RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 PPP1R17O96001 155 aa11.17□□□□□ -0.62
LIMS1-202ENST00000338045 PMCHL1Q16048 86 aa11.17□□□□□ -0.62
LIMS1-202ENST00000338045 SUMO4Q6EEV6 95 aa11.17□□□□□ -0.62
LIMS1-202ENST00000338045 C20orf78Q9BR46 151 aa11.17□□□□□ -0.62
LIMS1-202ENST00000338045 TNFRSF18Q9Y5U5 241 aa11.17□□□□□ -0.62
LIMS1-202ENST00000338045 A8MWV9 139 aa11.17□□□□□ -0.62
LIMS1-202ENST00000338045 Q8N8P6 123 aa11.17□□□□□ -0.62
LIMS1-202ENST00000338045 STAB1Q9NY15 2570 aa11.16□□□□□ -0.62
LIMS1-202ENST00000338045 FAM74A4Q5TZK3 123 aa11.16□□□□□ -0.62
LIMS1-202ENST00000338045 UFSP1Q6NVU6 142 aa11.16□□□□□ -0.62
LIMS1-202ENST00000338045 PET117Q6UWS5 81 aa11.16□□□□□ -0.62
LIMS1-202ENST00000338045 RPL39LQ96EH5 51 aaKnown RBP11.16□□□□□ -0.62
LIMS1-202ENST00000338045 COX11Q9Y6N1 276 aa11.16□□□□□ -0.62
LIMS1-202ENST00000338045 A0A096LNJ9 63 aa11.15□□□□□ -0.62
LIMS1-202ENST00000338045 SUMO2P61956 95 aaKnown RBP11.15□□□□□ -0.62
LIMS1-202ENST00000338045 KIR2DL5BQ8NHK3 375 aa11.15□□□□□ -0.62
LIMS1-202ENST00000338045 C16orf74Q96GX8 76 aa11.15□□□□□ -0.62
LIMS1-202ENST00000338045 PLAC8L1A1L4L8 177 aa11.15□□□□□ -0.63
LIMS1-202ENST00000338045 OXLD1Q5BKU9 147 aa11.15□□□□□ -0.63
LIMS1-202ENST00000338045 SMIM2Q9BVW6 85 aa11.15□□□□□ -0.63
LIMS1-202ENST00000338045 EDA2RQ9HAV5 297 aa11.15□□□□□ -0.63
LIMS1-202ENST00000338045 F5H697 171 aa11.14□□□□□ -0.63
LIMS1-202ENST00000338045 M0QY20 66 aa11.14□□□□□ -0.63
LIMS1-202ENST00000338045 LEPROTL1O95214 131 aa11.14□□□□□ -0.63
LIMS1-202ENST00000338045 EGFEM1PQ0D2K5 195 aa11.14□□□□□ -0.63
LIMS1-202ENST00000338045 DAZ2Q13117 558 aaKnown RBP11.14□□□□□ -0.63
LIMS1-202ENST00000338045 MRPL16Q9NX20 251 aaKnown RBP11.14□□□□□ -0.63
LIMS1-202ENST00000338045 SCGB1D1O95968 90 aa11.13□□□□□ -0.63
LIMS1-202ENST00000338045 C3orf79P0CE67 100 aa11.13□□□□□ -0.63
LIMS1-202ENST00000338045 RPL32P62910 135 aaKnown RBP11.13□□□□□ -0.63
LIMS1-202ENST00000338045 ZNF56Q15929 161 aa11.13□□□□□ -0.63
LIMS1-202ENST00000338045 RRN3P1Q2M238 152 aa11.13□□□□□ -0.63
LIMS1-202ENST00000338045 LGALS9BQ3B8N2 356 aa11.13□□□□□ -0.63
LIMS1-202ENST00000338045 CFAP126Q5VTH2 177 aa11.13□□□□□ -0.63
LIMS1-202ENST00000338045 TRBV6-5A0A0K0K1A5 114 aa11.12□□□□□ -0.63
LIMS1-202ENST00000338045 RS1O15537 224 aa11.12□□□□□ -0.63
LIMS1-202ENST00000338045 KRTDAPP60985 99 aa11.12□□□□□ -0.63
LIMS1-202ENST00000338045 TRAV26-1A0A087WT03 109 aa11.12□□□□□ -0.63
LIMS1-202ENST00000338045 RHODO00212 210 aa11.12□□□□□ -0.63
LIMS1-202ENST00000338045 HBDP02042 147 aa11.12□□□□□ -0.63
LIMS1-202ENST00000338045 Q8N976 141 aa11.12□□□□□ -0.63
LIMS1-202ENST00000338045 COL6A5A8TX70 2615 aa11.11□□□□□ -0.63
LIMS1-202ENST00000338045 A4D1N5 150 aa11.11□□□□□ -0.63
LIMS1-202ENST00000338045 K7EMI3 77 aa11.11□□□□□ -0.63
LIMS1-202ENST00000338045 POLR2KP53803 58 aaKnown RBP11.11□□□□□ -0.63
LIMS1-202ENST00000338045 APOC4P55056 127 aa11.11□□□□□ -0.63
LIMS1-202ENST00000338045 LINC00173Q6ZV60 143 aa11.11□□□□□ -0.63
LIMS1-202ENST00000338045 OVOL2Q9BRP0 275 aa11.11□□□□□ -0.63
LIMS1-202ENST00000338045 HSPB8Q9UJY1 196 aa11.11□□□□□ -0.63
LIMS1-202ENST00000338045 NACAE9PAV3 2078 aa11.11□□□□□ -0.63
LIMS1-202ENST00000338045 KRTAP10-11P60412 298 aa11.1□□□□□ -0.63
LIMS1-202ENST00000338045 ST20Q9HBF5 79 aa11.1□□□□□ -0.63
LIMS1-202ENST00000338045 TRGV1A0A0A0MS02 117 aa11.1□□□□□ -0.63
LIMS1-202ENST00000338045 IGHV4-30-4P0DP06 118 aa11.1□□□□□ -0.63
LIMS1-202ENST00000338045 FCER1GP30273 86 aa11.1□□□□□ -0.63
LIMS1-202ENST00000338045 ZFP2Q6ZN57 461 aa11.1□□□□□ -0.63
LIMS1-202ENST00000338045 TMEM70Q9BUB7 260 aa11.1□□□□□ -0.63
LIMS1-202ENST00000338045 NOP10Q9NPE3 64 aaKnown RBP11.1□□□□□ -0.63
LIMS1-202ENST00000338045 CMYA5Q8N3K9 4069 aa11.09□□□□□ -0.63
LIMS1-202ENST00000338045 SMIM9A6NGZ8 99 aa11.09□□□□□ -0.63
LIMS1-202ENST00000338045 H7C1H1 209 aa11.09□□□□□ -0.63
LIMS1-202ENST00000338045 LAGE3Q14657 143 aa11.09□□□□□ -0.63
LIMS1-202ENST00000338045 Q6ZTI0 123 aa11.09□□□□□ -0.63
LIMS1-202ENST00000338045 X6R8D5 127 aa11.09□□□□□ -0.63
LIMS1-202ENST00000338045 BATFQ16520 125 aa11.08□□□□□ -0.64
LIMS1-202ENST00000338045 OR11H2Q8NH07 326 aa11.08□□□□□ -0.64
LIMS1-202ENST00000338045 IGHV3-73A0A0B4J1V6 119 aa11.08□□□□□ -0.64
LIMS1-202ENST00000338045 TRBV27A0A0K0K1C4 114 aa11.08□□□□□ -0.64
LIMS1-202ENST00000338045 IGHV3-53P01767 116 aa11.08□□□□□ -0.64
LIMS1-202ENST00000338045 TRAV4A0A0B4J268 109 aa11.07□□□□□ -0.64
LIMS1-202ENST00000338045 SDHAF1A6NFY7 115 aa11.07□□□□□ -0.64
LIMS1-202ENST00000338045 SYS1-DBNDD2H3BUS1 97 aa11.07□□□□□ -0.64
LIMS1-202ENST00000338045 VCYO14598 125 aa11.07□□□□□ -0.64
LIMS1-202ENST00000338045 TSPAN13O95857 204 aa11.07□□□□□ -0.64
LIMS1-202ENST00000338045 ORMDL2Q53FV1 153 aa11.07□□□□□ -0.64
LIMS1-202ENST00000338045 Q6ZSN1 163 aa11.07□□□□□ -0.64
LIMS1-202ENST00000338045 MAP1LC3CQ9BXW4 147 aa11.07□□□□□ -0.64
LIMS1-202ENST00000338045 A8MZ25 164 aa11.06□□□□□ -0.64
LIMS1-202ENST00000338045 RIPPLY3P57055 190 aa11.06□□□□□ -0.64
LIMS1-202ENST00000338045 HERV-K104P63124 156 aa11.06□□□□□ -0.64
LIMS1-202ENST00000338045 TEX43Q6ZNM6 134 aa11.06□□□□□ -0.64
LIMS1-202ENST00000338045 SPATA12Q7Z6I5 190 aa11.06□□□□□ -0.64
LIMS1-202ENST00000338045 G3V4G9 280 aa11.05□□□□□ -0.64
LIMS1-202ENST00000338045 CKS1BP61024 79 aa11.05□□□□□ -0.64
LIMS1-202ENST00000338045 DEFB135Q30KP9 77 aa11.05□□□□□ -0.64
LIMS1-202ENST00000338045 NEGR1Q7Z3B1 354 aa11.04□□□□□ -0.64
LIMS1-202ENST00000338045 VCX2Q9H322 139 aa11.04□□□□□ -0.64
LIMS1-202ENST00000338045 ANK2Q01484 3957 aa11.04□□□□□ -0.64
LIMS1-202ENST00000338045 NUDT3O95989 172 aa11.04□□□□□ -0.64
LIMS1-202ENST00000338045 P0DMU3 169 aa11.04□□□□□ -0.64
LIMS1-202ENST00000338045 FAM231AP0DMU4 169 aa11.04□□□□□ -0.64
LIMS1-202ENST00000338045 FAM231CP0DMU5 169 aa11.04□□□□□ -0.64
LIMS1-202ENST00000338045 SAMD5Q5TGI4 173 aa11.04□□□□□ -0.64
LIMS1-202ENST00000338045 LINC00612Q8N6U2 182 aa11.04□□□□□ -0.64
LIMS1-202ENST00000338045 STPG4Q8N801 248 aa11.04□□□□□ -0.64
LIMS1-202ENST00000338045 IFI27L1Q96BM0 104 aa11.04□□□□□ -0.64
LIMS1-202ENST00000338045 KIR2DL4Q99706 377 aa11.04□□□□□ -0.64
LIMS1-202ENST00000338045 PKD1L1Q8TDX9 2849 aa11.03□□□□□ -0.64
LIMS1-202ENST00000338045 GAGE12BA1L429 117 aa11.03□□□□□ -0.64
LIMS1-202ENST00000338045 GAGE7O76087 117 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 113.2 ms