RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 TM2D2Q9BX73 214 aa13.49□□□□□ -0.25
SHKBP1-201ENST00000291842 CST9LQ9H4G1 147 aa13.49□□□□□ -0.25
SHKBP1-201ENST00000291842 IGLV4-69A0A075B6H9 119 aa13.48□□□□□ -0.25
SHKBP1-201ENST00000291842 TRGV11A0A075B6L2 103 aa13.48□□□□□ -0.25
SHKBP1-201ENST00000291842 TRBV6-5A0A0K0K1A5 114 aa13.48□□□□□ -0.25
SHKBP1-201ENST00000291842 A0A1W2PPM0 123 aa13.48□□□□□ -0.25
SHKBP1-201ENST00000291842 PROK1P58294 105 aa13.48□□□□□ -0.25
SHKBP1-201ENST00000291842 DYNLRB2Q8TF09 96 aa13.48□□□□□ -0.25
SHKBP1-201ENST00000291842 PEMTQ9UBM1 199 aa13.48□□□□□ -0.25
SHKBP1-201ENST00000291842 SETD2Q9BYW2 2564 aaPredicted RBP13.48□□□□□ -0.25
SHKBP1-201ENST00000291842 A0A1W2PRX2 142 aa13.47□□□□□ -0.25
SHKBP1-201ENST00000291842 SAMD5Q5TGI4 173 aa13.47□□□□□ -0.25
SHKBP1-201ENST00000291842 UFSP1Q6NVU6 142 aa13.47□□□□□ -0.25
SHKBP1-201ENST00000291842 E9PLD3 99 aa13.47□□□□□ -0.25
SHKBP1-201ENST00000291842 P0DMU3 169 aa13.47□□□□□ -0.25
SHKBP1-201ENST00000291842 FAM231AP0DMU4 169 aa13.47□□□□□ -0.25
SHKBP1-201ENST00000291842 FAM231CP0DMU5 169 aa13.47□□□□□ -0.25
SHKBP1-201ENST00000291842 PMVKQ15126 192 aa13.47□□□□□ -0.25
SHKBP1-201ENST00000291842 Q6ZSV7 163 aa13.47□□□□□ -0.25
SHKBP1-201ENST00000291842 GTF2H5Q6ZYL4 71 aa13.47□□□□□ -0.25
SHKBP1-201ENST00000291842 TRPT1Q86TN4 253 aaKnown RBP13.46□□□□□ -0.25
SHKBP1-201ENST00000291842 K7EP34 96 aa13.46□□□□□ -0.25
SHKBP1-201ENST00000291842 SVIPQ8NHG7 77 aa13.46□□□□□ -0.25
SHKBP1-201ENST00000291842 PHLDA1Q8WV24 401 aaPredicted RBP13.46□□□□□ -0.25
SHKBP1-201ENST00000291842 CBY1Q9Y3M2 126 aa13.46□□□□□ -0.25
SHKBP1-201ENST00000291842 SPCS1Q9Y6A9 102 aa13.46□□□□□ -0.25
SHKBP1-201ENST00000291842 RIPPLY3P57055 190 aa13.45□□□□□ -0.26
SHKBP1-201ENST00000291842 RBX1P62877 108 aa13.45□□□□□ -0.26
SHKBP1-201ENST00000291842 RNF151Q2KHN1 245 aa13.45□□□□□ -0.26
SHKBP1-201ENST00000291842 MAP6D1Q9H9H5 199 aa13.45□□□□□ -0.26
SHKBP1-201ENST00000291842 ZNF815PA8K554 130 aa13.45□□□□□ -0.26
SHKBP1-201ENST00000291842 SCGB2A2Q13296 93 aa13.45□□□□□ -0.26
SHKBP1-201ENST00000291842 DNAJC9-AS1A6NH13 148 aa13.44□□□□□ -0.26
SHKBP1-201ENST00000291842 PLEKHB2Q96CS7 222 aa13.44□□□□□ -0.26
SHKBP1-201ENST00000291842 TMEM141Q96I45 108 aa13.44□□□□□ -0.26
SHKBP1-201ENST00000291842 TIMM17AQ99595 171 aa13.44□□□□□ -0.26
SHKBP1-201ENST00000291842 DEFB114Q30KQ6 69 aa13.44□□□□□ -0.26
SHKBP1-201ENST00000291842 ZNRF2Q8NHG8 242 aa13.44□□□□□ -0.26
SHKBP1-201ENST00000291842 Q9UF83 564 aa13.44□□□□□ -0.26
SHKBP1-201ENST00000291842 ACANP16112 2415 aa13.44□□□□□ -0.26
SHKBP1-201ENST00000291842 NIPBLQ6KC79 2804 aaeCLIP13.43□□□□□ -0.26
SHKBP1-201ENST00000291842 TRBV7-3A0A075B6L6 115 aa13.43□□□□□ -0.26
SHKBP1-201ENST00000291842 FABP2P12104 132 aa13.43□□□□□ -0.26
SHKBP1-201ENST00000291842 TMEM170BQ5T4T1 132 aa13.43□□□□□ -0.26
SHKBP1-201ENST00000291842 SCGB1D4Q6XE38 83 aa13.43□□□□□ -0.26
SHKBP1-201ENST00000291842 OCIAD2Q56VL3 154 aa13.42□□□□□ -0.26
SHKBP1-201ENST00000291842 ESM1Q9NQ30 184 aa13.42□□□□□ -0.26
SHKBP1-201ENST00000291842 I3L3M4 83 aa13.42□□□□□ -0.26
SHKBP1-201ENST00000291842 TAL2Q16559 108 aa13.42□□□□□ -0.26
SHKBP1-201ENST00000291842 C12orf74Q32Q52 190 aa13.42□□□□□ -0.26
SHKBP1-201ENST00000291842 RAX2Q96IS3 184 aa13.42□□□□□ -0.26
SHKBP1-201ENST00000291842 NSUN5P1Q3KNT7 163 aa13.41□□□□□ -0.26
SHKBP1-201ENST00000291842 LINC01587Q99440 93 aa13.41□□□□□ -0.26
SHKBP1-201ENST00000291842 A8MTW9 85 aa13.4□□□□□ -0.26
SHKBP1-201ENST00000291842 SPAG8Q99932 426 aaPredicted RBP13.4□□□□□ -0.26
SHKBP1-201ENST00000291842 LINC01549A6NIU2 74 aa13.4□□□□□ -0.26
SHKBP1-201ENST00000291842 Q6ZSN1 163 aa13.4□□□□□ -0.26
SHKBP1-201ENST00000291842 C20orf203Q8NBC4 194 aa13.4□□□□□ -0.26
SHKBP1-201ENST00000291842 RHOHQ15669 191 aa13.39□□□□□ -0.27
SHKBP1-201ENST00000291842 TSPEAR-AS2P59090 65 aa13.39□□□□□ -0.27
SHKBP1-201ENST00000291842 IGLL5B9A064 214 aa13.38□□□□□ -0.27
SHKBP1-201ENST00000291842 M0R2P5 195 aa13.38□□□□□ -0.27
SHKBP1-201ENST00000291842 CD28P10747 220 aa13.38□□□□□ -0.27
SHKBP1-201ENST00000291842 HERVK_113P61574 105 aa13.38□□□□□ -0.27
SHKBP1-201ENST00000291842 PAPPA-AS1Q5QFB9 102 aa13.38□□□□□ -0.27
SHKBP1-201ENST00000291842 XCL2Q9UBD3 114 aa13.38□□□□□ -0.27
SHKBP1-201ENST00000291842 NACAE9PAV3 2078 aa13.38□□□□□ -0.27
SHKBP1-201ENST00000291842 TRAV2A0A0B4J234 112 aa13.38□□□□□ -0.27
SHKBP1-201ENST00000291842 SAP30O75446 220 aa13.38□□□□□ -0.27
SHKBP1-201ENST00000291842 MRPL16Q9NX20 251 aaKnown RBP13.38□□□□□ -0.27
SHKBP1-201ENST00000291842 MTORP42345 2549 aa13.38□□□□□ -0.27
SHKBP1-201ENST00000291842 SRSF9Q13242 221 aaKnown RBP eCLIP13.37□□□□□ -0.27
SHKBP1-201ENST00000291842 TMEM86BQ8N661 226 aa13.37□□□□□ -0.27
SHKBP1-201ENST00000291842 IGHV3OR16-12A0A075B7B8 117 aa13.37□□□□□ -0.27
SHKBP1-201ENST00000291842 ZNF415Q09FC8 603 aa13.37□□□□□ -0.27
SHKBP1-201ENST00000291842 CEMP1Q6PRD7 247 aaPredicted RBP13.37□□□□□ -0.27
SHKBP1-201ENST00000291842 PDZD2O15018 2839 aa13.37□□□□□ -0.27
SHKBP1-201ENST00000291842 ITPR2Q14571 2701 aa13.37□□□□□ -0.27
SHKBP1-201ENST00000291842 IGHV3-64A0A075B6Q5 118 aa13.36□□□□□ -0.27
SHKBP1-201ENST00000291842 ODF3L2Q3SX64 289 aa13.36□□□□□ -0.27
SHKBP1-201ENST00000291842 ZNF479Q96JC4 524 aa13.36□□□□□ -0.27
SHKBP1-201ENST00000291842 TNFRSF18Q9Y5U5 241 aa13.36□□□□□ -0.27
SHKBP1-201ENST00000291842 CFAP126Q5VTH2 177 aa13.35□□□□□ -0.27
SHKBP1-201ENST00000291842 C11orf72Q8NBR9 251 aa13.35□□□□□ -0.27
SHKBP1-201ENST00000291842 OR5A1Q8NGJ0 315 aa13.35□□□□□ -0.27
SHKBP1-201ENST00000291842 NOTCH3Q9UM47 2321 aa13.35□□□□□ -0.27
SHKBP1-201ENST00000291842 IGLV4-3A0A075B6K6 122 aa13.35□□□□□ -0.27
SHKBP1-201ENST00000291842 A8MWV9 139 aa13.35□□□□□ -0.27
SHKBP1-201ENST00000291842 CCL24O00175 119 aa13.35□□□□□ -0.27
SHKBP1-201ENST00000291842 AZU1P20160 251 aa13.35□□□□□ -0.27
SHKBP1-201ENST00000291842 RNASE13Q5GAN3 156 aaKnown RBP13.35□□□□□ -0.27
SHKBP1-201ENST00000291842 A0A0J9YXV3 536 aa13.34□□□□□ -0.27
SHKBP1-201ENST00000291842 INSP01308 110 aa13.34□□□□□ -0.27
SHKBP1-201ENST00000291842 CITED2Q99967 270 aaPredicted RBP13.34□□□□□ -0.27
SHKBP1-201ENST00000291842 VCX2Q9H322 139 aa13.34□□□□□ -0.27
SHKBP1-201ENST00000291842 IGHV3-38A0A0C4DH36 116 aa13.33□□□□□ -0.28
SHKBP1-201ENST00000291842 A0A0J9YY99 117 aa13.32□□□□□ -0.28
SHKBP1-201ENST00000291842 YAE1D1Q9NRH1 226 aa13.32□□□□□ -0.28
SHKBP1-201ENST00000291842 J3QQQ9 107 aa13.32□□□□□ -0.28
SHKBP1-201ENST00000291842 NFE4Q86UQ8 179 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms