08
CCDC40-204ENST00000397545 RBAKDNA6NC62 111 aa8.29□□□□□ -1.08
CCDC40-204ENST00000397545 SUMO4Q6EEV6 95 aa8.29□□□□□ -1.08
CCDC40-204ENST00000397545 CLPSL2Q6UWE3 100 aa8.29□□□□□ -1.08
CCDC40-204ENST00000397545 PTH2Q96A98 100 aa8.29□□□□□ -1.08
CCDC40-204ENST00000397545 MRPL53Q96EL3 112 aaKnown RBP8.29□□□□□ -1.08
CCDC40-204ENST00000397545 WI2-2373I1.2A0A1W2PRP0 233 aa8.28□□□□□ -1.08
CCDC40-204ENST00000397545 INS-IGF2F8WCM5 200 aa8.28□□□□□ -1.08
CCDC40-204ENST00000397545 PTPRBP23467 1997 aa8.28□□□□□ -1.08
CCDC40-204ENST00000397545 LINC01619G3V211 115 aa8.28□□□□□ -1.08
CCDC40-204ENST00000397545 APRG1Q8IVJ8 170 aa8.28□□□□□ -1.08
CCDC40-204ENST00000397545 MLST8Q9BVC4 326 aa8.28□□□□□ -1.08
CCDC40-204ENST00000397545 LINC01548A6NM66 108 aa8.28□□□□□ -1.08
CCDC40-204ENST00000397545 HOXD3P31249 432 aaPredicted RBP8.28□□□□□ -1.08
CCDC40-204ENST00000397545 ZFP2Q6ZN57 461 aa8.28□□□□□ -1.08
CCDC40-204ENST00000397545 DAND5Q8N907 189 aa8.28□□□□□ -1.08
CCDC40-204ENST00000397545 C15orf53Q8NAA6 179 aa8.28□□□□□ -1.08
CCDC40-204ENST00000397545 MBD6Q96DN6 1003 aa8.28□□□□□ -1.08
CCDC40-204ENST00000397545 SMG1Q96Q15 3661 aaKnown RBP8.27□□□□□ -1.08
CCDC40-204ENST00000397545 C9orf153Q5TBE3 101 aa8.27□□□□□ -1.09
CCDC40-204ENST00000397545 UNQ9165/PRO28630Q6UXU0 137 aa8.27□□□□□ -1.09
CCDC40-204ENST00000397545 C1QTNF4Q9BXJ3 329 aa8.27□□□□□ -1.09
CCDC40-204ENST00000397545 LENEPQ9Y5L5 61 aa8.27□□□□□ -1.09
CCDC40-204ENST00000397545 B5MCH6 92 aa8.27□□□□□ -1.09
CCDC40-204ENST00000397545 TRBV12-3P01733 135 aa8.27□□□□□ -1.09
CCDC40-204ENST00000397545 Q8NA96 180 aa8.27□□□□□ -1.09
CCDC40-204ENST00000397545 Q9H8V8 135 aa8.27□□□□□ -1.09
CCDC40-204ENST00000397545 PRSS47A8MTI9 375 aa8.27□□□□□ -1.09
CCDC40-204ENST00000397545 OPRPNQ99935 248 aaPredicted RBP8.27□□□□□ -1.09
CCDC40-204ENST00000397545 TMEM243Q9BU79 118 aa8.27□□□□□ -1.09
CCDC40-204ENST00000397545 U3KQE9 123 aa8.27□□□□□ -1.09
CCDC40-204ENST00000397545 SS18Q15532 418 aa8.26□□□□□ -1.09
CCDC40-204ENST00000397545 TINCRA0A1B0GVN0 87 aa8.26□□□□□ -1.09
CCDC40-204ENST00000397545 C11orf86A6NJI1 115 aa8.26□□□□□ -1.09
CCDC40-204ENST00000397545 CTRLP40313 264 aa8.26□□□□□ -1.09
CCDC40-204ENST00000397545 MUSTN1Q8IVN3 82 aa8.26□□□□□ -1.09
CCDC40-204ENST00000397545 IGHV4-30-2A0A087WSY4 118 aa8.26□□□□□ -1.09
CCDC40-204ENST00000397545 C16orf54Q6UWD8 224 aa8.25□□□□□ -1.09
CCDC40-204ENST00000397545 Q96MF0 132 aa8.25□□□□□ -1.09
CCDC40-204ENST00000397545 Q8N1Y9 231 aa8.25□□□□□ -1.09
CCDC40-204ENST00000397545 TRAV12-1A0A0B4J245 112 aa8.25□□□□□ -1.09
CCDC40-204ENST00000397545 SLURP1P55000 103 aa8.25□□□□□ -1.09
CCDC40-204ENST00000397545 GATA3P23771 443 aa8.24□□□□□ -1.09
CCDC40-204ENST00000397545 C5orf38Q86SI9 138 aa8.24□□□□□ -1.09
CCDC40-204ENST00000397545 NOP10Q9NPE3 64 aaKnown RBP8.24□□□□□ -1.09
CCDC40-204ENST00000397545 F5H768 121 aa8.24□□□□□ -1.09
CCDC40-204ENST00000397545 IFITM1P13164 125 aa8.24□□□□□ -1.09
CCDC40-204ENST00000397545 BAALCQ8WXS3 180 aa8.24□□□□□ -1.09
CCDC40-204ENST00000397545 CMC4P56277 68 aaPredicted RBP8.24□□□□□ -1.09
CCDC40-204ENST00000397545 TET2Q6N021 2002 aaPredicted RBP8.24□□□□□ -1.09
CCDC40-204ENST00000397545 IGF1P05019 195 aa8.23□□□□□ -1.09
CCDC40-204ENST00000397545 CRIP1P50238 77 aa8.23□□□□□ -1.09
CCDC40-204ENST00000397545 C5orf56Q8N8D9 126 aa8.23□□□□□ -1.09
CCDC40-204ENST00000397545 INAFM2P0DMQ5 153 aa8.23□□□□□ -1.09
CCDC40-204ENST00000397545 CRYBA4P53673 196 aa8.23□□□□□ -1.09
CCDC40-204ENST00000397545 ADORA2A-AS1P86434 159 aa8.23□□□□□ -1.09
CCDC40-204ENST00000397545 MDFICQ9P1T7 246 aa8.23□□□□□ -1.09
CCDC40-204ENST00000397545 SOCS3O14543 225 aa8.23□□□□□ -1.09
CCDC40-204ENST00000397545 RHOHQ15669 191 aa8.23□□□□□ -1.09
CCDC40-204ENST00000397545 IGKV2D-26A0A0A0MRZ7 120 aa8.23□□□□□ -1.09
CCDC40-204ENST00000397545 ELANEP08246 267 aa8.23□□□□□ -1.09
CCDC40-204ENST00000397545 HAMPP81172 84 aa8.23□□□□□ -1.09
CCDC40-204ENST00000397545 XCL1P47992 114 aa8.22□□□□□ -1.09
CCDC40-204ENST00000397545 ANKRD29Q8N6D5 301 aa8.22□□□□□ -1.09
CCDC40-204ENST00000397545 HIGD1BQ9P298 99 aa8.22□□□□□ -1.09
CCDC40-204ENST00000397545 GHRHP01286 108 aa8.22□□□□□ -1.09
CCDC40-204ENST00000397545 CEMP1Q6PRD7 247 aaPredicted RBP8.22□□□□□ -1.09
CCDC40-204ENST00000397545 C9orf47Q6ZRZ4 202 aa8.22□□□□□ -1.09
CCDC40-204ENST00000397545 DNAJC30Q96LL9 226 aa8.22□□□□□ -1.09
CCDC40-204ENST00000397545 LINC00310P59036 64 aa8.21□□□□□ -1.09
CCDC40-204ENST00000397545 HERVK_113P63121 156 aa8.21□□□□□ -1.09
CCDC40-204ENST00000397545 E9PLD3 99 aa8.21□□□□□ -1.1
CCDC40-204ENST00000397545 TEN1Q86WV5 123 aa8.21□□□□□ -1.1
CCDC40-204ENST00000397545 C3orf56Q8N813 242 aa8.21□□□□□ -1.1
CCDC40-204ENST00000397545 LINC00574Q9H8X3 128 aa8.21□□□□□ -1.1
CCDC40-204ENST00000397545 SS18L2Q9UHA2 77 aa8.21□□□□□ -1.1
CCDC40-204ENST00000397545 RAI1Q7Z5J4 1906 aaPredicted RBP8.21□□□□□ -1.1
CCDC40-204ENST00000397545 BAALC-AS2P0C853 105 aa8.2□□□□□ -1.1
CCDC40-204ENST00000397545 RELNP78509 3460 aa8.2□□□□□ -1.1
CCDC40-204ENST00000397545 A0A0J9YY99 117 aa8.2□□□□□ -1.1
CCDC40-204ENST00000397545 ANGP03950 147 aaKnown RBP8.2□□□□□ -1.1
CCDC40-204ENST00000397545 G3V4G9 280 aa8.2□□□□□ -1.1
CCDC40-204ENST00000397545 LINC01620Q4KN68 170 aa8.2□□□□□ -1.1
CCDC40-204ENST00000397545 CCDC140Q96MF4 163 aa8.2□□□□□ -1.1
CCDC40-204ENST00000397545 OVOL2Q9BRP0 275 aa8.19□□□□□ -1.1
CCDC40-204ENST00000397545 ESM1Q9NQ30 184 aa8.19□□□□□ -1.1
CCDC40-204ENST00000397545 VPREB3Q9UKI3 123 aa8.19□□□□□ -1.1
CCDC40-204ENST00000397545 H3BUA1 57 aa8.19□□□□□ -1.1
CCDC40-204ENST00000397545 DAD1P61803 113 aa8.19□□□□□ -1.1
CCDC40-204ENST00000397545 FOXI1Q12951 378 aa8.19□□□□□ -1.1
CCDC40-204ENST00000397545 TOMM6Q96B49 74 aa8.19□□□□□ -1.1
CCDC40-204ENST00000397545 IGHV4OR15-8A0A075B7B6 117 aa8.19□□□□□ -1.1
CCDC40-204ENST00000397545 A0A087WW49 117 aa8.19□□□□□ -1.1
CCDC40-204ENST00000397545 IGLC6P0CF74 106 aa8.18□□□□□ -1.1
CCDC40-204ENST00000397545 MAPKAPK5-AS1Q8N8E1 139 aa8.18□□□□□ -1.1
CCDC40-204ENST00000397545 IGLV10-54A0A075B6I4 117 aa8.18□□□□□ -1.1
CCDC40-204ENST00000397545 TRBV6-1A0A0K0K1D8 114 aa8.18□□□□□ -1.1
CCDC40-204ENST00000397545 P0DMU3 169 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms