RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 A0A1W2PRX2 142 aa7.92□□□□□ -1.14
CUX1-221ENST00000622516 K7EQG2 157 aa7.92□□□□□ -1.14
CUX1-221ENST00000622516 SIVA1O15304 175 aa7.92□□□□□ -1.14
CUX1-221ENST00000622516 FCER1GP30273 86 aa7.92□□□□□ -1.14
CUX1-221ENST00000622516 MDFICQ9P1T7 246 aa7.92□□□□□ -1.14
CUX1-221ENST00000622516 GAGE12BA1L429 117 aa7.91□□□□□ -1.14
CUX1-221ENST00000622516 KNCNA6PVL3 124 aa7.91□□□□□ -1.14
CUX1-221ENST00000622516 SAP30O75446 220 aa7.91□□□□□ -1.14
CUX1-221ENST00000622516 SMIM17P0DL12 118 aa7.91□□□□□ -1.14
CUX1-221ENST00000622516 Q8N8P6 123 aa7.91□□□□□ -1.14
CUX1-221ENST00000622516 OR1N2Q8NGR9 330 aa7.91□□□□□ -1.14
CUX1-221ENST00000622516 RASL10AQ92737 203 aa7.91□□□□□ -1.14
CUX1-221ENST00000622516 ANK3Q12955 4377 aaKnown RBP7.91□□□□□ -1.14
CUX1-221ENST00000622516 A0A0J9YX75 114 aa7.91□□□□□ -1.14
CUX1-221ENST00000622516 NUDT3O95989 172 aa7.91□□□□□ -1.14
CUX1-221ENST00000622516 FAM74A4Q5TZK3 123 aa7.91□□□□□ -1.14
CUX1-221ENST00000622516 MYOZ3Q8TDC0 251 aa7.91□□□□□ -1.14
CUX1-221ENST00000622516 FN1P02751 2386 aaKnown RBP7.91□□□□□ -1.14
CUX1-221ENST00000622516 TMEM89A2RUT3 159 aa7.9□□□□□ -1.14
CUX1-221ENST00000622516 TSPAN13O95857 204 aa7.9□□□□□ -1.14
CUX1-221ENST00000622516 AZU1P20160 251 aa7.9□□□□□ -1.14
CUX1-221ENST00000622516 AMMECR1LQ6DCA0 310 aa7.9□□□□□ -1.14
CUX1-221ENST00000622516 APRG1Q8IVJ8 170 aa7.9□□□□□ -1.14
CUX1-221ENST00000622516 FOXC2Q99958 501 aa7.9□□□□□ -1.14
CUX1-221ENST00000622516 NACAE9PAV3 2078 aa7.9□□□□□ -1.14
CUX1-221ENST00000622516 KLHL30-AS1Q8NEE0 82 aa7.9□□□□□ -1.15
CUX1-221ENST00000622516 TTTY13Q9BZ97 58 aa7.9□□□□□ -1.15
CUX1-221ENST00000622516 DPH3P1Q9H4G8 78 aa7.9□□□□□ -1.15
CUX1-221ENST00000622516 YAE1D1Q9NRH1 226 aa7.9□□□□□ -1.15
CUX1-221ENST00000622516 NMUP48645 174 aa7.89□□□□□ -1.15
CUX1-221ENST00000622516 LAGE3Q14657 143 aa7.89□□□□□ -1.15
CUX1-221ENST00000622516 DLX4Q92988 240 aaPredicted RBP7.89□□□□□ -1.15
CUX1-221ENST00000622516 HIVEP2P31629 2446 aa7.89□□□□□ -1.15
CUX1-221ENST00000622516 C2CD3Q4AC94 2353 aa7.89□□□□□ -1.15
CUX1-221ENST00000622516 C7orf71A4D174 169 aa7.89□□□□□ -1.15
CUX1-221ENST00000622516 F5H697 171 aa7.89□□□□□ -1.15
CUX1-221ENST00000622516 TAX1BP3O14907 124 aa7.89□□□□□ -1.15
CUX1-221ENST00000622516 DEFB131AP59861 70 aa7.89□□□□□ -1.15
CUX1-221ENST00000622516 LGALS9BQ3B8N2 356 aa7.89□□□□□ -1.15
CUX1-221ENST00000622516 LGALS9CQ6DKI2 356 aa7.89□□□□□ -1.15
CUX1-221ENST00000622516 PCP2Q8IVA1 136 aa7.89□□□□□ -1.15
CUX1-221ENST00000622516 Q8N1Y9 231 aa7.89□□□□□ -1.15
CUX1-221ENST00000622516 ESM1Q9NQ30 184 aa7.89□□□□□ -1.15
CUX1-221ENST00000622516 SUMO2P61956 95 aaKnown RBP7.89□□□□□ -1.15
CUX1-221ENST00000622516 Q6ZSV7 163 aa7.89□□□□□ -1.15
CUX1-221ENST00000622516 TMEM61Q8N0U2 210 aa7.89□□□□□ -1.15
CUX1-221ENST00000622516 DNAJC9-AS1A6NH13 148 aa7.88□□□□□ -1.15
CUX1-221ENST00000622516 SMIM2Q9BVW6 85 aa7.88□□□□□ -1.15
CUX1-221ENST00000622516 VCX2Q9H322 139 aa7.88□□□□□ -1.15
CUX1-221ENST00000622516 SS18L2Q9UHA2 77 aa7.88□□□□□ -1.15
CUX1-221ENST00000622516 LINC01619G3V211 115 aa7.88□□□□□ -1.15
CUX1-221ENST00000622516 LGALS9O00182 355 aa7.88□□□□□ -1.15
CUX1-221ENST00000622516 SMAGPQ0VAQ4 97 aa7.88□□□□□ -1.15
CUX1-221ENST00000622516 AP1S3Q96PC3 154 aa7.88□□□□□ -1.15
CUX1-221ENST00000622516 TMEM160Q9NX00 188 aa7.88□□□□□ -1.15
CUX1-221ENST00000622516 OTOGQ6ZRI0 2925 aa7.88□□□□□ -1.15
CUX1-221ENST00000622516 OR11H12B2RN74 326 aa7.87□□□□□ -1.15
CUX1-221ENST00000622516 COX8AP10176 69 aa7.87□□□□□ -1.15
CUX1-221ENST00000622516 OR11H2Q8NH07 326 aa7.87□□□□□ -1.15
CUX1-221ENST00000622516 MRAP2Q96G30 205 aa7.87□□□□□ -1.15
CUX1-221ENST00000622516 IGKV2D-26A0A0A0MRZ7 120 aa7.87□□□□□ -1.15
CUX1-221ENST00000622516 LINC01546A6NGU7 62 aa7.87□□□□□ -1.15
CUX1-221ENST00000622516 RBMY1A1P0DJD3 496 aaKnown RBP7.87□□□□□ -1.15
CUX1-221ENST00000622516 RBMY1CP0DJD4 496 aa7.87□□□□□ -1.15
CUX1-221ENST00000622516 RBMY1FQ15415 496 aaKnown RBP7.87□□□□□ -1.15
CUX1-221ENST00000622516 MTURNQ8N3F0 131 aa7.87□□□□□ -1.15
CUX1-221ENST00000622516 RNF152Q8N8N0 203 aa7.87□□□□□ -1.15
CUX1-221ENST00000622516 OR9G4Q8NGQ1 327 aa7.87□□□□□ -1.15
CUX1-221ENST00000622516 PLA2G2AP14555 144 aa7.86□□□□□ -1.15
CUX1-221ENST00000622516 LINC00315P59091 139 aa7.86□□□□□ -1.15
CUX1-221ENST00000622516 C2orf91Q6ZV80 131 aa7.86□□□□□ -1.15
CUX1-221ENST00000622516 GTSCR1Q86UQ5 136 aa7.86□□□□□ -1.15
CUX1-221ENST00000622516 SIGMAR1Q99720 223 aa7.86□□□□□ -1.15
CUX1-221ENST00000622516 Q8N2B8 174 aa7.86□□□□□ -1.15
CUX1-221ENST00000622516 GEMIN7Q9H840 131 aaKnown RBP7.86□□□□□ -1.15
CUX1-221ENST00000622516 MRPL35Q9NZE8 188 aaKnown RBP7.86□□□□□ -1.15
CUX1-221ENST00000622516 IGHV3-16A0A0C4DH30 117 aa7.86□□□□□ -1.15
CUX1-221ENST00000622516 FGF6P10767 208 aa7.86□□□□□ -1.15
CUX1-221ENST00000622516 SMR3AQ99954 134 aa7.86□□□□□ -1.15
CUX1-221ENST00000622516 KIF25-AS1Q9Y6Z4 181 aa7.86□□□□□ -1.15
CUX1-221ENST00000622516 IGHV3-73A0A0B4J1V6 119 aa7.85□□□□□ -1.15
CUX1-221ENST00000622516 BVES-AS1Q5T3Y7 98 aa7.85□□□□□ -1.15
CUX1-221ENST00000622516 SUMO4Q6EEV6 95 aa7.85□□□□□ -1.15
CUX1-221ENST00000622516 DEFB125Q8N687 156 aa7.85□□□□□ -1.15
CUX1-221ENST00000622516 GTSF1LQ9H1H1 148 aa7.85□□□□□ -1.15
CUX1-221ENST00000622516 HHLA3Q9XRX5 114 aa7.85□□□□□ -1.15
CUX1-221ENST00000622516 IGHV1OR15-1A0A075B7D0 117 aa7.85□□□□□ -1.15
CUX1-221ENST00000622516 OXLD1Q5BKU9 147 aa7.85□□□□□ -1.15
CUX1-221ENST00000622516 AMTNQ6UX39 209 aa7.85□□□□□ -1.15
CUX1-221ENST00000622516 J3QKU1 62 aa7.84□□□□□ -1.15
CUX1-221ENST00000622516 CD28P10747 220 aa7.84□□□□□ -1.15
CUX1-221ENST00000622516 CD300EQ496F6 205 aaPredicted RBP7.84□□□□□ -1.15
CUX1-221ENST00000622516 ZC2HC1BQ5TFG8 222 aa7.84□□□□□ -1.15
CUX1-221ENST00000622516 DYNLRB2Q8TF09 96 aa7.84□□□□□ -1.15
CUX1-221ENST00000622516 C4orf3Q8WVX3 66 aa7.84□□□□□ -1.15
CUX1-221ENST00000622516 VWFP04275 2813 aa7.84□□□□□ -1.15
CUX1-221ENST00000622516 RBMY1BA6NDE4 496 aaKnown RBP7.84□□□□□ -1.15
CUX1-221ENST00000622516 RBMY1EA6NEQ0 496 aaKnown RBP7.84□□□□□ -1.15
CUX1-221ENST00000622516 RBMY1DP0C7P1 496 aaKnown RBP7.84□□□□□ -1.15
CUX1-221ENST00000622516 ZNF876PQ49A33 203 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 89.8 ms