RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 TAL2Q16559 108 aa9.5□□□□□ -0.89
LIG1-201ENST00000263274 ZFAND6Q6FIF0 208 aa9.5□□□□□ -0.89
LIG1-201ENST00000263274 ZFP2Q6ZN57 461 aa9.5□□□□□ -0.89
LIG1-201ENST00000263274 TRBV7-3A0A075B6L6 115 aa9.49□□□□□ -0.89
LIG1-201ENST00000263274 Q1RN00 199 aa9.49□□□□□ -0.89
LIG1-201ENST00000263274 C1QTNF4Q9BXJ3 329 aa9.49□□□□□ -0.89
LIG1-201ENST00000263274 VCYO14598 125 aa9.49□□□□□ -0.89
LIG1-201ENST00000263274 LGALS3P17931 250 aaKnown RBP9.49□□□□□ -0.89
LIG1-201ENST00000263274 RAX2Q96IS3 184 aa9.49□□□□□ -0.89
LIG1-201ENST00000263274 CDIP1Q9H305 208 aa9.49□□□□□ -0.89
LIG1-201ENST00000263274 PPP1R17O96001 155 aa9.49□□□□□ -0.89
LIG1-201ENST00000263274 KHDC1LQ5JSQ8 128 aa9.49□□□□□ -0.89
LIG1-201ENST00000263274 BEX4Q9NWD9 120 aaPredicted RBP9.49□□□□□ -0.89
LIG1-201ENST00000263274 SYNJ2BPP57105 145 aa9.48□□□□□ -0.89
LIG1-201ENST00000263274 PMVKQ15126 192 aa9.48□□□□□ -0.89
LIG1-201ENST00000263274 DOPEY1Q5JWR5 2465 aa9.48□□□□□ -0.89
LIG1-201ENST00000263274 TRAV2A0A0B4J234 112 aa9.48□□□□□ -0.89
LIG1-201ENST00000263274 KNCNA6PVL3 124 aa9.48□□□□□ -0.89
LIG1-201ENST00000263274 IGHG2P01859 326 aa9.47□□□□□ -0.89
LIG1-201ENST00000263274 NFE4Q86UQ8 179 aa9.47□□□□□ -0.89
LIG1-201ENST00000263274 ZANQ9Y493 2812 aa9.47□□□□□ -0.89
LIG1-201ENST00000263274 ADARB2-AS1A8MUL3 147 aa9.47□□□□□ -0.89
LIG1-201ENST00000263274 PRSS2P07478 247 aa9.47□□□□□ -0.89
LIG1-201ENST00000263274 RNASE13Q5GAN3 156 aaKnown RBP9.47□□□□□ -0.89
LIG1-201ENST00000263274 SOCS3O14543 225 aa9.47□□□□□ -0.89
LIG1-201ENST00000263274 IGHV4-59P01825 116 aa9.47□□□□□ -0.89
LIG1-201ENST00000263274 ZNF876PQ49A33 203 aa9.47□□□□□ -0.89
LIG1-201ENST00000263274 DLX4Q92988 240 aaPredicted RBP9.47□□□□□ -0.89
LIG1-201ENST00000263274 NAV2Q8IVL1 2488 aa9.47□□□□□ -0.89
LIG1-201ENST00000263274 SNRPD3P62318 126 aaKnown RBP9.46□□□□□ -0.89
LIG1-201ENST00000263274 PPDPFQ9H3Y8 114 aa9.46□□□□□ -0.89
LIG1-201ENST00000263274 CELSR2Q9HCU4 2923 aa9.46□□□□□ -0.89
LIG1-201ENST00000263274 MTORP42345 2549 aa9.46□□□□□ -0.9
LIG1-201ENST00000263274 PRM2P04554 102 aa9.46□□□□□ -0.9
LIG1-201ENST00000263274 Q8N1Y9 231 aa9.46□□□□□ -0.9
LIG1-201ENST00000263274 AVPP01185 164 aa9.46□□□□□ -0.9
LIG1-201ENST00000263274 FHL3Q13643 280 aa9.46□□□□□ -0.9
LIG1-201ENST00000263274 MORN3Q6PF18 240 aaPredicted RBP9.46□□□□□ -0.9
LIG1-201ENST00000263274 CRYGDP07320 174 aa9.45□□□□□ -0.9
LIG1-201ENST00000263274 MSMBP08118 114 aa9.45□□□□□ -0.9
LIG1-201ENST00000263274 NPC2P61916 151 aa9.45□□□□□ -0.9
LIG1-201ENST00000263274 TTC32Q5I0X7 151 aa9.45□□□□□ -0.9
LIG1-201ENST00000263274 HIST2H2BDQ6DRA6 164 aa9.45□□□□□ -0.9
LIG1-201ENST00000263274 PRO0461Q9UI25 63 aa9.45□□□□□ -0.9
LIG1-201ENST00000263274 ACANP16112 2415 aa9.44□□□□□ -0.9
LIG1-201ENST00000263274 TSHBP01222 138 aa9.44□□□□□ -0.9
LIG1-201ENST00000263274 A6NDX4 124 aa9.44□□□□□ -0.9
LIG1-201ENST00000263274 J3QQQ9 107 aa9.44□□□□□ -0.9
LIG1-201ENST00000263274 RNF223E7ERA6 249 aa9.43□□□□□ -0.9
LIG1-201ENST00000263274 P0DMU3 169 aa9.43□□□□□ -0.9
LIG1-201ENST00000263274 FAM231AP0DMU4 169 aa9.43□□□□□ -0.9
LIG1-201ENST00000263274 FAM231CP0DMU5 169 aa9.43□□□□□ -0.9
LIG1-201ENST00000263274 TSPEAR-AS2P59090 65 aa9.43□□□□□ -0.9
LIG1-201ENST00000263274 PAPPA-AS1Q5QFB9 102 aa9.43□□□□□ -0.9
LIG1-201ENST00000263274 C10orf105Q8TEF2 133 aa9.43□□□□□ -0.9
LIG1-201ENST00000263274 ANKRD17O75179 2603 aaKnown RBP9.43□□□□□ -0.9
LIG1-201ENST00000263274 A0A0J9YXV3 536 aa9.43□□□□□ -0.9
LIG1-201ENST00000263274 GAGE2BQ13066 116 aa9.43□□□□□ -0.9
LIG1-201ENST00000263274 DEFB112Q30KQ8 113 aa9.43□□□□□ -0.9
LIG1-201ENST00000263274 GAGE2EQ4V326 116 aa9.43□□□□□ -0.9
LIG1-201ENST00000263274 ZNF843Q8N446 348 aa9.43□□□□□ -0.9
LIG1-201ENST00000263274 ZNRF2Q8NHG8 242 aa9.43□□□□□ -0.9
LIG1-201ENST00000263274 PPDPFLQ8WWR9 84 aa9.43□□□□□ -0.9
LIG1-201ENST00000263274 CITED2Q99967 270 aaPredicted RBP9.43□□□□□ -0.9
LIG1-201ENST00000263274 GAGE2DQ9UEU5 116 aa9.43□□□□□ -0.9
LIG1-201ENST00000263274 A0A0J9YY99 117 aa9.42□□□□□ -0.9
LIG1-201ENST00000263274 SNCGO76070 127 aa9.42□□□□□ -0.9
LIG1-201ENST00000263274 POLR2KP53803 58 aaKnown RBP9.42□□□□□ -0.9
LIG1-201ENST00000263274 CEMP1Q6PRD7 247 aaPredicted RBP9.42□□□□□ -0.9
LIG1-201ENST00000263274 C3orf56Q8N813 242 aa9.42□□□□□ -0.9
LIG1-201ENST00000263274 IGLV4-69A0A075B6H9 119 aa9.42□□□□□ -0.9
LIG1-201ENST00000263274 TRAV25A0A0B4J276 109 aa9.42□□□□□ -0.9
LIG1-201ENST00000263274 SMCPP49901 116 aaPredicted RBP9.42□□□□□ -0.9
LIG1-201ENST00000263274 DEFB136Q30KP8 78 aa9.42□□□□□ -0.9
LIG1-201ENST00000263274 CFAP126Q5VTH2 177 aa9.42□□□□□ -0.9
LIG1-201ENST00000263274 DUX3Q96PT4 197 aa9.42□□□□□ -0.9
LIG1-201ENST00000263274 IGHV1OR15-1A0A075B7D0 117 aa9.41□□□□□ -0.9
LIG1-201ENST00000263274 LINC00315P59091 139 aa9.41□□□□□ -0.9
LIG1-201ENST00000263274 IGIPA6NJ69 53 aa9.41□□□□□ -0.9
LIG1-201ENST00000263274 CCDC179H3BU77 68 aa9.41□□□□□ -0.9
LIG1-201ENST00000263274 PROK1P58294 105 aa9.41□□□□□ -0.9
LIG1-201ENST00000263274 C19orf54Q5BKX5 351 aa9.41□□□□□ -0.9
LIG1-201ENST00000263274 DCANP1Q8TF63 244 aa9.41□□□□□ -0.9
LIG1-201ENST00000263274 IGHV3OR16-12A0A075B7B8 117 aa9.41□□□□□ -0.9
LIG1-201ENST00000263274 KLLNB2CW77 178 aa9.41□□□□□ -0.9
LIG1-201ENST00000263274 KIF25-AS1Q9Y6Z4 181 aa9.41□□□□□ -0.9
LIG1-201ENST00000263274 GAGE12JA6NER3 117 aa9.4□□□□□ -0.9
LIG1-201ENST00000263274 A8MWV9 139 aa9.4□□□□□ -0.9
LIG1-201ENST00000263274 GAGE7O76087 117 aa9.4□□□□□ -0.9
LIG1-201ENST00000263274 GAGE12FP0CL80 117 aa9.4□□□□□ -0.9
LIG1-201ENST00000263274 GAGE12GP0CL81 117 aa9.4□□□□□ -0.9
LIG1-201ENST00000263274 GAGE12IP0CL82 117 aa9.4□□□□□ -0.9
LIG1-201ENST00000263274 GAGE4Q13068 117 aa9.4□□□□□ -0.9
LIG1-201ENST00000263274 LYRM7Q5U5X0 104 aa9.4□□□□□ -0.9
LIG1-201ENST00000263274 NDUFA11Q86Y39 141 aa9.4□□□□□ -0.9
LIG1-201ENST00000263274 ZNF580Q9UK33 172 aa9.4□□□□□ -0.9
LIG1-201ENST00000263274 TENM4Q6N022 2769 aa9.4□□□□□ -0.9
LIG1-201ENST00000263274 CD28P10747 220 aa9.4□□□□□ -0.9
LIG1-201ENST00000263274 TMEM141Q96I45 108 aa9.4□□□□□ -0.9
LIG1-201ENST00000263274 B4DSR2 109 aa9.4□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 173.5 ms