RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 SYNJ2BPP57105 145 aa11.74□□□□□ -0.53
RTN3-205ENST00000356000 RNF182Q8N6D2 247 aa11.74□□□□□ -0.53
RTN3-205ENST00000356000 PKIGQ9Y2B9 76 aa11.74□□□□□ -0.53
RTN3-205ENST00000356000 MIAQ16674 131 aa11.74□□□□□ -0.53
RTN3-205ENST00000356000 DEFB109BQ30KR1 87 aa11.74□□□□□ -0.53
RTN3-205ENST00000356000 FASNP49327 2511 aaKnown RBP11.74□□□□□ -0.53
RTN3-205ENST00000356000 PSMB8P28062 276 aa11.73□□□□□ -0.53
RTN3-205ENST00000356000 MBD3L2Q8NHZ7 208 aaPredicted RBP11.73□□□□□ -0.53
RTN3-205ENST00000356000 IGHV1-69P01742 117 aa11.73□□□□□ -0.53
RTN3-205ENST00000356000 ZNF580Q9UK33 172 aa11.73□□□□□ -0.53
RTN3-205ENST00000356000 IGHV4OR15-8A0A075B7B6 117 aa11.73□□□□□ -0.53
RTN3-205ENST00000356000 A0A087WW49 117 aa11.73□□□□□ -0.53
RTN3-205ENST00000356000 BUB3O43684 328 aa11.73□□□□□ -0.53
RTN3-205ENST00000356000 FHL2Q14192 279 aa11.73□□□□□ -0.53
RTN3-205ENST00000356000 IGLV3-9A0A075B6K5 115 aa11.72□□□□□ -0.53
RTN3-205ENST00000356000 NDUFC2O95298 119 aa11.72□□□□□ -0.53
RTN3-205ENST00000356000 INAFM2P0DMQ5 153 aa11.72□□□□□ -0.53
RTN3-205ENST00000356000 C22orf24Q9Y442 160 aa11.72□□□□□ -0.53
RTN3-205ENST00000356000 MALRD1Q5VYJ5 2156 aa11.72□□□□□ -0.53
RTN3-205ENST00000356000 ZZEF1O43149 2961 aa11.72□□□□□ -0.53
RTN3-205ENST00000356000 IGHV1-46P01743 117 aa11.72□□□□□ -0.53
RTN3-205ENST00000356000 NPC2P61916 151 aa11.72□□□□□ -0.53
RTN3-205ENST00000356000 PRRC2AP48634 2157 aaKnown RBP11.71□□□□□ -0.53
RTN3-205ENST00000356000 GCN1Q92616 2671 aaKnown RBP11.71□□□□□ -0.53
RTN3-205ENST00000356000 COX7A2LO14548 114 aa11.71□□□□□ -0.53
RTN3-205ENST00000356000 VCYO14598 125 aa11.71□□□□□ -0.53
RTN3-205ENST00000356000 IGHV3-30-3P0DP02 117 aa11.71□□□□□ -0.53
RTN3-205ENST00000356000 EDN2P20800 178 aa11.71□□□□□ -0.53
RTN3-205ENST00000356000 ZNF415Q09FC8 603 aa11.71□□□□□ -0.53
RTN3-205ENST00000356000 CNEP1R1Q8N9A8 125 aa11.71□□□□□ -0.53
RTN3-205ENST00000356000 ADARB2-AS1A8MUL3 147 aa11.71□□□□□ -0.54
RTN3-205ENST00000356000 USP17L23D6RBM5 183 aa11.71□□□□□ -0.54
RTN3-205ENST00000356000 BEAN1Q3B7T3 259 aa11.71□□□□□ -0.54
RTN3-205ENST00000356000 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.71□□□□□ -0.54
RTN3-205ENST00000356000 PRIMA1Q86XR5 153 aa11.71□□□□□ -0.54
RTN3-205ENST00000356000 DMXL2Q8TDJ6 3036 aa11.7□□□□□ -0.54
RTN3-205ENST00000356000 DSPP15924 2871 aaKnown RBP11.7□□□□□ -0.54
RTN3-205ENST00000356000 IGHV1-3A0A0C4DH29 117 aa11.7□□□□□ -0.54
RTN3-205ENST00000356000 FAM222AQ5U5X8 452 aa11.7□□□□□ -0.54
RTN3-205ENST00000356000 Q6JHZ5 121 aa11.7□□□□□ -0.54
RTN3-205ENST00000356000 V9GYY9 64 aa11.7□□□□□ -0.54
RTN3-205ENST00000356000 BAALC-AS2P0C853 105 aa11.7□□□□□ -0.54
RTN3-205ENST00000356000 C9orf47Q6ZRZ4 202 aa11.7□□□□□ -0.54
RTN3-205ENST00000356000 DEFB104AQ8WTQ1 72 aa11.7□□□□□ -0.54
RTN3-205ENST00000356000 PHLDA3Q9Y5J5 127 aa11.7□□□□□ -0.54
RTN3-205ENST00000356000 M0R1W7 72 aa11.69□□□□□ -0.54
RTN3-205ENST00000356000 LINC01561Q8N1V8 128 aa11.69□□□□□ -0.54
RTN3-205ENST00000356000 FANCD2OSQ96PS1 177 aa11.69□□□□□ -0.54
RTN3-205ENST00000356000 CFAP47Q6ZTR5 3102 aa11.69□□□□□ -0.54
RTN3-205ENST00000356000 IGLV11-55A0A075B6I3 123 aa11.69□□□□□ -0.54
RTN3-205ENST00000356000 TRAV12-2A0A075B6T6 113 aa11.69□□□□□ -0.54
RTN3-205ENST00000356000 OPRPNQ99935 248 aaPredicted RBP11.69□□□□□ -0.54
RTN3-205ENST00000356000 ASH1LQ9NR48 2969 aaKnown RBP11.68□□□□□ -0.54
RTN3-205ENST00000356000 TRAV12-3A0A0B4J271 114 aa11.68□□□□□ -0.54
RTN3-205ENST00000356000 PRR9Q5T870 116 aa11.68□□□□□ -0.54
RTN3-205ENST00000356000 A0A0J9YXV3 536 aa11.68□□□□□ -0.54
RTN3-205ENST00000356000 IGHV1-8P0DP01 117 aa11.68□□□□□ -0.54
RTN3-205ENST00000356000 LINC00315P59091 139 aa11.68□□□□□ -0.54
RTN3-205ENST00000356000 C9orf139Q6ZV77 190 aa11.68□□□□□ -0.54
RTN3-205ENST00000356000 SLC25A15Q9Y619 301 aa11.68□□□□□ -0.54
RTN3-205ENST00000356000 MED14OSP0DP75 135 aa11.67□□□□□ -0.54
RTN3-205ENST00000356000 S100A4P26447 101 aaKnown RBP11.67□□□□□ -0.54
RTN3-205ENST00000356000 IGFL3Q6UXB1 125 aa11.67□□□□□ -0.54
RTN3-205ENST00000356000 MRPL53Q96EL3 112 aaKnown RBP11.67□□□□□ -0.54
RTN3-205ENST00000356000 KIF25-AS1Q9Y6Z4 181 aa11.67□□□□□ -0.54
RTN3-205ENST00000356000 RNF5Q99942 180 aa11.67□□□□□ -0.54
RTN3-205ENST00000356000 SERP1Q9Y6X1 66 aa11.67□□□□□ -0.54
RTN3-205ENST00000356000 NACAE9PAV3 2078 aa11.67□□□□□ -0.54
RTN3-205ENST00000356000 A0A087WVE0 104 aa11.66□□□□□ -0.54
RTN3-205ENST00000356000 AHCTF1Q8WYP5 2266 aa11.66□□□□□ -0.54
RTN3-205ENST00000356000 IGKV3D-7A0A0C4DH55 119 aa11.66□□□□□ -0.54
RTN3-205ENST00000356000 TRBV27A0A0K0K1C4 114 aa11.66□□□□□ -0.54
RTN3-205ENST00000356000 C16orf95Q9H693 158 aa11.66□□□□□ -0.54
RTN3-205ENST00000356000 ZNF462Q96JM2 2506 aa11.65□□□□□ -0.54
RTN3-205ENST00000356000 MYO18BQ8IUG5 2567 aa11.65□□□□□ -0.54
RTN3-205ENST00000356000 CTSGP08311 255 aa11.65□□□□□ -0.54
RTN3-205ENST00000356000 NDUFA12Q9UI09 145 aa11.65□□□□□ -0.54
RTN3-205ENST00000356000 FAM236DA0A1B0GTK5 79 aa11.65□□□□□ -0.54
RTN3-205ENST00000356000 FAM236CP0DP71 79 aa11.65□□□□□ -0.54
RTN3-205ENST00000356000 MDS2Q8NDY4 140 aa11.65□□□□□ -0.54
RTN3-205ENST00000356000 FAM223BA6NKX1 122 aa11.64□□□□□ -0.55
RTN3-205ENST00000356000 CADP27708 2225 aa11.64□□□□□ -0.55
RTN3-205ENST00000356000 MED13Q9UHV7 2174 aa11.64□□□□□ -0.55
RTN3-205ENST00000356000 HELZ2Q9BYK8 2649 aaKnown RBP11.64□□□□□ -0.55
RTN3-205ENST00000356000 IGLV1-47P01700 117 aa11.64□□□□□ -0.55
RTN3-205ENST00000356000 LENEPQ9Y5L5 61 aa11.64□□□□□ -0.55
RTN3-205ENST00000356000 ARHGAP32A7KAX9 2087 aa11.63□□□□□ -0.55
RTN3-205ENST00000356000 IGHV3OR16-8A0A075B7F1 116 aa11.63□□□□□ -0.55
RTN3-205ENST00000356000 NDUFB3O43676 98 aa11.63□□□□□ -0.55
RTN3-205ENST00000356000 IGHV3-23P01764 117 aa11.63□□□□□ -0.55
RTN3-205ENST00000356000 LOXP28300 417 aaPredicted RBP11.63□□□□□ -0.55
RTN3-205ENST00000356000 FAM223AQ8IWN6 122 aa11.63□□□□□ -0.55
RTN3-205ENST00000356000 TMEM243Q9BU79 118 aa11.63□□□□□ -0.55
RTN3-205ENST00000356000 M0R1B8 84 aa11.63□□□□□ -0.55
RTN3-205ENST00000356000 TIMM17BO60830 172 aa11.63□□□□□ -0.55
RTN3-205ENST00000356000 PLCE1Q9P212 2302 aa11.62□□□□□ -0.55
RTN3-205ENST00000356000 IGHV1-58A0A0C4DH39 117 aa11.62□□□□□ -0.55
RTN3-205ENST00000356000 NXPH4O95158 308 aa11.62□□□□□ -0.55
RTN3-205ENST00000356000 SUMO4Q6EEV6 95 aa11.62□□□□□ -0.55
RTN3-205ENST00000356000 BUB1B-PAK6H3BSN5 160 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 124 ms