RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 TRBV10-1A0A0K0K1A3 114 aa10.6□□□□□ -0.71
CCDC88C-202ENST00000334448 TRBV27A0A0K0K1C4 114 aa10.6□□□□□ -0.71
CCDC88C-202ENST00000334448 GAGE12BA1L429 117 aa10.6□□□□□ -0.71
CCDC88C-202ENST00000334448 HSBP1O75506 76 aa10.6□□□□□ -0.71
CCDC88C-202ENST00000334448 GAGE7O76087 117 aa10.6□□□□□ -0.71
CCDC88C-202ENST00000334448 GAGE12FP0CL80 117 aa10.6□□□□□ -0.71
CCDC88C-202ENST00000334448 GAGE12GP0CL81 117 aa10.6□□□□□ -0.71
CCDC88C-202ENST00000334448 GAGE12IP0CL82 117 aa10.6□□□□□ -0.71
CCDC88C-202ENST00000334448 S100A2P29034 98 aa10.6□□□□□ -0.71
CCDC88C-202ENST00000334448 FAM222AQ5U5X8 452 aa10.6□□□□□ -0.71
CCDC88C-202ENST00000334448 RNASEKQ6P5S7 137 aaKnown RBP10.6□□□□□ -0.71
CCDC88C-202ENST00000334448 DNAJC30Q96LL9 226 aa10.6□□□□□ -0.71
CCDC88C-202ENST00000334448 TM2D3Q9BRN9 247 aa10.6□□□□□ -0.71
CCDC88C-202ENST00000334448 TMEM70Q9BUB7 260 aa10.6□□□□□ -0.71
CCDC88C-202ENST00000334448 ST20Q9HBF5 79 aa10.6□□□□□ -0.71
CCDC88C-202ENST00000334448 Q6ZSN1 163 aa10.59□□□□□ -0.71
CCDC88C-202ENST00000334448 NACAE9PAV3 2078 aa10.58□□□□□ -0.72
CCDC88C-202ENST00000334448 LOC389332A0A1B0GUA5 103 aa10.58□□□□□ -0.72
CCDC88C-202ENST00000334448 TRBV6-4A0A1B0GX49 114 aa10.58□□□□□ -0.72
CCDC88C-202ENST00000334448 EMP1P54849 157 aa10.58□□□□□ -0.72
CCDC88C-202ENST00000334448 PDZD11Q5EBL8 140 aa10.58□□□□□ -0.72
CCDC88C-202ENST00000334448 SBSPONQ8IVN8 264 aa10.58□□□□□ -0.72
CCDC88C-202ENST00000334448 SPATA25Q9BR10 227 aa10.58□□□□□ -0.72
CCDC88C-202ENST00000334448 IGHV3-73A0A0B4J1V6 119 aa10.57□□□□□ -0.72
CCDC88C-202ENST00000334448 IGHV1-24A0A0C4DH33 117 aa10.57□□□□□ -0.72
CCDC88C-202ENST00000334448 SDHAF1A6NFY7 115 aa10.57□□□□□ -0.72
CCDC88C-202ENST00000334448 VCYO14598 125 aa10.57□□□□□ -0.72
CCDC88C-202ENST00000334448 PRB2P02812 416 aaPredicted RBP10.57□□□□□ -0.72
CCDC88C-202ENST00000334448 SPART-AS1P0CW21 52 aa10.57□□□□□ -0.72
CCDC88C-202ENST00000334448 AMTP48728 403 aa10.57□□□□□ -0.72
CCDC88C-202ENST00000334448 FHL2Q14192 279 aa10.57□□□□□ -0.72
CCDC88C-202ENST00000334448 A0A096LNJ9 63 aa10.56□□□□□ -0.72
CCDC88C-202ENST00000334448 K7EQD1 137 aa10.56□□□□□ -0.72
CCDC88C-202ENST00000334448 TCAPO15273 167 aa10.56□□□□□ -0.72
CCDC88C-202ENST00000334448 FABP4P15090 132 aa10.56□□□□□ -0.72
CCDC88C-202ENST00000334448 NEXN-AS1Q8NBZ9 246 aa10.56□□□□□ -0.72
CCDC88C-202ENST00000334448 RETNQ9HD89 108 aa10.56□□□□□ -0.72
CCDC88C-202ENST00000334448 RHOHQ15669 191 aa10.55□□□□□ -0.72
CCDC88C-202ENST00000334448 CELA1Q9UNI1 258 aa10.55□□□□□ -0.72
CCDC88C-202ENST00000334448 HBDP02042 147 aa10.54□□□□□ -0.72
CCDC88C-202ENST00000334448 DEFB130BP0DP73 79 aa10.54□□□□□ -0.72
CCDC88C-202ENST00000334448 DEFB130AP0DP74 79 aa10.54□□□□□ -0.72
CCDC88C-202ENST00000334448 LAGE3Q14657 143 aa10.54□□□□□ -0.72
CCDC88C-202ENST00000334448 ORMDL2Q53FV1 153 aa10.54□□□□□ -0.72
CCDC88C-202ENST00000334448 SLC25A29Q8N8R3 303 aa10.54□□□□□ -0.72
CCDC88C-202ENST00000334448 HUWE1Q7Z6Z7 4374 aaKnown RBP10.54□□□□□ -0.72
CCDC88C-202ENST00000334448 DNAH9Q9NYC9 4486 aa10.53□□□□□ -0.72
CCDC88C-202ENST00000334448 DEFB4AO15263 64 aa10.53□□□□□ -0.72
CCDC88C-202ENST00000334448 P0DMU3 169 aa10.53□□□□□ -0.72
CCDC88C-202ENST00000334448 FAM231AP0DMU4 169 aa10.53□□□□□ -0.72
CCDC88C-202ENST00000334448 FAM231CP0DMU5 169 aa10.53□□□□□ -0.72
CCDC88C-202ENST00000334448 LINC00694P0DN24 101 aa10.53□□□□□ -0.72
CCDC88C-202ENST00000334448 FCER1GP30273 86 aa10.53□□□□□ -0.72
CCDC88C-202ENST00000334448 DAD1P61803 113 aa10.53□□□□□ -0.72
CCDC88C-202ENST00000334448 FAM19A2Q8N3H0 131 aa10.53□□□□□ -0.72
CCDC88C-202ENST00000334448 KIR2DL4Q99706 377 aa10.53□□□□□ -0.72
CCDC88C-202ENST00000334448 TNFRSF18Q9Y5U5 241 aa10.53□□□□□ -0.72
CCDC88C-202ENST00000334448 TRBV7-3A0A075B6L6 115 aa10.52□□□□□ -0.73
CCDC88C-202ENST00000334448 TRGV4A0A0C4DH28 118 aa10.52□□□□□ -0.73
CCDC88C-202ENST00000334448 LINC01549A6NIU2 74 aa10.52□□□□□ -0.73
CCDC88C-202ENST00000334448 I3L3M4 83 aa10.52□□□□□ -0.73
CCDC88C-202ENST00000334448 ATP5G1P05496 136 aa10.52□□□□□ -0.73
CCDC88C-202ENST00000334448 OR10D4PQ8NGN7 298 aa10.52□□□□□ -0.73
CCDC88C-202ENST00000334448 B9D2Q9BPU9 175 aa10.52□□□□□ -0.73
CCDC88C-202ENST00000334448 TSHBP01222 138 aa10.51□□□□□ -0.73
CCDC88C-202ENST00000334448 G0S2P27469 103 aa10.51□□□□□ -0.73
CCDC88C-202ENST00000334448 UBE2D3P61077 147 aa10.51□□□□□ -0.73
CCDC88C-202ENST00000334448 UBE2D2P62837 147 aa10.51□□□□□ -0.73
CCDC88C-202ENST00000334448 RPL36AP83881 106 aaKnown RBP10.51□□□□□ -0.73
CCDC88C-202ENST00000334448 DEFB121Q5J5C9 76 aa10.51□□□□□ -0.73
CCDC88C-202ENST00000334448 RPL36ALQ969Q0 106 aaKnown RBP10.51□□□□□ -0.73
CCDC88C-202ENST00000334448 PRADC1Q9BSG0 188 aa10.51□□□□□ -0.73
CCDC88C-202ENST00000334448 Q9UF83 564 aa10.51□□□□□ -0.73
CCDC88C-202ENST00000334448 PRO0255Q9UI72 69 aa10.51□□□□□ -0.73
CCDC88C-202ENST00000334448 TENM3Q9P273 2699 aa10.51□□□□□ -0.73
CCDC88C-202ENST00000334448 LEPROTL1O95214 131 aa10.5□□□□□ -0.73
CCDC88C-202ENST00000334448 CRYBA4P53673 196 aa10.5□□□□□ -0.73
CCDC88C-202ENST00000334448 PMCHL1Q16048 86 aa10.5□□□□□ -0.73
CCDC88C-202ENST00000334448 DAZ4Q86SG3 579 aaKnown RBP10.5□□□□□ -0.73
CCDC88C-202ENST00000334448 DAZ3Q9NR90 486 aaKnown RBP10.5□□□□□ -0.73
CCDC88C-202ENST00000334448 HSPB8Q9UJY1 196 aa10.5□□□□□ -0.73
CCDC88C-202ENST00000334448 HHLA3Q9XRX5 114 aa10.5□□□□□ -0.73
CCDC88C-202ENST00000334448 AKR1D1P51857 326 aa10.49□□□□□ -0.73
CCDC88C-202ENST00000334448 C12orf74Q32Q52 190 aa10.49□□□□□ -0.73
CCDC88C-202ENST00000334448 NEGR1Q7Z3B1 354 aa10.49□□□□□ -0.73
CCDC88C-202ENST00000334448 MRAPQ8TCY5 172 aa10.49□□□□□ -0.73
CCDC88C-202ENST00000334448 SMIM6P0DI80 62 aa10.48□□□□□ -0.73
CCDC88C-202ENST00000334448 TOMM6Q96B49 74 aa10.48□□□□□ -0.73
CCDC88C-202ENST00000334448 A0A0J9YWU9 116 aa10.47□□□□□ -0.73
CCDC88C-202ENST00000334448 NUDT3O95989 172 aa10.47□□□□□ -0.73
CCDC88C-202ENST00000334448 JOSD1Q15040 202 aaPredicted RBP10.47□□□□□ -0.73
CCDC88C-202ENST00000334448 SPATA12Q7Z6I5 190 aa10.47□□□□□ -0.73
CCDC88C-202ENST00000334448 ZNRF2Q8NHG8 242 aa10.47□□□□□ -0.73
CCDC88C-202ENST00000334448 ZMAT4Q9H898 229 aa10.47□□□□□ -0.73
CCDC88C-202ENST00000334448 COTL1Q14019 142 aa10.46□□□□□ -0.73
CCDC88C-202ENST00000334448 GTSF1LQ9H1H1 148 aa10.46□□□□□ -0.73
CCDC88C-202ENST00000334448 CYSLTR1Q9Y271 337 aa10.46□□□□□ -0.73
CCDC88C-202ENST00000334448 GAGE12JA6NER3 117 aa10.45□□□□□ -0.74
CCDC88C-202ENST00000334448 H3BNG1 76 aa10.45□□□□□ -0.74
CCDC88C-202ENST00000334448 ATP5LO75964 103 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms