RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 SPXQ9BT56 116 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 LAMTOR2Q9Y2Q5 125 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 X6R8D5 127 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 NBEAL2Q6ZNJ1 2754 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 CMYA5Q8N3K9 4069 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 M0QY20 66 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 DEFB4AO15263 64 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 TCAPO15273 167 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 IGHV3-53P01767 116 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 PRB2P02812 416 aaPredicted RBP2.97□□□□□ -1.93
MCF2-201ENST00000338585 KRTDAPP60985 99 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 SUMO2P61956 95 aaKnown RBP2.97□□□□□ -1.93
MCF2-201ENST00000338585 C16orf74Q96GX8 76 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 SMIM2Q9BVW6 85 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 NOTCH1P46531 2555 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 KIR2DL5BA0A0G2JN68 375 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 KIR2DL5BA0A0G2JPC4 375 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 GAGE12BA1L429 117 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 A8MWV9 139 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 RS1O15537 224 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 GAGE7O76087 117 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 C3orf79P0CE67 100 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 GAGE12FP0CL80 117 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 GAGE12GP0CL81 117 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 GAGE12IP0CL82 117 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 SMIM6P0DI80 62 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 APOC4P55056 127 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 JOSD1Q15040 202 aaPredicted RBP2.96□□□□□ -1.94
MCF2-201ENST00000338585 SPATA12Q7Z6I5 190 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 KIR2DL5AQ8N109 375 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 Q8N8P6 123 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 KIR2DL5BQ8NHK3 375 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 PTH2Q96A98 100 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 ZNF479Q96JC4 524 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 NXT2Q9NPJ8 142 aaKnown RBP2.96□□□□□ -1.94
MCF2-201ENST00000338585 LINC01546A6NGU7 62 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 DAZ2Q13117 558 aaKnown RBP2.96□□□□□ -1.94
MCF2-201ENST00000338585 PIK3CD-AS1Q5SR53 167 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 SAMD5Q5TGI4 173 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 Q8N976 141 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 RETNQ9HD89 108 aa2.96□□□□□ -1.94
MCF2-201ENST00000338585 SDHAF1A6NFY7 115 aa2.95□□□□□ -1.94
MCF2-201ENST00000338585 LEPROTL1O95214 131 aa2.95□□□□□ -1.94
MCF2-201ENST00000338585 SCGB1D1O95968 90 aa2.95□□□□□ -1.94
MCF2-201ENST00000338585 OR4C5Q8NGB2 326 aa2.95□□□□□ -1.94
MCF2-201ENST00000338585 OR11H2Q8NH07 326 aa2.95□□□□□ -1.94
MCF2-201ENST00000338585 C20orf78Q9BR46 151 aa2.95□□□□□ -1.94
MCF2-201ENST00000338585 TMEM70Q9BUB7 260 aa2.95□□□□□ -1.94
MCF2-201ENST00000338585 ST20Q9HBF5 79 aa2.95□□□□□ -1.94
MCF2-201ENST00000338585 NIT2Q9NQR4 276 aa2.95□□□□□ -1.94
MCF2-201ENST00000338585 TRGV2A0A075B6R0 118 aa2.95□□□□□ -1.94
MCF2-201ENST00000338585 IGHV4-28A0A0C4DH34 117 aa2.95□□□□□ -1.94
MCF2-201ENST00000338585 TRBV6-5A0A0K0K1A5 114 aa2.95□□□□□ -1.94
MCF2-201ENST00000338585 H0Y8G0 127 aa2.95□□□□□ -1.94
MCF2-201ENST00000338585 HBDP02042 147 aa2.95□□□□□ -1.94
MCF2-201ENST00000338585 DEFB130BP0DP73 79 aa2.95□□□□□ -1.94
MCF2-201ENST00000338585 DEFB130AP0DP74 79 aa2.95□□□□□ -1.94
MCF2-201ENST00000338585 BTF3P20290 206 aaKnown RBP2.95□□□□□ -1.94
MCF2-201ENST00000338585 POLR2KP53803 58 aaKnown RBP2.95□□□□□ -1.94
MCF2-201ENST00000338585 RIPPLY3P57055 190 aa2.95□□□□□ -1.94
MCF2-201ENST00000338585 LGALS9BQ3B8N2 356 aa2.95□□□□□ -1.94
MCF2-201ENST00000338585 LURAP1LQ8IV03 231 aa2.95□□□□□ -1.94
MCF2-201ENST00000338585 C18orf15Q96N68 181 aa2.95□□□□□ -1.94
MCF2-201ENST00000338585 OVOL2Q9BRP0 275 aa2.95□□□□□ -1.94
MCF2-201ENST00000338585 ANK2Q01484 3957 aa2.94□□□□□ -1.94
MCF2-201ENST00000338585 MGAM2Q2M2H8 2515 aa2.94□□□□□ -1.94
MCF2-201ENST00000338585 TRAV4A0A0B4J268 109 aa2.94□□□□□ -1.94
MCF2-201ENST00000338585 RHODO00212 210 aa2.94□□□□□ -1.94
MCF2-201ENST00000338585 PPP1R17O96001 155 aa2.94□□□□□ -1.94
MCF2-201ENST00000338585 FCER1GP30273 86 aa2.94□□□□□ -1.94
MCF2-201ENST00000338585 LAGE3Q14657 143 aa2.94□□□□□ -1.94
MCF2-201ENST00000338585 Q8NAQ8 132 aa2.94□□□□□ -1.94
MCF2-201ENST00000338585 RNF183Q96D59 192 aa2.94□□□□□ -1.94
MCF2-201ENST00000338585 TRBV27A0A0K0K1C4 114 aa2.94□□□□□ -1.94
MCF2-201ENST00000338585 SMIM9A6NGZ8 99 aa2.94□□□□□ -1.94
MCF2-201ENST00000338585 SYS1-DBNDD2H3BUS1 97 aa2.94□□□□□ -1.94
MCF2-201ENST00000338585 FAM222AQ5U5X8 452 aa2.94□□□□□ -1.94
MCF2-201ENST00000338585 ZFP2Q6ZN57 461 aa2.94□□□□□ -1.94
MCF2-201ENST00000338585 ATOH7Q8N100 152 aa2.94□□□□□ -1.94
MCF2-201ENST00000338585 NEXN-AS1Q8NBZ9 246 aa2.94□□□□□ -1.94
MCF2-201ENST00000338585 PMCHL2Q9BQD1 86 aa2.94□□□□□ -1.94
MCF2-201ENST00000338585 NDUFAF3Q9BU61 184 aa2.94□□□□□ -1.94
MCF2-201ENST00000338585 IGHV3-38A0A0C4DH36 116 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 LOC100131303A0A0U1RQF7 123 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 A8MZ25 164 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 H7C1H1 209 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 VCYO14598 125 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 NUDT3O95989 172 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 TSHBP01222 138 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 RPL32P62910 135 aaKnown RBP2.93□□□□□ -1.94
MCF2-201ENST00000338585 LINC00612Q8N6U2 182 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 SLC25A29Q8N8R3 303 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 PHLDA1Q8WV24 401 aaPredicted RBP2.93□□□□□ -1.94
MCF2-201ENST00000338585 EDA2RQ9HAV5 297 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 HSPB8Q9UJY1 196 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 CELA1Q9UNI1 258 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 TNFRSF18Q9Y5U5 241 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 NBEAL1Q6ZS30 2694 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 PCP4L1A6NKN8 68 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 K7EIL1 84 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms