RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 LENEPQ9Y5L5 61 aa6.19□□□□□ -1.42
ATG4A-201ENST00000343524 APCP25054 2843 aa6.18□□□□□ -1.42
ATG4A-201ENST00000343524 TMEM223A0PJW6 202 aa6.18□□□□□ -1.42
ATG4A-201ENST00000343524 F5H768 121 aa6.18□□□□□ -1.42
ATG4A-201ENST00000343524 OVOL1O14753 267 aa6.18□□□□□ -1.42
ATG4A-201ENST00000343524 IGHV1-69P01742 117 aa6.18□□□□□ -1.42
ATG4A-201ENST00000343524 IGHV1-46P01743 117 aa6.18□□□□□ -1.42
ATG4A-201ENST00000343524 CRYGDP07320 174 aa6.18□□□□□ -1.42
ATG4A-201ENST00000343524 APELAP0DMC3 54 aa6.18□□□□□ -1.42
ATG4A-201ENST00000343524 GNLYP22749 145 aa6.18□□□□□ -1.42
ATG4A-201ENST00000343524 ZNF876PQ49A33 203 aa6.18□□□□□ -1.42
ATG4A-201ENST00000343524 MUSTN1Q8IVN3 82 aa6.18□□□□□ -1.42
ATG4A-201ENST00000343524 DYNAPQ8N1N2 210 aa6.18□□□□□ -1.42
ATG4A-201ENST00000343524 DEFB127Q9H1M4 99 aa6.18□□□□□ -1.42
ATG4A-201ENST00000343524 PEMTQ9UBM1 199 aa6.18□□□□□ -1.42
ATG4A-201ENST00000343524 CTSZQ9UBR2 303 aa6.18□□□□□ -1.42
ATG4A-201ENST00000343524 SLC25A15Q9Y619 301 aa6.18□□□□□ -1.42
ATG4A-201ENST00000343524 CNTRLQ7Z7A1 2325 aa6.18□□□□□ -1.42
ATG4A-201ENST00000343524 ANKHD1Q8IWZ3 2542 aaKnown RBP6.17□□□□□ -1.42
ATG4A-201ENST00000343524 TSPEAR-AS2P59090 65 aa6.17□□□□□ -1.42
ATG4A-201ENST00000343524 GFRALQ6UXV0 394 aa6.17□□□□□ -1.42
ATG4A-201ENST00000343524 TP53TG1Q9Y2A0 90 aa6.17□□□□□ -1.42
ATG4A-201ENST00000343524 SDK2Q58EX2 2172 aa6.17□□□□□ -1.42
ATG4A-201ENST00000343524 IGIPA6NJ69 53 aa6.17□□□□□ -1.42
ATG4A-201ENST00000343524 IGHV1-8P0DP01 117 aa6.17□□□□□ -1.42
ATG4A-201ENST00000343524 C5orf38Q86SI9 138 aa6.17□□□□□ -1.42
ATG4A-201ENST00000343524 AGPAT4-IT1Q9H0P7 198 aa6.17□□□□□ -1.42
ATG4A-201ENST00000343524 BEX4Q9NWD9 120 aaPredicted RBP6.17□□□□□ -1.42
ATG4A-201ENST00000343524 PRR14LQ5THK1 2151 aa6.17□□□□□ -1.42
ATG4A-201ENST00000343524 AKAP9Q99996 3911 aa6.16□□□□□ -1.42
ATG4A-201ENST00000343524 IGHV1-3A0A0C4DH29 117 aa6.16□□□□□ -1.42
ATG4A-201ENST00000343524 M0R1B8 84 aa6.16□□□□□ -1.42
ATG4A-201ENST00000343524 INAFM2P0DMQ5 153 aa6.16□□□□□ -1.42
ATG4A-201ENST00000343524 DUX3Q96PT4 197 aa6.16□□□□□ -1.42
ATG4A-201ENST00000343524 IGHV3-72A0A0B4J1Y9 119 aa6.15□□□□□ -1.42
ATG4A-201ENST00000343524 HIST1H4AP62805 103 aaKnown RBP6.15□□□□□ -1.42
ATG4A-201ENST00000343524 MSMPQ1L6U9 139 aa6.15□□□□□ -1.42
ATG4A-201ENST00000343524 SDIM1Q6ZPB5 146 aa6.15□□□□□ -1.42
ATG4A-201ENST00000343524 DAND5Q8N907 189 aa6.15□□□□□ -1.42
ATG4A-201ENST00000343524 KIR2DL5BQ8NHK3 375 aa6.15□□□□□ -1.42
ATG4A-201ENST00000343524 NIPBLQ6KC79 2804 aaeCLIP6.15□□□□□ -1.42
ATG4A-201ENST00000343524 DSCAMO60469 2012 aa6.15□□□□□ -1.42
ATG4A-201ENST00000343524 HIVEP3Q5T1R4 2406 aa6.15□□□□□ -1.42
ATG4A-201ENST00000343524 COL27A1Q8IZC6 1860 aaPredicted RBP6.15□□□□□ -1.43
ATG4A-201ENST00000343524 IGLV11-55A0A075B6I3 123 aa6.15□□□□□ -1.43
ATG4A-201ENST00000343524 VCYO14598 125 aa6.15□□□□□ -1.43
ATG4A-201ENST00000343524 EIF4EBP3O60516 100 aaPredicted RBP6.15□□□□□ -1.43
ATG4A-201ENST00000343524 ELANEP08246 267 aa6.15□□□□□ -1.43
ATG4A-201ENST00000343524 MGPP08493 103 aa6.15□□□□□ -1.43
ATG4A-201ENST00000343524 CNTFRP26992 372 aa6.15□□□□□ -1.43
ATG4A-201ENST00000343524 C9orf47Q6ZRZ4 202 aa6.15□□□□□ -1.43
ATG4A-201ENST00000343524 PHLDA3Q9Y5J5 127 aa6.15□□□□□ -1.43
ATG4A-201ENST00000343524 NDUFC2-KCTD14E9PQ53 114 aa6.14□□□□□ -1.43
ATG4A-201ENST00000343524 S100A4P26447 101 aaKnown RBP6.14□□□□□ -1.43
ATG4A-201ENST00000343524 KLRB1Q12918 225 aa6.14□□□□□ -1.43
ATG4A-201ENST00000343524 C14orf178Q8N769 122 aaPredicted RBP6.14□□□□□ -1.43
ATG4A-201ENST00000343524 COPS9Q8WXC6 57 aa6.14□□□□□ -1.43
ATG4A-201ENST00000343524 DUX5Q96PT3 197 aa6.14□□□□□ -1.43
ATG4A-201ENST00000343524 C11orf21Q9P2W6 132 aa6.14□□□□□ -1.43
ATG4A-201ENST00000343524 SMAD5-AS1Q9Y6J3 95 aa6.14□□□□□ -1.43
ATG4A-201ENST00000343524 IGHV4OR15-8A0A075B7B6 117 aa6.13□□□□□ -1.43
ATG4A-201ENST00000343524 A0A087WW49 117 aa6.13□□□□□ -1.43
ATG4A-201ENST00000343524 TRAV21A0A0B4J279 112 aa6.13□□□□□ -1.43
ATG4A-201ENST00000343524 A0A0J9YXY3 114 aa6.13□□□□□ -1.43
ATG4A-201ENST00000343524 TSHBP01222 138 aa6.13□□□□□ -1.43
ATG4A-201ENST00000343524 PRB4P10163 310 aaPredicted RBP6.13□□□□□ -1.43
ATG4A-201ENST00000343524 UBE2E1P51965 193 aa6.13□□□□□ -1.43
ATG4A-201ENST00000343524 CCL8P80075 99 aa6.13□□□□□ -1.43
ATG4A-201ENST00000343524 RPL18AQ02543 176 aaKnown RBP6.13□□□□□ -1.43
ATG4A-201ENST00000343524 RHOHQ15669 191 aa6.13□□□□□ -1.43
ATG4A-201ENST00000343524 MIAQ16674 131 aa6.13□□□□□ -1.43
ATG4A-201ENST00000343524 RPL39LQ96EH5 51 aaKnown RBP6.13□□□□□ -1.43
ATG4A-201ENST00000343524 DPH3Q96FX2 82 aa6.13□□□□□ -1.43
ATG4A-201ENST00000343524 C2orf48Q96LS8 159 aa6.13□□□□□ -1.43
ATG4A-201ENST00000343524 KAAG1Q9UBP8 84 aa6.13□□□□□ -1.43
ATG4A-201ENST00000343524 BUB1B-PAK6H3BSN5 160 aa6.13□□□□□ -1.43
ATG4A-201ENST00000343524 IGLV1-47P01700 117 aa6.13□□□□□ -1.43
ATG4A-201ENST00000343524 ZNF22P17026 224 aaPredicted RBP6.13□□□□□ -1.43
ATG4A-201ENST00000343524 LOXP28300 417 aaPredicted RBP6.13□□□□□ -1.43
ATG4A-201ENST00000343524 FAM222AQ5U5X8 452 aa6.13□□□□□ -1.43
ATG4A-201ENST00000343524 CEMP1Q6PRD7 247 aaPredicted RBP6.13□□□□□ -1.43
ATG4A-201ENST00000343524 RNF182Q8N6D2 247 aa6.13□□□□□ -1.43
ATG4A-201ENST00000343524 DCANP1Q8TF63 244 aa6.13□□□□□ -1.43
ATG4A-201ENST00000343524 NBR2O15453 112 aa6.12□□□□□ -1.43
ATG4A-201ENST00000343524 TIMM17BO60830 172 aa6.12□□□□□ -1.43
ATG4A-201ENST00000343524 NSUN5P1Q3KNT7 163 aa6.12□□□□□ -1.43
ATG4A-201ENST00000343524 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.12□□□□□ -1.43
ATG4A-201ENST00000343524 SERP2Q8N6R1 65 aa6.12□□□□□ -1.43
ATG4A-201ENST00000343524 C9orf106Q8NAJ2 232 aa6.12□□□□□ -1.43
ATG4A-201ENST00000343524 NUP37Q8NFH4 326 aa6.12□□□□□ -1.43
ATG4A-201ENST00000343524 SPATA3Q8NHX4 192 aa6.12□□□□□ -1.43
ATG4A-201ENST00000343524 KLK5Q9Y337 293 aaPredicted RBP6.12□□□□□ -1.43
ATG4A-201ENST00000343524 TRAV8-3A0A0A6YYJ7 113 aa6.11□□□□□ -1.43
ATG4A-201ENST00000343524 PRAC2D3DTV9 90 aa6.11□□□□□ -1.43
ATG4A-201ENST00000343524 F8W735 103 aaPredicted RBP6.11□□□□□ -1.43
ATG4A-201ENST00000343524 NXPH4O95158 308 aa6.11□□□□□ -1.43
ATG4A-201ENST00000343524 MALP21145 153 aa6.11□□□□□ -1.43
ATG4A-201ENST00000343524 TMEM61Q8N0U2 210 aa6.11□□□□□ -1.43
ATG4A-201ENST00000343524 TIMM21Q9BVV7 248 aa6.11□□□□□ -1.43
ATG4A-201ENST00000343524 DOCK10Q96BY6 2186 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms