RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 KLHL30-AS1Q8NEE0 82 aa9.27□□□□□ -0.93
CIITA-212ENST00000618207 MRAP2Q96G30 205 aa9.27□□□□□ -0.93
CIITA-212ENST00000618207 DKK2Q9UBU2 259 aa9.27□□□□□ -0.93
CIITA-212ENST00000618207 A4D1N5 150 aa9.26□□□□□ -0.93
CIITA-212ENST00000618207 FAM74A4Q5TZK3 123 aa9.26□□□□□ -0.93
CIITA-212ENST00000618207 NEGR1Q7Z3B1 354 aa9.26□□□□□ -0.93
CIITA-212ENST00000618207 FAM19A4Q96LR4 140 aa9.26□□□□□ -0.93
CIITA-212ENST00000618207 FN1P02751 2386 aaKnown RBP9.26□□□□□ -0.93
CIITA-212ENST00000618207 K7EQG2 157 aa9.26□□□□□ -0.93
CIITA-212ENST00000618207 SIVA1O15304 175 aa9.26□□□□□ -0.93
CIITA-212ENST00000618207 PRM2P04554 102 aa9.26□□□□□ -0.93
CIITA-212ENST00000618207 NRACQ8N912 160 aa9.26□□□□□ -0.93
CIITA-212ENST00000618207 NXT2Q9NPJ8 142 aaKnown RBP9.25□□□□□ -0.93
CIITA-212ENST00000618207 A0A0J9YX75 114 aa9.25□□□□□ -0.93
CIITA-212ENST00000618207 DEFB131AP59861 70 aa9.25□□□□□ -0.93
CIITA-212ENST00000618207 YAE1D1Q9NRH1 226 aa9.25□□□□□ -0.93
CIITA-212ENST00000618207 MDFICQ9P1T7 246 aa9.25□□□□□ -0.93
CIITA-212ENST00000618207 AKAP9Q99996 3911 aa9.24□□□□□ -0.93
CIITA-212ENST00000618207 TMEM89A2RUT3 159 aa9.24□□□□□ -0.93
CIITA-212ENST00000618207 DNAJC9-AS1A6NH13 148 aa9.24□□□□□ -0.93
CIITA-212ENST00000618207 KLLNB2CW77 178 aa9.24□□□□□ -0.93
CIITA-212ENST00000618207 F5H697 171 aa9.24□□□□□ -0.93
CIITA-212ENST00000618207 J3QKU1 62 aa9.24□□□□□ -0.93
CIITA-212ENST00000618207 SMIM17P0DL12 118 aa9.24□□□□□ -0.93
CIITA-212ENST00000618207 PLA2G2AP14555 144 aa9.24□□□□□ -0.93
CIITA-212ENST00000618207 Q6ZSV7 163 aa9.24□□□□□ -0.93
CIITA-212ENST00000618207 DLX4Q92988 240 aaPredicted RBP9.24□□□□□ -0.93
CIITA-212ENST00000618207 ESM1Q9NQ30 184 aa9.24□□□□□ -0.93
CIITA-212ENST00000618207 KMT2BQ9UMN6 2715 aaPredicted RBP9.24□□□□□ -0.93
CIITA-212ENST00000618207 SLC25A34Q6PIV7 304 aa9.24□□□□□ -0.93
CIITA-212ENST00000618207 MYOZ3Q8TDC0 251 aa9.24□□□□□ -0.93
CIITA-212ENST00000618207 ST20Q9HBF5 79 aa9.24□□□□□ -0.93
CIITA-212ENST00000618207 SETXQ7Z333 2677 aaKnown RBP9.24□□□□□ -0.93
CIITA-212ENST00000618207 C7orf71A4D174 169 aa9.23□□□□□ -0.93
CIITA-212ENST00000618207 CD5LO43866 347 aa9.23□□□□□ -0.93
CIITA-212ENST00000618207 FCER1GP30273 86 aa9.23□□□□□ -0.93
CIITA-212ENST00000618207 MPV17L2Q567V2 206 aa9.23□□□□□ -0.93
CIITA-212ENST00000618207 Q8N8P6 123 aa9.23□□□□□ -0.93
CIITA-212ENST00000618207 FOXC2Q99958 501 aa9.23□□□□□ -0.93
CIITA-212ENST00000618207 DPH3P1Q9H4G8 78 aa9.23□□□□□ -0.93
CIITA-212ENST00000618207 TMEM61Q8N0U2 210 aa9.23□□□□□ -0.93
CIITA-212ENST00000618207 RASL10AQ92737 203 aa9.23□□□□□ -0.93
CIITA-212ENST00000618207 IGLV2-18A0A075B6J9 118 aa9.23□□□□□ -0.93
CIITA-212ENST00000618207 IGHV4-4A0A075B6R2 117 aa9.23□□□□□ -0.93
CIITA-212ENST00000618207 LINC01619G3V211 115 aa9.23□□□□□ -0.93
CIITA-212ENST00000618207 NUDT3O95989 172 aa9.23□□□□□ -0.93
CIITA-212ENST00000618207 NMUP48645 174 aa9.22□□□□□ -0.93
CIITA-212ENST00000618207 APRG1Q8IVJ8 170 aa9.22□□□□□ -0.93
CIITA-212ENST00000618207 Q8N1Y9 231 aa9.22□□□□□ -0.93
CIITA-212ENST00000618207 SMR3AQ99954 134 aa9.22□□□□□ -0.93
CIITA-212ENST00000618207 SCRT2Q9NQ03 307 aa9.22□□□□□ -0.93
CIITA-212ENST00000618207 LGALS9O00182 355 aa9.22□□□□□ -0.93
CIITA-212ENST00000618207 LAGE3Q14657 143 aa9.22□□□□□ -0.93
CIITA-212ENST00000618207 DYNLRB2Q8TF09 96 aa9.22□□□□□ -0.93
CIITA-212ENST00000618207 AP1S3Q96PC3 154 aa9.22□□□□□ -0.93
CIITA-212ENST00000618207 C2CD3Q4AC94 2353 aa9.21□□□□□ -0.93
CIITA-212ENST00000618207 DEFB125Q8N687 156 aa9.21□□□□□ -0.93
CIITA-212ENST00000618207 TTTY13Q9BZ97 58 aa9.21□□□□□ -0.93
CIITA-212ENST00000618207 SUMO2P61956 95 aaKnown RBP9.21□□□□□ -0.94
CIITA-212ENST00000618207 OR9G4Q8NGQ1 327 aa9.21□□□□□ -0.94
CIITA-212ENST00000618207 SMIM2Q9BVW6 85 aa9.21□□□□□ -0.94
CIITA-212ENST00000618207 GAGE10A6NGK3 116 aa9.2□□□□□ -0.94
CIITA-212ENST00000618207 HSD52Q0P140 79 aa9.2□□□□□ -0.94
CIITA-212ENST00000618207 LGALS9BQ3B8N2 356 aa9.2□□□□□ -0.94
CIITA-212ENST00000618207 LGALS9CQ6DKI2 356 aa9.2□□□□□ -0.94
CIITA-212ENST00000618207 TMEM160Q9NX00 188 aa9.2□□□□□ -0.94
CIITA-212ENST00000618207 GTF2H5Q6ZYL4 71 aa9.19□□□□□ -0.94
CIITA-212ENST00000618207 IGHV3-73A0A0B4J1V6 119 aa9.19□□□□□ -0.94
CIITA-212ENST00000618207 RPL32P62910 135 aaKnown RBP9.19□□□□□ -0.94
CIITA-212ENST00000618207 CD300EQ496F6 205 aaPredicted RBP9.19□□□□□ -0.94
CIITA-212ENST00000618207 UFSP1Q6NVU6 142 aa9.19□□□□□ -0.94
CIITA-212ENST00000618207 PCP2Q8IVA1 136 aa9.19□□□□□ -0.94
CIITA-212ENST00000618207 RNF152Q8N8N0 203 aa9.19□□□□□ -0.94
CIITA-212ENST00000618207 RBMY1A1P0DJD3 496 aaKnown RBP9.18□□□□□ -0.94
CIITA-212ENST00000618207 RBMY1CP0DJD4 496 aa9.18□□□□□ -0.94
CIITA-212ENST00000618207 CD28P10747 220 aa9.18□□□□□ -0.94
CIITA-212ENST00000618207 RBMY1FQ15415 496 aaKnown RBP9.18□□□□□ -0.94
CIITA-212ENST00000618207 Q8N2B8 174 aa9.18□□□□□ -0.94
CIITA-212ENST00000618207 IGHV1OR15-1A0A075B7D0 117 aa9.18□□□□□ -0.94
CIITA-212ENST00000618207 TRAV8-6A0A0B4J262 113 aa9.18□□□□□ -0.94
CIITA-212ENST00000618207 GAGE12HA6NDE8 117 aa9.18□□□□□ -0.94
CIITA-212ENST00000618207 ZNF56Q15929 161 aa9.18□□□□□ -0.94
CIITA-212ENST00000618207 GTSCR1Q86UQ5 136 aa9.18□□□□□ -0.94
CIITA-212ENST00000618207 SMIM20Q8N5G0 67 aa9.18□□□□□ -0.94
CIITA-212ENST00000618207 C4orf3Q8WVX3 66 aa9.18□□□□□ -0.94
CIITA-212ENST00000618207 CITED2Q99967 270 aaPredicted RBP9.18□□□□□ -0.94
CIITA-212ENST00000618207 MRPL35Q9NZE8 188 aaKnown RBP9.18□□□□□ -0.94
CIITA-212ENST00000618207 PEMTQ9UBM1 199 aa9.18□□□□□ -0.94
CIITA-212ENST00000618207 IGHV3-16A0A0C4DH30 117 aa9.17□□□□□ -0.94
CIITA-212ENST00000618207 COX8AP10176 69 aa9.17□□□□□ -0.94
CIITA-212ENST00000618207 FOXI2Q6ZQN5 318 aa9.17□□□□□ -0.94
CIITA-212ENST00000618207 ZNF256Q9Y2P7 627 aaPredicted RBP9.17□□□□□ -0.94
CIITA-212ENST00000618207 KRTAP1-1Q07627 177 aa9.17□□□□□ -0.94
CIITA-212ENST00000618207 SUMO4Q6EEV6 95 aa9.17□□□□□ -0.94
CIITA-212ENST00000618207 AMTNQ6UX39 209 aa9.17□□□□□ -0.94
CIITA-212ENST00000618207 RAX2Q96IS3 184 aa9.17□□□□□ -0.94
CIITA-212ENST00000618207 VCX2Q9H322 139 aa9.17□□□□□ -0.94
CIITA-212ENST00000618207 IGKV2D-26A0A0A0MRZ7 120 aa9.16□□□□□ -0.94
CIITA-212ENST00000618207 DUSP14O95147 198 aaKnown RBP9.16□□□□□ -0.94
CIITA-212ENST00000618207 ZNF876PQ49A33 203 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms