RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 ASPHD1Q5U4P2 390 aa13.8□□□□□ -0.2
SMAD4-201ENST00000342988 FAM222AQ5U5X8 452 aa13.8□□□□□ -0.2
SMAD4-201ENST00000342988 UFSP1Q6NVU6 142 aa13.8□□□□□ -0.2
SMAD4-201ENST00000342988 RPL39LQ96EH5 51 aaKnown RBP13.8□□□□□ -0.2
SMAD4-201ENST00000342988 E9PLD3 99 aa13.8□□□□□ -0.2
SMAD4-201ENST00000342988 COL5A1P20908 1838 aaPredicted RBP13.79□□□□□ -0.2
SMAD4-201ENST00000342988 IGKV1-6A0A0C4DH72 117 aa13.79□□□□□ -0.2
SMAD4-201ENST00000342988 TIMM17BO60830 172 aa13.79□□□□□ -0.2
SMAD4-201ENST00000342988 MRPS36P82909 103 aaKnown RBP13.79□□□□□ -0.2
SMAD4-201ENST00000342988 WFDC2Q14508 124 aa13.79□□□□□ -0.2
SMAD4-201ENST00000342988 ACANP16112 2415 aa13.79□□□□□ -0.2
SMAD4-201ENST00000342988 SP5Q6BEB4 398 aaPredicted RBP13.79□□□□□ -0.2
SMAD4-201ENST00000342988 ADCYAP1P18509 176 aa13.79□□□□□ -0.2
SMAD4-201ENST00000342988 SDIM1Q6ZPB5 146 aa13.79□□□□□ -0.2
SMAD4-201ENST00000342988 NPBQ8NG41 125 aa13.79□□□□□ -0.2
SMAD4-201ENST00000342988 MLANAQ16655 118 aa13.78□□□□□ -0.2
SMAD4-201ENST00000342988 C10orf91Q5T1B1 145 aa13.78□□□□□ -0.2
SMAD4-201ENST00000342988 MIR7-3HGQ8N6C7 128 aa13.78□□□□□ -0.2
SMAD4-201ENST00000342988 IGHV2-5P01817 119 aa13.78□□□□□ -0.2
SMAD4-201ENST00000342988 DAND5Q8N907 189 aa13.78□□□□□ -0.2
SMAD4-201ENST00000342988 MIAQ16674 131 aa13.78□□□□□ -0.2
SMAD4-201ENST00000342988 MED14OSP0DP75 135 aa13.77□□□□□ -0.2
SMAD4-201ENST00000342988 UBE2D3P61077 147 aa13.77□□□□□ -0.2
SMAD4-201ENST00000342988 ZNF491Q8N8L2 437 aa13.77□□□□□ -0.2
SMAD4-201ENST00000342988 QRFPP83859 136 aa13.77□□□□□ -0.21
SMAD4-201ENST00000342988 UNQ6494/PRO21346Q6UXR6 183 aa13.77□□□□□ -0.21
SMAD4-201ENST00000342988 CD59P13987 128 aa13.76□□□□□ -0.21
SMAD4-201ENST00000342988 FHL1Q13642 323 aa13.76□□□□□ -0.21
SMAD4-201ENST00000342988 IMUPQ9GZP8 106 aa13.76□□□□□ -0.21
SMAD4-201ENST00000342988 F8P00451 2351 aa13.75□□□□□ -0.21
SMAD4-201ENST00000342988 Q6ZVQ6 151 aa13.75□□□□□ -0.21
SMAD4-201ENST00000342988 UBE2D2P62837 147 aa13.75□□□□□ -0.21
SMAD4-201ENST00000342988 ENHOQ6UWT2 76 aa13.75□□□□□ -0.21
SMAD4-201ENST00000342988 NDUFA7O95182 113 aa13.74□□□□□ -0.21
SMAD4-201ENST00000342988 LOXP28300 417 aaPredicted RBP13.74□□□□□ -0.21
SMAD4-201ENST00000342988 FAM120AOSQ5T036 256 aa13.74□□□□□ -0.21
SMAD4-201ENST00000342988 PINLYPA6NC86 204 aa13.74□□□□□ -0.21
SMAD4-201ENST00000342988 TMEM263Q8WUH6 116 aaKnown RBP13.74□□□□□ -0.21
SMAD4-201ENST00000342988 Q0VFX4 171 aa13.74□□□□□ -0.21
SMAD4-201ENST00000342988 LRCOL1A6NCL2 159 aa13.73□□□□□ -0.21
SMAD4-201ENST00000342988 IGLC6P0CF74 106 aa13.73□□□□□ -0.21
SMAD4-201ENST00000342988 DEFB112Q30KQ8 113 aa13.73□□□□□ -0.21
SMAD4-201ENST00000342988 Q6ZRM9 215 aa13.73□□□□□ -0.21
SMAD4-201ENST00000342988 KLK12Q9UKR0 248 aa13.73□□□□□ -0.21
SMAD4-201ENST00000342988 A0A087WZ39 114 aa13.73□□□□□ -0.21
SMAD4-201ENST00000342988 Q8N9W7 124 aa13.73□□□□□ -0.21
SMAD4-201ENST00000342988 TCL1BO95988 128 aa13.72□□□□□ -0.21
SMAD4-201ENST00000342988 H7C423 109 aa13.72□□□□□ -0.21
SMAD4-201ENST00000342988 HIGD2AQ9BW72 106 aa13.72□□□□□ -0.21
SMAD4-201ENST00000342988 LY6HO94772 140 aa13.71□□□□□ -0.21
SMAD4-201ENST00000342988 LINC00205P59089 165 aa13.71□□□□□ -0.21
SMAD4-201ENST00000342988 A0A0G2JRQ6 117 aa13.71□□□□□ -0.22
SMAD4-201ENST00000342988 NDUFA11Q86Y39 141 aa13.71□□□□□ -0.22
SMAD4-201ENST00000342988 A0A0J9YWU9 116 aa13.7□□□□□ -0.22
SMAD4-201ENST00000342988 CTSGP08311 255 aa13.7□□□□□ -0.22
SMAD4-201ENST00000342988 CSDC2Q9Y534 153 aaKnown RBP13.7□□□□□ -0.22
SMAD4-201ENST00000342988 CACNA1AO00555 2505 aa13.69□□□□□ -0.22
SMAD4-201ENST00000342988 FLG2Q5D862 2391 aaPredicted RBP13.69□□□□□ -0.22
SMAD4-201ENST00000342988 FXYD2P54710 66 aa13.69□□□□□ -0.22
SMAD4-201ENST00000342988 WT1-ASQ06250 92 aa13.69□□□□□ -0.22
SMAD4-201ENST00000342988 MDFICQ9P1T7 246 aa13.68□□□□□ -0.22
SMAD4-201ENST00000342988 C17orf58Q2M2W7 97 aa13.68□□□□□ -0.22
SMAD4-201ENST00000342988 PTH2Q96A98 100 aa13.68□□□□□ -0.22
SMAD4-201ENST00000342988 ANKHD1Q8IWZ3 2542 aaKnown RBP13.68□□□□□ -0.22
SMAD4-201ENST00000342988 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.68□□□□□ -0.22
SMAD4-201ENST00000342988 APRG1Q8IVJ8 170 aa13.68□□□□□ -0.22
SMAD4-201ENST00000342988 ZNF524Q96C55 264 aa13.68□□□□□ -0.22
SMAD4-201ENST00000342988 IGKV1D-37A0A075B6S9 117 aa13.67□□□□□ -0.22
SMAD4-201ENST00000342988 A0A087WV48 116 aa13.67□□□□□ -0.22
SMAD4-201ENST00000342988 K7EN84 100 aa13.67□□□□□ -0.22
SMAD4-201ENST00000342988 MAPK1IP1LQ8NDC0 245 aa13.67□□□□□ -0.22
SMAD4-201ENST00000342988 TRBV10-1A0A0K0K1A3 114 aa13.67□□□□□ -0.22
SMAD4-201ENST00000342988 INSL3P51460 131 aa13.67□□□□□ -0.22
SMAD4-201ENST00000342988 SPATA12Q7Z6I5 190 aa13.66□□□□□ -0.22
SMAD4-201ENST00000342988 Q8NFD4 153 aa13.66□□□□□ -0.22
SMAD4-201ENST00000342988 A0A0J9YXV3 536 aa13.66□□□□□ -0.22
SMAD4-201ENST00000342988 FAM19A1Q7Z5A9 133 aa13.65□□□□□ -0.22
SMAD4-201ENST00000342988 DHRS4-AS1Q9P1J3 65 aa13.65□□□□□ -0.22
SMAD4-201ENST00000342988 SMAD5-AS1Q9Y6J3 95 aa13.65□□□□□ -0.22
SMAD4-201ENST00000342988 C2CD3Q4AC94 2353 aa13.65□□□□□ -0.22
SMAD4-201ENST00000342988 ZFYVE26Q68DK2 2539 aa13.65□□□□□ -0.22
SMAD4-201ENST00000342988 TRBV27A0A0K0K1C4 114 aa13.65□□□□□ -0.22
SMAD4-201ENST00000342988 CCKP06307 115 aa13.65□□□□□ -0.23
SMAD4-201ENST00000342988 WFDC10AQ9H1F0 79 aa13.65□□□□□ -0.23
SMAD4-201ENST00000342988 IGKV2-24A0A0C4DH68 120 aa13.64□□□□□ -0.23
SMAD4-201ENST00000342988 AGPAT4-IT1Q9H0P7 198 aa13.64□□□□□ -0.23
SMAD4-201ENST00000342988 Q6ZS92 163 aa13.64□□□□□ -0.23
SMAD4-201ENST00000342988 SPRY4Q9C004 299 aa13.64□□□□□ -0.23
SMAD4-201ENST00000342988 IGHV4-30-2A0A087WSY4 118 aa13.64□□□□□ -0.23
SMAD4-201ENST00000342988 SLURP1P55000 103 aa13.63□□□□□ -0.23
SMAD4-201ENST00000342988 RPL39P62891 51 aaKnown RBP13.63□□□□□ -0.23
SMAD4-201ENST00000342988 SERTAD4-AS1Q5TG53 156 aa13.63□□□□□ -0.23
SMAD4-201ENST00000342988 ODF3L1Q8IXM7 274 aa13.63□□□□□ -0.23
SMAD4-201ENST00000342988 CRYGDP07320 174 aa13.63□□□□□ -0.23
SMAD4-201ENST00000342988 DEFB136Q30KP8 78 aa13.63□□□□□ -0.23
SMAD4-201ENST00000342988 ZNRD1Q9P1U0 126 aa13.63□□□□□ -0.23
SMAD4-201ENST00000342988 C4orf3Q8WVX3 66 aa13.63□□□□□ -0.23
SMAD4-201ENST00000342988 PRO0255Q9UI72 69 aa13.62□□□□□ -0.23
SMAD4-201ENST00000342988 TMEM223A0PJW6 202 aa13.62□□□□□ -0.23
SMAD4-201ENST00000342988 LYPD6BQ8NI32 183 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms