RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 CEMP1Q6PRD7 247 aaPredicted RBP9.03□□□□□ -0.96
CLIP3-201ENST00000360535 PRRC2AP48634 2157 aaKnown RBP9.03□□□□□ -0.96
CLIP3-201ENST00000360535 MXRA5Q9NR99 2828 aa9.03□□□□□ -0.96
CLIP3-201ENST00000360535 CCDC168Q8NDH2 2452 aa9.03□□□□□ -0.96
CLIP3-201ENST00000360535 COX6B1P14854 86 aa9.03□□□□□ -0.96
CLIP3-201ENST00000360535 PROK1P58294 105 aa9.03□□□□□ -0.96
CLIP3-201ENST00000360535 NPC2P61916 151 aa9.03□□□□□ -0.96
CLIP3-201ENST00000360535 SNRPD3P62318 126 aaKnown RBP9.03□□□□□ -0.96
CLIP3-201ENST00000360535 J3QQQ9 107 aa9.02□□□□□ -0.97
CLIP3-201ENST00000360535 Q1RN00 199 aa9.02□□□□□ -0.97
CLIP3-201ENST00000360535 DEFB112Q30KQ8 113 aa9.02□□□□□ -0.97
CLIP3-201ENST00000360535 SYT8Q8NBV8 401 aa9.02□□□□□ -0.97
CLIP3-201ENST00000360535 PRO0461Q9UI25 63 aa9.02□□□□□ -0.97
CLIP3-201ENST00000360535 DOPEY1Q5JWR5 2465 aa9.02□□□□□ -0.97
CLIP3-201ENST00000360535 A0A0J9YXV3 536 aa9.02□□□□□ -0.97
CLIP3-201ENST00000360535 CRYBA4P53673 196 aa9.02□□□□□ -0.97
CLIP3-201ENST00000360535 SPXQ9BT56 116 aa9.02□□□□□ -0.97
CLIP3-201ENST00000360535 DEFB136Q30KP8 78 aa9.01□□□□□ -0.97
CLIP3-201ENST00000360535 DUX3Q96PT4 197 aa9.01□□□□□ -0.97
CLIP3-201ENST00000360535 GEMIN7Q9H840 131 aaKnown RBP9.01□□□□□ -0.97
CLIP3-201ENST00000360535 PRSS2P07478 247 aa9.01□□□□□ -0.97
CLIP3-201ENST00000360535 SMCPP49901 116 aaPredicted RBP9.01□□□□□ -0.97
CLIP3-201ENST00000360535 KHDC1LQ5JSQ8 128 aa9.01□□□□□ -0.97
CLIP3-201ENST00000360535 NDUFA11Q86Y39 141 aa9.01□□□□□ -0.97
CLIP3-201ENST00000360535 IGHV3-16A0A0C4DH30 117 aa9.01□□□□□ -0.97
CLIP3-201ENST00000360535 IGLV1-40P01703 118 aa9.01□□□□□ -0.97
CLIP3-201ENST00000360535 TEX15Q9BXT5 2789 aa9.01□□□□□ -0.97
CLIP3-201ENST00000360535 NAV2Q8IVL1 2488 aa9□□□□□ -0.97
CLIP3-201ENST00000360535 FBN2P35556 2912 aa9□□□□□ -0.97
CLIP3-201ENST00000360535 TCL1BO95988 128 aa9□□□□□ -0.97
CLIP3-201ENST00000360535 CFC1BP0CG36 223 aa9□□□□□ -0.97
CLIP3-201ENST00000360535 CFC1P0CG37 223 aa9□□□□□ -0.97
CLIP3-201ENST00000360535 MED14OSP0DP75 135 aa9□□□□□ -0.97
CLIP3-201ENST00000360535 CRIP2P52943 208 aaPredicted RBP9□□□□□ -0.97
CLIP3-201ENST00000360535 JMJD1CQ15652 2540 aa9□□□□□ -0.97
CLIP3-201ENST00000360535 NFE4Q86UQ8 179 aa9□□□□□ -0.97
CLIP3-201ENST00000360535 IGHV4OR15-8A0A075B7B6 117 aa8.99□□□□□ -0.97
CLIP3-201ENST00000360535 IGHV1OR15-1A0A075B7D0 117 aa8.99□□□□□ -0.97
CLIP3-201ENST00000360535 A0A087WW49 117 aa8.99□□□□□ -0.97
CLIP3-201ENST00000360535 VCX2Q9H322 139 aa8.99□□□□□ -0.97
CLIP3-201ENST00000360535 A0A0J9YX75 114 aa8.99□□□□□ -0.97
CLIP3-201ENST00000360535 A4D1N5 150 aa8.99□□□□□ -0.97
CLIP3-201ENST00000360535 M0QY20 66 aa8.99□□□□□ -0.97
CLIP3-201ENST00000360535 UBE2D1P51668 147 aa8.99□□□□□ -0.97
CLIP3-201ENST00000360535 FOXI1Q12951 378 aa8.99□□□□□ -0.97
CLIP3-201ENST00000360535 PAPPA-AS1Q5QFB9 102 aa8.99□□□□□ -0.97
CLIP3-201ENST00000360535 Q9UF83 564 aa8.99□□□□□ -0.97
CLIP3-201ENST00000360535 TMEM141Q96I45 108 aa8.99□□□□□ -0.97
CLIP3-201ENST00000360535 IGSF10Q6WRI0 2623 aa8.98□□□□□ -0.97
CLIP3-201ENST00000360535 H3BUA1 57 aa8.98□□□□□ -0.97
CLIP3-201ENST00000360535 CFAP126Q5VTH2 177 aa8.98□□□□□ -0.97
CLIP3-201ENST00000360535 TRPT1Q86TN4 253 aaKnown RBP8.98□□□□□ -0.97
CLIP3-201ENST00000360535 APRG1Q8IVJ8 170 aa8.98□□□□□ -0.97
CLIP3-201ENST00000360535 CHD6Q8TD26 2715 aa8.98□□□□□ -0.97
CLIP3-201ENST00000360535 TRAV8-3A0A0A6YYJ7 113 aa8.98□□□□□ -0.97
CLIP3-201ENST00000360535 IGHV3-38A0A0C4DH36 116 aa8.98□□□□□ -0.97
CLIP3-201ENST00000360535 A8MZ25 164 aa8.98□□□□□ -0.97
CLIP3-201ENST00000360535 IGHV3-30P01768 117 aa8.98□□□□□ -0.97
CLIP3-201ENST00000360535 SPINK8P0C7L1 97 aa8.98□□□□□ -0.97
CLIP3-201ENST00000360535 IGHV3-30-5P0DP03 117 aa8.98□□□□□ -0.97
CLIP3-201ENST00000360535 TRBV27A0A0K0K1C4 114 aa8.97□□□□□ -0.97
CLIP3-201ENST00000360535 C18orf65Q6ZTR6 163 aa8.97□□□□□ -0.97
CLIP3-201ENST00000360535 TIMM17AQ99595 171 aa8.97□□□□□ -0.97
CLIP3-201ENST00000360535 B4DSR2 109 aa8.97□□□□□ -0.97
CLIP3-201ENST00000360535 CD28P10747 220 aa8.97□□□□□ -0.97
CLIP3-201ENST00000360535 SCGB1A1P11684 91 aa8.97□□□□□ -0.97
CLIP3-201ENST00000360535 DEFB131AP59861 70 aa8.97□□□□□ -0.97
CLIP3-201ENST00000360535 MUSTN1Q8IVN3 82 aa8.97□□□□□ -0.97
CLIP3-201ENST00000360535 SLC25A29Q8N8R3 303 aa8.97□□□□□ -0.97
CLIP3-201ENST00000360535 C1QTNF4Q9BXJ3 329 aa8.97□□□□□ -0.97
CLIP3-201ENST00000360535 PRO1854Q9UHT4 67 aa8.97□□□□□ -0.97
CLIP3-201ENST00000360535 LGALS9O00182 355 aa8.96□□□□□ -0.97
CLIP3-201ENST00000360535 NXPH4O95158 308 aa8.96□□□□□ -0.97
CLIP3-201ENST00000360535 PSMB8P28062 276 aa8.96□□□□□ -0.97
CLIP3-201ENST00000360535 C9JAW5 83 aa8.96□□□□□ -0.97
CLIP3-201ENST00000360535 IGHV3OR16-12A0A075B7B8 117 aa8.96□□□□□ -0.98
CLIP3-201ENST00000360535 LINC01619G3V211 115 aa8.96□□□□□ -0.98
CLIP3-201ENST00000360535 HOXD3P31249 432 aaPredicted RBP8.96□□□□□ -0.98
CLIP3-201ENST00000360535 C10orf126Q8N4M7 172 aa8.96□□□□□ -0.98
CLIP3-201ENST00000360535 NF1P21359 2839 aa8.95□□□□□ -0.98
CLIP3-201ENST00000360535 ZNF462Q96JM2 2506 aa8.95□□□□□ -0.98
CLIP3-201ENST00000360535 I3L3M4 83 aa8.95□□□□□ -0.98
CLIP3-201ENST00000360535 K7EMT4 169 aa8.95□□□□□ -0.98
CLIP3-201ENST00000360535 SLURP1P55000 103 aa8.95□□□□□ -0.98
CLIP3-201ENST00000360535 C9orf85Q96MD7 179 aa8.95□□□□□ -0.98
CLIP3-201ENST00000360535 K7EQG2 157 aa8.95□□□□□ -0.98
CLIP3-201ENST00000360535 ZNF22P17026 224 aaPredicted RBP8.95□□□□□ -0.98
CLIP3-201ENST00000360535 TCTEX1D4Q5JR98 221 aa8.95□□□□□ -0.98
CLIP3-201ENST00000360535 C20orf203Q8NBC4 194 aa8.95□□□□□ -0.98
CLIP3-201ENST00000360535 A0A0U1RRA0 63 aa8.95□□□□□ -0.98
CLIP3-201ENST00000360535 A8MWV9 139 aa8.95□□□□□ -0.98
CLIP3-201ENST00000360535 MT-ATP8P03928 68 aa8.95□□□□□ -0.98
CLIP3-201ENST00000360535 SS18L2Q9UHA2 77 aa8.95□□□□□ -0.98
CLIP3-201ENST00000360535 TRBV7-9A0A0J9YWB2 115 aa8.94□□□□□ -0.98
CLIP3-201ENST00000360535 RBMY1A1P0DJD3 496 aaKnown RBP8.94□□□□□ -0.98
CLIP3-201ENST00000360535 RBMY1CP0DJD4 496 aa8.94□□□□□ -0.98
CLIP3-201ENST00000360535 RBMY1FQ15415 496 aaKnown RBP8.94□□□□□ -0.98
CLIP3-201ENST00000360535 TNFRSF18Q9Y5U5 241 aa8.94□□□□□ -0.98
CLIP3-201ENST00000360535 IGLV4-3A0A075B6K6 122 aa8.94□□□□□ -0.98
CLIP3-201ENST00000360535 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms