RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 DEFB136Q30KP8 78 aa10.6□□□□□ -0.71
COL6A1-201ENST00000361866 PTPRBP23467 1997 aa10.59□□□□□ -0.71
COL6A1-201ENST00000361866 IGHV4-61A0A0C4DH41 118 aa10.59□□□□□ -0.71
COL6A1-201ENST00000361866 C5orf56Q8N8D9 126 aa10.59□□□□□ -0.71
COL6A1-201ENST00000361866 FSTL3O95633 263 aa10.59□□□□□ -0.71
COL6A1-201ENST00000361866 CRPP02741 224 aa10.59□□□□□ -0.71
COL6A1-201ENST00000361866 CEMP1Q6PRD7 247 aaPredicted RBP10.59□□□□□ -0.71
COL6A1-201ENST00000361866 Q8N1Y9 231 aa10.59□□□□□ -0.71
COL6A1-201ENST00000361866 FRYQ5TBA9 3013 aa10.59□□□□□ -0.71
COL6A1-201ENST00000361866 MT-ATP8P03928 68 aa10.59□□□□□ -0.71
COL6A1-201ENST00000361866 U3KQK5 164 aa10.59□□□□□ -0.71
COL6A1-201ENST00000361866 RPL35AP18077 110 aaKnown RBP10.58□□□□□ -0.72
COL6A1-201ENST00000361866 IGHV4-59P01825 116 aa10.58□□□□□ -0.72
COL6A1-201ENST00000361866 HTN3P15516 51 aa10.58□□□□□ -0.72
COL6A1-201ENST00000361866 TCL1BO95988 128 aa10.58□□□□□ -0.72
COL6A1-201ENST00000361866 PFN2P35080 140 aa10.57□□□□□ -0.72
COL6A1-201ENST00000361866 NDUFA11Q86Y39 141 aa10.57□□□□□ -0.72
COL6A1-201ENST00000361866 LY6LH3BQJ8 138 aa10.57□□□□□ -0.72
COL6A1-201ENST00000361866 HIST1H4AP62805 103 aaKnown RBP10.57□□□□□ -0.72
COL6A1-201ENST00000361866 ADORA2A-AS1P86434 159 aa10.57□□□□□ -0.72
COL6A1-201ENST00000361866 HHLA3Q9XRX5 114 aa10.57□□□□□ -0.72
COL6A1-201ENST00000361866 C20orf173Q96LM9 149 aa10.56□□□□□ -0.72
COL6A1-201ENST00000361866 MYO15AQ9UKN7 3530 aa10.56□□□□□ -0.72
COL6A1-201ENST00000361866 TNRC6BQ9UPQ9 1833 aaKnown RBP10.56□□□□□ -0.72
COL6A1-201ENST00000361866 FASNP49327 2511 aaKnown RBP10.56□□□□□ -0.72
COL6A1-201ENST00000361866 LINC01620Q4KN68 170 aa10.55□□□□□ -0.72
COL6A1-201ENST00000361866 UFSP1Q6NVU6 142 aa10.55□□□□□ -0.72
COL6A1-201ENST00000361866 ZFAND3Q9H8U3 227 aa10.55□□□□□ -0.72
COL6A1-201ENST00000361866 RBMY1BA6NDE4 496 aaKnown RBP10.55□□□□□ -0.72
COL6A1-201ENST00000361866 RBMY1EA6NEQ0 496 aaKnown RBP10.55□□□□□ -0.72
COL6A1-201ENST00000361866 RBMY1DP0C7P1 496 aaKnown RBP10.55□□□□□ -0.72
COL6A1-201ENST00000361866 RBMY1A1P0DJD3 496 aaKnown RBP10.55□□□□□ -0.72
COL6A1-201ENST00000361866 RBMY1CP0DJD4 496 aa10.55□□□□□ -0.72
COL6A1-201ENST00000361866 PRR9Q5T870 116 aa10.55□□□□□ -0.72
COL6A1-201ENST00000361866 CFAP161Q6P656 301 aa10.55□□□□□ -0.72
COL6A1-201ENST00000361866 LEPROTO15243 131 aa10.54□□□□□ -0.72
COL6A1-201ENST00000361866 INSP01308 110 aa10.54□□□□□ -0.72
COL6A1-201ENST00000361866 SIRPDQ9H106 197 aa10.54□□□□□ -0.72
COL6A1-201ENST00000361866 Q9H8V8 135 aa10.54□□□□□ -0.72
COL6A1-201ENST00000361866 ODF3BA8MYP8 253 aa10.54□□□□□ -0.72
COL6A1-201ENST00000361866 RNF223E7ERA6 249 aa10.54□□□□□ -0.72
COL6A1-201ENST00000361866 C6orf226Q5I0X4 101 aa10.54□□□□□ -0.72
COL6A1-201ENST00000361866 NEXN-AS1Q8NBZ9 246 aa10.54□□□□□ -0.72
COL6A1-201ENST00000361866 P0DMU3 169 aa10.54□□□□□ -0.72
COL6A1-201ENST00000361866 FAM231AP0DMU4 169 aa10.54□□□□□ -0.72
COL6A1-201ENST00000361866 FAM231CP0DMU5 169 aa10.54□□□□□ -0.72
COL6A1-201ENST00000361866 MAP1AP78559 2803 aaPredicted RBP10.54□□□□□ -0.72
COL6A1-201ENST00000361866 ADAMTS20P59510 1910 aa10.54□□□□□ -0.72
COL6A1-201ENST00000361866 NRACQ8N912 160 aa10.54□□□□□ -0.72
COL6A1-201ENST00000361866 PRB1P04280 392 aa10.53□□□□□ -0.72
COL6A1-201ENST00000361866 DEFB130BP0DP73 79 aa10.53□□□□□ -0.72
COL6A1-201ENST00000361866 DEFB130AP0DP74 79 aa10.53□□□□□ -0.72
COL6A1-201ENST00000361866 CLEC2BQ92478 149 aa10.53□□□□□ -0.72
COL6A1-201ENST00000361866 RHOHQ15669 191 aa10.53□□□□□ -0.72
COL6A1-201ENST00000361866 DEFB112Q30KQ8 113 aa10.53□□□□□ -0.72
COL6A1-201ENST00000361866 APRG1Q8IVJ8 170 aa10.53□□□□□ -0.72
COL6A1-201ENST00000361866 SPANXA1Q9NS26 97 aa10.53□□□□□ -0.72
COL6A1-201ENST00000361866 Q6ZUT4 128 aa10.52□□□□□ -0.72
COL6A1-201ENST00000361866 MRPS12O15235 138 aaKnown RBP10.52□□□□□ -0.73
COL6A1-201ENST00000361866 HOXD3P31249 432 aaPredicted RBP10.52□□□□□ -0.73
COL6A1-201ENST00000361866 ZFAND2AQ8N6M9 145 aa10.52□□□□□ -0.73
COL6A1-201ENST00000361866 NRGNQ92686 78 aa10.52□□□□□ -0.73
COL6A1-201ENST00000361866 EPG5Q9HCE0 2579 aa10.52□□□□□ -0.73
COL6A1-201ENST00000361866 RHODO00212 210 aa10.51□□□□□ -0.73
COL6A1-201ENST00000361866 DSCR9P59020 149 aa10.51□□□□□ -0.73
COL6A1-201ENST00000361866 TIMM17AQ99595 171 aa10.51□□□□□ -0.73
COL6A1-201ENST00000361866 IGHV4-30-2A0A087WSY4 118 aa10.51□□□□□ -0.73
COL6A1-201ENST00000361866 A0A0J9YY99 117 aa10.51□□□□□ -0.73
COL6A1-201ENST00000361866 PF4P02776 101 aa10.51□□□□□ -0.73
COL6A1-201ENST00000361866 SRSF2Q01130 221 aaKnown RBP10.5□□□□□ -0.73
COL6A1-201ENST00000361866 NXPH4O95158 308 aa10.5□□□□□ -0.73
COL6A1-201ENST00000361866 PRRC2AP48634 2157 aaKnown RBP10.5□□□□□ -0.73
COL6A1-201ENST00000361866 TMEM86BQ8N661 226 aa10.5□□□□□ -0.73
COL6A1-201ENST00000361866 IGHV3-30-3P0DP02 117 aa10.5□□□□□ -0.73
COL6A1-201ENST00000361866 MALP21145 153 aa10.49□□□□□ -0.73
COL6A1-201ENST00000361866 MRGPRG-AS1Q2M3A8 158 aa10.49□□□□□ -0.73
COL6A1-201ENST00000361866 Q6ZS46 218 aa10.49□□□□□ -0.73
COL6A1-201ENST00000361866 U3KQE9 123 aa10.49□□□□□ -0.73
COL6A1-201ENST00000361866 TEX49A0A1B0GTD5 131 aa10.49□□□□□ -0.73
COL6A1-201ENST00000361866 MRPL23Q16540 153 aaKnown RBP10.49□□□□□ -0.73
COL6A1-201ENST00000361866 NSUN5P1Q3KNT7 163 aa10.49□□□□□ -0.73
COL6A1-201ENST00000361866 C20orf203Q8NBC4 194 aa10.49□□□□□ -0.73
COL6A1-201ENST00000361866 ICOSQ9Y6W8 199 aa10.49□□□□□ -0.73
COL6A1-201ENST00000361866 SLURP1P55000 103 aa10.49□□□□□ -0.73
COL6A1-201ENST00000361866 TNFRSF13BO14836 293 aaPredicted RBP10.48□□□□□ -0.73
COL6A1-201ENST00000361866 LMO4P61968 165 aa10.48□□□□□ -0.73
COL6A1-201ENST00000361866 CDSNQ15517 529 aa10.47□□□□□ -0.73
COL6A1-201ENST00000361866 TINCRA0A1B0GVN0 87 aa10.47□□□□□ -0.73
COL6A1-201ENST00000361866 F8W735 103 aaPredicted RBP10.47□□□□□ -0.73
COL6A1-201ENST00000361866 LINC01356Q8N9X3 169 aa10.47□□□□□ -0.73
COL6A1-201ENST00000361866 COL6A3P12111 3177 aa10.47□□□□□ -0.73
COL6A1-201ENST00000361866 SLC25A29Q8N8R3 303 aa10.47□□□□□ -0.73
COL6A1-201ENST00000361866 DOPEY1Q5JWR5 2465 aa10.46□□□□□ -0.73
COL6A1-201ENST00000361866 CENPEQ02224 2701 aa10.46□□□□□ -0.73
COL6A1-201ENST00000361866 A8MZ25 164 aa10.46□□□□□ -0.73
COL6A1-201ENST00000361866 TRBV7-3A0A075B6L6 115 aa10.46□□□□□ -0.74
COL6A1-201ENST00000361866 BAALC-AS2P0C853 105 aa10.46□□□□□ -0.74
COL6A1-201ENST00000361866 S100A7L2Q5SY68 101 aa10.46□□□□□ -0.74
COL6A1-201ENST00000361866 CLPSL2Q6UWE3 100 aa10.46□□□□□ -0.74
COL6A1-201ENST00000361866 A0A096LPF7 62 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms