RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 B9D2Q9BPU9 175 aa6.37□□□□□ -1.39
VPS4B-201ENST00000238497 DLEU1O43261 78 aa6.37□□□□□ -1.39
VPS4B-201ENST00000238497 ST20Q9HBF5 79 aa6.37□□□□□ -1.39
VPS4B-201ENST00000238497 K7EMT4 169 aa6.36□□□□□ -1.39
VPS4B-201ENST00000238497 K7EQG2 157 aa6.36□□□□□ -1.39
VPS4B-201ENST00000238497 RNASE13Q5GAN3 156 aaKnown RBP6.36□□□□□ -1.39
VPS4B-201ENST00000238497 LINC01545Q5VT33 79 aa6.36□□□□□ -1.39
VPS4B-201ENST00000238497 Q8N8P6 123 aa6.36□□□□□ -1.39
VPS4B-201ENST00000238497 RASL10AQ92737 203 aa6.36□□□□□ -1.39
VPS4B-201ENST00000238497 IGHV1OR15-1A0A075B7D0 117 aa6.36□□□□□ -1.39
VPS4B-201ENST00000238497 IGHV3-38A0A0C4DH36 116 aa6.36□□□□□ -1.39
VPS4B-201ENST00000238497 SMIM2Q9BVW6 85 aa6.36□□□□□ -1.39
VPS4B-201ENST00000238497 WFDC10AQ9H1F0 79 aa6.36□□□□□ -1.39
VPS4B-201ENST00000238497 LBHQ53QV2 105 aaPredicted RBP6.35□□□□□ -1.39
VPS4B-201ENST00000238497 C2orf66Q6UXQ4 117 aa6.35□□□□□ -1.39
VPS4B-201ENST00000238497 PHLDA1Q8WV24 401 aaPredicted RBP6.35□□□□□ -1.39
VPS4B-201ENST00000238497 OPRPNQ99935 248 aaPredicted RBP6.35□□□□□ -1.39
VPS4B-201ENST00000238497 SDHAF1A6NFY7 115 aa6.35□□□□□ -1.39
VPS4B-201ENST00000238497 K7EP13 123 aa6.35□□□□□ -1.39
VPS4B-201ENST00000238497 IGKCP01834 107 aa6.35□□□□□ -1.39
VPS4B-201ENST00000238497 KIR2DL4Q99706 377 aa6.35□□□□□ -1.39
VPS4B-201ENST00000238497 SFTA2Q6UW10 78 aa6.35□□□□□ -1.39
VPS4B-201ENST00000238497 ADAMTSL5Q6ZMM2 481 aa6.35□□□□□ -1.39
VPS4B-201ENST00000238497 STHQ8IWL8 128 aa6.35□□□□□ -1.39
VPS4B-201ENST00000238497 NRACQ8N912 160 aa6.35□□□□□ -1.39
VPS4B-201ENST00000238497 MRPL16Q9NX20 251 aaKnown RBP6.35□□□□□ -1.39
VPS4B-201ENST00000238497 LENEPQ9Y5L5 61 aa6.35□□□□□ -1.39
VPS4B-201ENST00000238497 U3KQK5 164 aa6.35□□□□□ -1.39
VPS4B-201ENST00000238497 IGKV2D-26A0A0A0MRZ7 120 aa6.34□□□□□ -1.39
VPS4B-201ENST00000238497 DUSP14O95147 198 aaKnown RBP6.34□□□□□ -1.39
VPS4B-201ENST00000238497 TMEM170BQ5T4T1 132 aa6.34□□□□□ -1.39
VPS4B-201ENST00000238497 SUMO4Q6EEV6 95 aa6.34□□□□□ -1.39
VPS4B-201ENST00000238497 SYT8Q8NBV8 401 aa6.34□□□□□ -1.39
VPS4B-201ENST00000238497 IGLV1-51P01701 117 aa6.34□□□□□ -1.39
VPS4B-201ENST00000238497 COX8CQ7Z4L0 72 aa6.34□□□□□ -1.39
VPS4B-201ENST00000238497 VPS25Q9BRG1 176 aa6.34□□□□□ -1.39
VPS4B-201ENST00000238497 ZMAT4Q9H898 229 aa6.34□□□□□ -1.39
VPS4B-201ENST00000238497 TP53TG1Q9Y2A0 90 aa6.34□□□□□ -1.39
VPS4B-201ENST00000238497 COL7A1Q02388 2944 aa6.34□□□□□ -1.39
VPS4B-201ENST00000238497 DPM2O94777 84 aa6.33□□□□□ -1.4
VPS4B-201ENST00000238497 IGHV4-30-4P0DP06 118 aa6.33□□□□□ -1.4
VPS4B-201ENST00000238497 SBSPONQ8IVN8 264 aa6.33□□□□□ -1.4
VPS4B-201ENST00000238497 ATP6V0BQ99437 205 aa6.33□□□□□ -1.4
VPS4B-201ENST00000238497 SCRT2Q9NQ03 307 aa6.33□□□□□ -1.4
VPS4B-201ENST00000238497 ATP5LO75964 103 aa6.33□□□□□ -1.4
VPS4B-201ENST00000238497 A6NJY4 79 aa6.33□□□□□ -1.4
VPS4B-201ENST00000238497 CRXO43186 299 aaPredicted RBP6.33□□□□□ -1.4
VPS4B-201ENST00000238497 RBX1P62877 108 aa6.33□□□□□ -1.4
VPS4B-201ENST00000238497 SCGB1D4Q6XE38 83 aa6.33□□□□□ -1.4
VPS4B-201ENST00000238497 CNFNQ9BYD5 112 aa6.33□□□□□ -1.4
VPS4B-201ENST00000238497 ODF1Q14990 250 aa6.32□□□□□ -1.4
VPS4B-201ENST00000238497 LGALS9BQ3B8N2 356 aa6.32□□□□□ -1.4
VPS4B-201ENST00000238497 LGALS9CQ6DKI2 356 aa6.32□□□□□ -1.4
VPS4B-201ENST00000238497 Q9UF83 564 aa6.32□□□□□ -1.4
VPS4B-201ENST00000238497 TRGV1A0A0A0MS02 117 aa6.32□□□□□ -1.4
VPS4B-201ENST00000238497 PRSS29PA6NIE9 313 aa6.32□□□□□ -1.4
VPS4B-201ENST00000238497 KLLNB2CW77 178 aa6.32□□□□□ -1.4
VPS4B-201ENST00000238497 NHLRC4P0CG21 123 aaPredicted RBP6.32□□□□□ -1.4
VPS4B-201ENST00000238497 COX8AP10176 69 aa6.32□□□□□ -1.4
VPS4B-201ENST00000238497 CEMP1Q6PRD7 247 aaPredicted RBP6.32□□□□□ -1.4
VPS4B-201ENST00000238497 OR4C5Q8NGB2 326 aa6.32□□□□□ -1.4
VPS4B-201ENST00000238497 MRAP2Q96G30 205 aa6.32□□□□□ -1.4
VPS4B-201ENST00000238497 WWC2-AS2Q96NR7 200 aa6.32□□□□□ -1.4
VPS4B-201ENST00000238497 MRPS16Q9Y3D3 137 aaKnown RBP6.32□□□□□ -1.4
VPS4B-201ENST00000238497 TMEM97Q5BJF2 176 aa6.32□□□□□ -1.4
VPS4B-201ENST00000238497 AMMECR1LQ6DCA0 310 aa6.32□□□□□ -1.4
VPS4B-201ENST00000238497 FOXI2Q6ZQN5 318 aa6.32□□□□□ -1.4
VPS4B-201ENST00000238497 RBMY1A1P0DJD3 496 aaKnown RBP6.31□□□□□ -1.4
VPS4B-201ENST00000238497 RBMY1CP0DJD4 496 aa6.31□□□□□ -1.4
VPS4B-201ENST00000238497 RBMY1FQ15415 496 aaKnown RBP6.31□□□□□ -1.4
VPS4B-201ENST00000238497 DEFB114Q30KQ6 69 aa6.31□□□□□ -1.4
VPS4B-201ENST00000238497 ORMDL2Q53FV1 153 aa6.31□□□□□ -1.4
VPS4B-201ENST00000238497 BVES-AS1Q5T3Y7 98 aa6.31□□□□□ -1.4
VPS4B-201ENST00000238497 CYSLTR1Q9Y271 337 aa6.31□□□□□ -1.4
VPS4B-201ENST00000238497 IGKV3OR2-268A0A0C4DH90 116 aa6.31□□□□□ -1.4
VPS4B-201ENST00000238497 OR11H12B2RN74 326 aa6.31□□□□□ -1.4
VPS4B-201ENST00000238497 TMEM238C9JI98 176 aa6.31□□□□□ -1.4
VPS4B-201ENST00000238497 H3BMM0 161 aa6.31□□□□□ -1.4
VPS4B-201ENST00000238497 H3BUT2 72 aa6.31□□□□□ -1.4
VPS4B-201ENST00000238497 BRI3O95415 125 aa6.31□□□□□ -1.4
VPS4B-201ENST00000238497 KLK9Q2XQG4 91 aa6.31□□□□□ -1.4
VPS4B-201ENST00000238497 DEFB125Q8N687 156 aa6.31□□□□□ -1.4
VPS4B-201ENST00000238497 MAP6D1Q9H9H5 199 aa6.31□□□□□ -1.4
VPS4B-201ENST00000238497 TNFRSF18Q9Y5U5 241 aa6.31□□□□□ -1.4
VPS4B-201ENST00000238497 DNAH3Q8TD57 4116 aa6.3□□□□□ -1.4
VPS4B-201ENST00000238497 HIST1H4GQ99525 98 aa6.3□□□□□ -1.4
VPS4B-201ENST00000238497 DNAH9Q9NYC9 4486 aa6.3□□□□□ -1.4
VPS4B-201ENST00000238497 K7ERJ3 54 aa6.3□□□□□ -1.4
VPS4B-201ENST00000238497 AZU1P20160 251 aa6.3□□□□□ -1.4
VPS4B-201ENST00000238497 NHP2Q9NX24 153 aaKnown RBP6.3□□□□□ -1.4
VPS4B-201ENST00000238497 VCYO14598 125 aa6.3□□□□□ -1.4
VPS4B-201ENST00000238497 SRSF9Q13242 221 aaKnown RBP eCLIP6.3□□□□□ -1.4
VPS4B-201ENST00000238497 OR11H2Q8NH07 326 aa6.3□□□□□ -1.4
VPS4B-201ENST00000238497 FAM110AQ9BQ89 295 aa6.3□□□□□ -1.4
VPS4B-201ENST00000238497 RBMY1BA6NDE4 496 aaKnown RBP6.29□□□□□ -1.4
VPS4B-201ENST00000238497 RBMY1EA6NEQ0 496 aaKnown RBP6.29□□□□□ -1.4
VPS4B-201ENST00000238497 RBMY1DP0C7P1 496 aaKnown RBP6.29□□□□□ -1.4
VPS4B-201ENST00000238497 IGLV2-18A0A075B6J9 118 aa6.29□□□□□ -1.4
VPS4B-201ENST00000238497 SAMD13Q5VXD3 122 aa6.29□□□□□ -1.4
VPS4B-201ENST00000238497 MAPKAPK5-AS1Q8N8E1 139 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms