RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 HLA-DRB4X5D2U9 266 aa9.84□□□□□ -0.83
CCDC3-202ENST00000378839 PDZD2O15018 2839 aa9.84□□□□□ -0.83
CCDC3-202ENST00000378839 IGIPA6NJ69 53 aa9.84□□□□□ -0.83
CCDC3-202ENST00000378839 M0QY20 66 aa9.84□□□□□ -0.83
CCDC3-202ENST00000378839 SMIM13P0DJ93 91 aa9.84□□□□□ -0.83
CCDC3-202ENST00000378839 FOXI2Q6ZQN5 318 aa9.84□□□□□ -0.83
CCDC3-202ENST00000378839 NIPBLQ6KC79 2804 aaeCLIP9.84□□□□□ -0.83
CCDC3-202ENST00000378839 A0A1B0GV72 72 aa9.83□□□□□ -0.84
CCDC3-202ENST00000378839 PLNP26678 52 aa9.83□□□□□ -0.84
CCDC3-202ENST00000378839 DLX4Q92988 240 aaPredicted RBP9.83□□□□□ -0.84
CCDC3-202ENST00000378839 TP53TG1Q9Y2A0 90 aa9.83□□□□□ -0.84
CCDC3-202ENST00000378839 CRYBA4P53673 196 aa9.83□□□□□ -0.84
CCDC3-202ENST00000378839 EMP1P54849 157 aa9.83□□□□□ -0.84
CCDC3-202ENST00000378839 DEFB131AP59861 70 aa9.83□□□□□ -0.84
CCDC3-202ENST00000378839 TMEM61Q8N0U2 210 aa9.83□□□□□ -0.84
CCDC3-202ENST00000378839 SDHAF1A6NFY7 115 aa9.83□□□□□ -0.84
CCDC3-202ENST00000378839 IGLV4-69A0A075B6H9 119 aa9.82□□□□□ -0.84
CCDC3-202ENST00000378839 Q9UF83 564 aa9.82□□□□□ -0.84
CCDC3-202ENST00000378839 PROK1P58294 105 aa9.82□□□□□ -0.84
CCDC3-202ENST00000378839 RPL32P62910 135 aaKnown RBP9.82□□□□□ -0.84
CCDC3-202ENST00000378839 SCGB2A2Q13296 93 aa9.82□□□□□ -0.84
CCDC3-202ENST00000378839 LINC01619G3V211 115 aa9.81□□□□□ -0.84
CCDC3-202ENST00000378839 HTN1P15515 57 aa9.81□□□□□ -0.84
CCDC3-202ENST00000378839 PHLDA1Q8WV24 401 aaPredicted RBP9.81□□□□□ -0.84
CCDC3-202ENST00000378839 OPRPNQ99935 248 aaPredicted RBP9.81□□□□□ -0.84
CCDC3-202ENST00000378839 H3BMM0 161 aa9.81□□□□□ -0.84
CCDC3-202ENST00000378839 ZNF876PQ49A33 203 aa9.81□□□□□ -0.84
CCDC3-202ENST00000378839 ZNF256Q9Y2P7 627 aaPredicted RBP9.81□□□□□ -0.84
CCDC3-202ENST00000378839 TRBV27A0A0K0K1C4 114 aa9.81□□□□□ -0.84
CCDC3-202ENST00000378839 P0DMU3 169 aa9.81□□□□□ -0.84
CCDC3-202ENST00000378839 FAM231AP0DMU4 169 aa9.81□□□□□ -0.84
CCDC3-202ENST00000378839 FAM231CP0DMU5 169 aa9.81□□□□□ -0.84
CCDC3-202ENST00000378839 Q6ZSV7 163 aa9.81□□□□□ -0.84
CCDC3-202ENST00000378839 ESM1Q9NQ30 184 aa9.81□□□□□ -0.84
CCDC3-202ENST00000378839 A0A1B0GWB2 263 aa9.8□□□□□ -0.84
CCDC3-202ENST00000378839 PPP1R17O96001 155 aa9.8□□□□□ -0.84
CCDC3-202ENST00000378839 ZNF56Q15929 161 aa9.8□□□□□ -0.84
CCDC3-202ENST00000378839 C4orf3Q8WVX3 66 aa9.8□□□□□ -0.84
CCDC3-202ENST00000378839 SPAG8Q99932 426 aaPredicted RBP9.8□□□□□ -0.84
CCDC3-202ENST00000378839 FLNAP21333 2647 aaKnown RBP9.8□□□□□ -0.84
CCDC3-202ENST00000378839 TRBV6-5A0A0K0K1A5 114 aa9.8□□□□□ -0.84
CCDC3-202ENST00000378839 VCYO14598 125 aa9.8□□□□□ -0.84
CCDC3-202ENST00000378839 CEND1Q8N111 149 aa9.8□□□□□ -0.84
CCDC3-202ENST00000378839 C11orf44Q8N8P7 122 aa9.8□□□□□ -0.84
CCDC3-202ENST00000378839 IGHV3-73A0A0B4J1V6 119 aa9.79□□□□□ -0.84
CCDC3-202ENST00000378839 C11orf86A6NJI1 115 aa9.79□□□□□ -0.84
CCDC3-202ENST00000378839 A8MTW9 85 aa9.79□□□□□ -0.84
CCDC3-202ENST00000378839 KHDC1LQ5JSQ8 128 aa9.79□□□□□ -0.84
CCDC3-202ENST00000378839 TM2D2Q9BX73 214 aa9.79□□□□□ -0.84
CCDC3-202ENST00000378839 CYSLTR1Q9Y271 337 aa9.79□□□□□ -0.84
CCDC3-202ENST00000378839 ZNF418Q8TF45 676 aaPredicted RBP9.79□□□□□ -0.84
CCDC3-202ENST00000378839 KLHL30-AS1Q8NEE0 82 aa9.79□□□□□ -0.84
CCDC3-202ENST00000378839 SS18L2Q9UHA2 77 aa9.79□□□□□ -0.84
CCDC3-202ENST00000378839 Q6ZSN1 163 aa9.78□□□□□ -0.84
CCDC3-202ENST00000378839 OR5A1Q8NGJ0 315 aa9.78□□□□□ -0.84
CCDC3-202ENST00000378839 PTH2Q96A98 100 aa9.78□□□□□ -0.84
CCDC3-202ENST00000378839 CD300EQ496F6 205 aaPredicted RBP9.78□□□□□ -0.84
CCDC3-202ENST00000378839 ZNRF2Q8NHG8 242 aa9.78□□□□□ -0.84
CCDC3-202ENST00000378839 PLEKHB2Q96CS7 222 aa9.78□□□□□ -0.84
CCDC3-202ENST00000378839 PRADC1Q9BSG0 188 aa9.78□□□□□ -0.84
CCDC3-202ENST00000378839 GEMIN7Q9H840 131 aaKnown RBP9.78□□□□□ -0.84
CCDC3-202ENST00000378839 CCDC168Q8NDH2 2452 aa9.78□□□□□ -0.84
CCDC3-202ENST00000378839 TRBV7-3A0A075B6L6 115 aa9.77□□□□□ -0.84
CCDC3-202ENST00000378839 DNAJC9-AS1A6NH13 148 aa9.77□□□□□ -0.84
CCDC3-202ENST00000378839 DEFB114Q30KQ6 69 aa9.77□□□□□ -0.84
CCDC3-202ENST00000378839 ZNF479Q96JC4 524 aa9.77□□□□□ -0.84
CCDC3-202ENST00000378839 MAP6D1Q9H9H5 199 aa9.77□□□□□ -0.84
CCDC3-202ENST00000378839 MYMXA0A1B0GTQ4 84 aa9.77□□□□□ -0.85
CCDC3-202ENST00000378839 E9PLD3 99 aa9.77□□□□□ -0.85
CCDC3-202ENST00000378839 SYT8Q8NBV8 401 aa9.77□□□□□ -0.85
CCDC3-202ENST00000378839 RAX2Q96IS3 184 aa9.77□□□□□ -0.85
CCDC3-202ENST00000378839 KIR2DL4Q99706 377 aa9.77□□□□□ -0.85
CCDC3-202ENST00000378839 NOTCH3Q9UM47 2321 aa9.76□□□□□ -0.85
CCDC3-202ENST00000378839 KRTAP1-1Q07627 177 aa9.76□□□□□ -0.85
CCDC3-202ENST00000378839 FAM104AQ969W3 186 aa9.76□□□□□ -0.85
CCDC3-202ENST00000378839 NACAE9PAV3 2078 aa9.76□□□□□ -0.85
CCDC3-202ENST00000378839 LOC107984156A0A0G2JMH3 177 aa9.76□□□□□ -0.85
CCDC3-202ENST00000378839 TSPEAR-AS2P59090 65 aa9.76□□□□□ -0.85
CCDC3-202ENST00000378839 ARL17AQ8IVW1 177 aa9.76□□□□□ -0.85
CCDC3-202ENST00000378839 A0A1W2PRX2 142 aa9.75□□□□□ -0.85
CCDC3-202ENST00000378839 HIST1H4GQ99525 98 aa9.75□□□□□ -0.85
CCDC3-202ENST00000378839 OR11H12B2RN74 326 aa9.75□□□□□ -0.85
CCDC3-202ENST00000378839 PMVKQ15126 192 aa9.75□□□□□ -0.85
CCDC3-202ENST00000378839 OR11H2Q8NH07 326 aa9.75□□□□□ -0.85
CCDC3-202ENST00000378839 TRGV11A0A075B6L2 103 aa9.74□□□□□ -0.85
CCDC3-202ENST00000378839 J3QR89 54 aa9.74□□□□□ -0.85
CCDC3-202ENST00000378839 TRPT1Q86TN4 253 aaKnown RBP9.74□□□□□ -0.85
CCDC3-202ENST00000378839 TIMM17AQ99595 171 aa9.74□□□□□ -0.85
CCDC3-202ENST00000378839 SPANXB1Q9NS25 103 aaPredicted RBP9.74□□□□□ -0.85
CCDC3-202ENST00000378839 PEMTQ9UBM1 199 aa9.74□□□□□ -0.85
CCDC3-202ENST00000378839 ITPR2Q14571 2701 aa9.74□□□□□ -0.85
CCDC3-202ENST00000378839 CD28P10747 220 aa9.74□□□□□ -0.85
CCDC3-202ENST00000378839 C11orf72Q8NBR9 251 aa9.74□□□□□ -0.85
CCDC3-202ENST00000378839 ACANP16112 2415 aa9.74□□□□□ -0.85
CCDC3-202ENST00000378839 MT-ATP8P03928 68 aa9.73□□□□□ -0.85
CCDC3-202ENST00000378839 NSUN5P1Q3KNT7 163 aa9.73□□□□□ -0.85
CCDC3-202ENST00000378839 HELZ2Q9BYK8 2649 aaKnown RBP9.73□□□□□ -0.85
CCDC3-202ENST00000378839 ODF3L2Q3SX64 289 aa9.73□□□□□ -0.85
CCDC3-202ENST00000378839 TMEM141Q96I45 108 aa9.73□□□□□ -0.85
CCDC3-202ENST00000378839 APOMO95445 188 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms