RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 POM121L12Q8N7R1 296 aa7.4□□□□□ -1.22
VPS53-202ENST00000389040 RASL10AQ92737 203 aa7.4□□□□□ -1.22
VPS53-202ENST00000389040 C18orf15Q96N68 181 aa7.4□□□□□ -1.22
VPS53-202ENST00000389040 C20orf78Q9BR46 151 aa7.4□□□□□ -1.22
VPS53-202ENST00000389040 SMIM2Q9BVW6 85 aa7.4□□□□□ -1.22
VPS53-202ENST00000389040 MRPS16Q9Y3D3 137 aaKnown RBP7.4□□□□□ -1.22
VPS53-202ENST00000389040 IGHV1OR15-1A0A075B7D0 117 aa7.4□□□□□ -1.23
VPS53-202ENST00000389040 SMIM17P0DL12 118 aa7.4□□□□□ -1.23
VPS53-202ENST00000389040 RPL35AP18077 110 aaKnown RBP7.4□□□□□ -1.23
VPS53-202ENST00000389040 SUMO2P61956 95 aaKnown RBP7.4□□□□□ -1.23
VPS53-202ENST00000389040 BATFQ16520 125 aa7.4□□□□□ -1.23
VPS53-202ENST00000389040 KIF25-AS1Q9Y6Z4 181 aa7.4□□□□□ -1.23
VPS53-202ENST00000389040 TCAPO15273 167 aa7.39□□□□□ -1.23
VPS53-202ENST00000389040 PPP1R17O96001 155 aa7.39□□□□□ -1.23
VPS53-202ENST00000389040 RNF183Q96D59 192 aa7.39□□□□□ -1.23
VPS53-202ENST00000389040 RPL39LQ96EH5 51 aaKnown RBP7.39□□□□□ -1.23
VPS53-202ENST00000389040 C9orf85Q96MD7 179 aa7.39□□□□□ -1.23
VPS53-202ENST00000389040 LINC00315P59091 139 aa7.39□□□□□ -1.23
VPS53-202ENST00000389040 SLC25A34Q6PIV7 304 aa7.39□□□□□ -1.23
VPS53-202ENST00000389040 MDFICQ9P1T7 246 aa7.39□□□□□ -1.23
VPS53-202ENST00000389040 MUC4Q99102 2169 aa7.38□□□□□ -1.23
VPS53-202ENST00000389040 NUDT3O95989 172 aa7.38□□□□□ -1.23
VPS53-202ENST00000389040 TNP2Q05952 138 aa7.38□□□□□ -1.23
VPS53-202ENST00000389040 SYT8Q8NBV8 401 aa7.38□□□□□ -1.23
VPS53-202ENST00000389040 TP73-AS1Q9UF72 201 aa7.38□□□□□ -1.23
VPS53-202ENST00000389040 K7EMI3 77 aa7.37□□□□□ -1.23
VPS53-202ENST00000389040 ATP5LO75964 103 aa7.37□□□□□ -1.23
VPS53-202ENST00000389040 GIG44P09565 113 aaPredicted RBP7.37□□□□□ -1.23
VPS53-202ENST00000389040 ORMDL2Q53FV1 153 aa7.37□□□□□ -1.23
VPS53-202ENST00000389040 CSNK1G2-AS1Q8NCQ2 148 aa7.37□□□□□ -1.23
VPS53-202ENST00000389040 DKK2Q9UBU2 259 aa7.37□□□□□ -1.23
VPS53-202ENST00000389040 AGRNO00468 2067 aa7.37□□□□□ -1.23
VPS53-202ENST00000389040 TRGV11A0A075B6L2 103 aa7.37□□□□□ -1.23
VPS53-202ENST00000389040 A0A087WWL8 130 aa7.37□□□□□ -1.23
VPS53-202ENST00000389040 SMIM9A6NGZ8 99 aa7.37□□□□□ -1.23
VPS53-202ENST00000389040 PRSS1P07477 247 aa7.37□□□□□ -1.23
VPS53-202ENST00000389040 ODF1Q14990 250 aa7.37□□□□□ -1.23
VPS53-202ENST00000389040 OVOL2Q9BRP0 275 aa7.37□□□□□ -1.23
VPS53-202ENST00000389040 JPT2Q9H910 190 aa7.37□□□□□ -1.23
VPS53-202ENST00000389040 CBY3A6NI87 242 aa7.36□□□□□ -1.23
VPS53-202ENST00000389040 RBMY1A1P0DJD3 496 aaKnown RBP7.36□□□□□ -1.23
VPS53-202ENST00000389040 RBMY1CP0DJD4 496 aa7.36□□□□□ -1.23
VPS53-202ENST00000389040 COX8AP10176 69 aa7.36□□□□□ -1.23
VPS53-202ENST00000389040 RBMY1FQ15415 496 aaKnown RBP7.36□□□□□ -1.23
VPS53-202ENST00000389040 ANKRD39Q53RE8 183 aa7.36□□□□□ -1.23
VPS53-202ENST00000389040 COL5A1-AS1Q5SY13 56 aa7.36□□□□□ -1.23
VPS53-202ENST00000389040 SUMO4Q6EEV6 95 aa7.36□□□□□ -1.23
VPS53-202ENST00000389040 MIFP14174 115 aa7.35□□□□□ -1.23
VPS53-202ENST00000389040 HINT1P49773 126 aaPredicted RBP7.35□□□□□ -1.23
VPS53-202ENST00000389040 DEFB135Q30KP9 77 aa7.35□□□□□ -1.23
VPS53-202ENST00000389040 STPG4Q8N801 248 aa7.35□□□□□ -1.23
VPS53-202ENST00000389040 PRKDCP78527 4128 aaKnown RBP7.35□□□□□ -1.23
VPS53-202ENST00000389040 F5H697 171 aa7.35□□□□□ -1.23
VPS53-202ENST00000389040 INSP01308 110 aa7.35□□□□□ -1.23
VPS53-202ENST00000389040 RPL32P62910 135 aaKnown RBP7.35□□□□□ -1.23
VPS53-202ENST00000389040 FAM74A4Q5TZK3 123 aa7.35□□□□□ -1.23
VPS53-202ENST00000389040 XCL2Q9UBD3 114 aa7.35□□□□□ -1.23
VPS53-202ENST00000389040 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.34□□□□□ -1.23
VPS53-202ENST00000389040 ZNF876PQ49A33 203 aa7.34□□□□□ -1.23
VPS53-202ENST00000389040 OR11H2Q8NH07 326 aa7.34□□□□□ -1.23
VPS53-202ENST00000389040 TOMM6Q96B49 74 aa7.34□□□□□ -1.23
VPS53-202ENST00000389040 IGKCP01834 107 aa7.33□□□□□ -1.24
VPS53-202ENST00000389040 CRYGDP07320 174 aa7.33□□□□□ -1.24
VPS53-202ENST00000389040 DPM2O94777 84 aa7.33□□□□□ -1.24
VPS53-202ENST00000389040 FGF6P10767 208 aa7.33□□□□□ -1.24
VPS53-202ENST00000389040 HTN1P15515 57 aa7.33□□□□□ -1.24
VPS53-202ENST00000389040 POLR2KP53803 58 aaKnown RBP7.33□□□□□ -1.24
VPS53-202ENST00000389040 ZNF56Q15929 161 aa7.33□□□□□ -1.24
VPS53-202ENST00000389040 LINC00469Q8N7U9 141 aa7.33□□□□□ -1.24
VPS53-202ENST00000389040 IL17DQ8TAD2 202 aa7.33□□□□□ -1.24
VPS53-202ENST00000389040 SCGB3A1Q96QR1 104 aa7.33□□□□□ -1.24
VPS53-202ENST00000389040 LINC00467Q9BRT7 94 aa7.33□□□□□ -1.24
VPS53-202ENST00000389040 C11orf68Q9H3H3 251 aaKnown RBP7.33□□□□□ -1.24
VPS53-202ENST00000389040 A0A087WX48 190 aa7.32□□□□□ -1.24
VPS53-202ENST00000389040 TRBV6-5A0A0K0K1A5 114 aa7.32□□□□□ -1.24
VPS53-202ENST00000389040 M0QY20 66 aa7.32□□□□□ -1.24
VPS53-202ENST00000389040 VCYO14598 125 aa7.32□□□□□ -1.24
VPS53-202ENST00000389040 TCTAP57738 103 aa7.32□□□□□ -1.24
VPS53-202ENST00000389040 MPV17L2Q567V2 206 aa7.32□□□□□ -1.24
VPS53-202ENST00000389040 C2orf66Q6UXQ4 117 aa7.32□□□□□ -1.24
VPS53-202ENST00000389040 C2orf91Q6ZV80 131 aa7.32□□□□□ -1.24
VPS53-202ENST00000389040 NEGR1Q7Z3B1 354 aa7.32□□□□□ -1.24
VPS53-202ENST00000389040 BOD1L2Q8IYS8 172 aa7.32□□□□□ -1.24
VPS53-202ENST00000389040 TMEM208Q9BTX3 173 aa7.32□□□□□ -1.24
VPS53-202ENST00000389040 MRPL35Q9NZE8 188 aaKnown RBP7.32□□□□□ -1.24
VPS53-202ENST00000389040 HHLA3Q9XRX5 114 aa7.32□□□□□ -1.24
VPS53-202ENST00000389040 TRAV12-1A0A0B4J245 112 aa7.31□□□□□ -1.24
VPS53-202ENST00000389040 SDHAF1A6NFY7 115 aa7.31□□□□□ -1.24
VPS53-202ENST00000389040 G0S2P27469 103 aa7.31□□□□□ -1.24
VPS53-202ENST00000389040 TRBV27A0A0K0K1C4 114 aa7.31□□□□□ -1.24
VPS53-202ENST00000389040 DLEU1O43261 78 aa7.31□□□□□ -1.24
VPS53-202ENST00000389040 PLNP26678 52 aa7.31□□□□□ -1.24
VPS53-202ENST00000389040 NMUP48645 174 aa7.31□□□□□ -1.24
VPS53-202ENST00000389040 ZFP2Q6ZN57 461 aa7.31□□□□□ -1.24
VPS53-202ENST00000389040 C1orf158Q8N1D5 194 aa7.31□□□□□ -1.24
VPS53-202ENST00000389040 KIR2DL4Q99706 377 aa7.31□□□□□ -1.24
VPS53-202ENST00000389040 X6R8D5 127 aa7.31□□□□□ -1.24
VPS53-202ENST00000389040 TEX48A0A1B0GUV7 120 aa7.3□□□□□ -1.24
VPS53-202ENST00000389040 ZNF415Q09FC8 603 aa7.3□□□□□ -1.24
VPS53-202ENST00000389040 RRN3P1Q2M238 152 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms