RNA–Protein interactions for RNA: ENST00000617641.4

PCDHGC3-205, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGC3, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-205ENST00000617641 C9orf85Q96MD7 179 aa12.79□□□□□ -0.36
PCDHGC3-205ENST00000617641 JPT2Q9H910 190 aa12.79□□□□□ -0.36
PCDHGC3-205ENST00000617641 SETXQ7Z333 2677 aaKnown RBP12.78□□□□□ -0.36
PCDHGC3-205ENST00000617641 IGLV2-18A0A075B6J9 118 aa12.78□□□□□ -0.36
PCDHGC3-205ENST00000617641 LINC01546A6NGU7 62 aa12.78□□□□□ -0.36
PCDHGC3-205ENST00000617641 SNHG12Q9BXW3 62 aa12.78□□□□□ -0.36
PCDHGC3-205ENST00000617641 TRAV25A0A0B4J276 109 aa12.78□□□□□ -0.36
PCDHGC3-205ENST00000617641 CFAP161Q6P656 301 aa12.78□□□□□ -0.36
PCDHGC3-205ENST00000617641 PET117Q6UWS5 81 aa12.78□□□□□ -0.36
PCDHGC3-205ENST00000617641 Q8N8P6 123 aa12.78□□□□□ -0.36
PCDHGC3-205ENST00000617641 ODF3L2Q3SX64 289 aa12.77□□□□□ -0.36
PCDHGC3-205ENST00000617641 ZNF705AQ6ZN79 300 aaPredicted RBP12.77□□□□□ -0.36
PCDHGC3-205ENST00000617641 RASL10AQ92737 203 aa12.77□□□□□ -0.36
PCDHGC3-205ENST00000617641 C20orf202A1L168 122 aa12.77□□□□□ -0.37
PCDHGC3-205ENST00000617641 KIF25-AS1Q9Y6Z4 181 aa12.77□□□□□ -0.37
PCDHGC3-205ENST00000617641 KRTAP10-3P60369 221 aa12.76□□□□□ -0.37
PCDHGC3-205ENST00000617641 RPL39LQ96EH5 51 aaKnown RBP12.76□□□□□ -0.37
PCDHGC3-205ENST00000617641 PMCHL2Q9BQD1 86 aa12.76□□□□□ -0.37
PCDHGC3-205ENST00000617641 TRAV9-2A0A087WT02 112 aa12.76□□□□□ -0.37
PCDHGC3-205ENST00000617641 M0R143 59 aa12.76□□□□□ -0.37
PCDHGC3-205ENST00000617641 A0A087WWL8 130 aa12.75□□□□□ -0.37
PCDHGC3-205ENST00000617641 SAP30O75446 220 aa12.75□□□□□ -0.37
PCDHGC3-205ENST00000617641 HTN1P15515 57 aa12.75□□□□□ -0.37
PCDHGC3-205ENST00000617641 LINC00315P59091 139 aa12.75□□□□□ -0.37
PCDHGC3-205ENST00000617641 DEFB125Q8N687 156 aa12.75□□□□□ -0.37
PCDHGC3-205ENST00000617641 CBY3A6NI87 242 aa12.74□□□□□ -0.37
PCDHGC3-205ENST00000617641 SMIM17P0DL12 118 aa12.74□□□□□ -0.37
PCDHGC3-205ENST00000617641 LINC01545Q5VT33 79 aa12.74□□□□□ -0.37
PCDHGC3-205ENST00000617641 MIEN1Q9BRT3 115 aa12.74□□□□□ -0.37
PCDHGC3-205ENST00000617641 FCER1GP30273 86 aa12.74□□□□□ -0.37
PCDHGC3-205ENST00000617641 NIPBLQ6KC79 2804 aaeCLIP12.74□□□□□ -0.37
PCDHGC3-205ENST00000617641 TRGV11A0A075B6L2 103 aa12.73□□□□□ -0.37
PCDHGC3-205ENST00000617641 POM121L12Q8N7R1 296 aa12.73□□□□□ -0.37
PCDHGC3-205ENST00000617641 TMEM158Q8WZ71 300 aa12.73□□□□□ -0.37
PCDHGC3-205ENST00000617641 SMIM2Q9BVW6 85 aa12.73□□□□□ -0.37
PCDHGC3-205ENST00000617641 PRM2P04554 102 aa12.73□□□□□ -0.37
PCDHGC3-205ENST00000617641 IFI27L1Q96BM0 104 aa12.73□□□□□ -0.37
PCDHGC3-205ENST00000617641 C18orf15Q96N68 181 aa12.73□□□□□ -0.37
PCDHGC3-205ENST00000617641 IGLL1P15814 213 aa12.72□□□□□ -0.37
PCDHGC3-205ENST00000617641 SUMO2P61956 95 aaKnown RBP12.72□□□□□ -0.37
PCDHGC3-205ENST00000617641 SYT8Q8NBV8 401 aa12.72□□□□□ -0.37
PCDHGC3-205ENST00000617641 NSD1Q96L73 2696 aaPredicted RBP12.72□□□□□ -0.37
PCDHGC3-205ENST00000617641 hDV102S1A0JD36 115 aa12.72□□□□□ -0.37
PCDHGC3-205ENST00000617641 HIVEP1P15822 2718 aa12.72□□□□□ -0.37
PCDHGC3-205ENST00000617641 OR11H12B2RN74 326 aa12.71□□□□□ -0.37
PCDHGC3-205ENST00000617641 IGLC3P0DOY3 106 aa12.71□□□□□ -0.37
PCDHGC3-205ENST00000617641 LAGE3Q14657 143 aa12.71□□□□□ -0.37
PCDHGC3-205ENST00000617641 FAM74A4Q5TZK3 123 aa12.71□□□□□ -0.37
PCDHGC3-205ENST00000617641 RNASE8Q8TDE3 154 aaKnown RBP12.71□□□□□ -0.37
PCDHGC3-205ENST00000617641 SUMO4Q6EEV6 95 aa12.71□□□□□ -0.38
PCDHGC3-205ENST00000617641 C20orf78Q9BR46 151 aa12.71□□□□□ -0.38
PCDHGC3-205ENST00000617641 F5H697 171 aa12.7□□□□□ -0.38
PCDHGC3-205ENST00000617641 STHQ8IWL8 128 aa12.7□□□□□ -0.38
PCDHGC3-205ENST00000617641 FN1P02751 2386 aaKnown RBP12.7□□□□□ -0.38
PCDHGC3-205ENST00000617641 ZNF876PQ49A33 203 aa12.7□□□□□ -0.38
PCDHGC3-205ENST00000617641 NDUFA11Q86Y39 141 aa12.7□□□□□ -0.38
PCDHGC3-205ENST00000617641 IGLV1-51P01701 117 aa12.69□□□□□ -0.38
PCDHGC3-205ENST00000617641 XCL2Q9UBD3 114 aa12.68□□□□□ -0.38
PCDHGC3-205ENST00000617641 INSP01308 110 aa12.68□□□□□ -0.38
PCDHGC3-205ENST00000617641 CRYGDP07320 174 aa12.68□□□□□ -0.38
PCDHGC3-205ENST00000617641 CLUHP3Q96NS8 147 aa12.68□□□□□ -0.38
PCDHGC3-205ENST00000617641 LINC01587Q99440 93 aa12.68□□□□□ -0.38
PCDHGC3-205ENST00000617641 UQCR10Q9UDW1 63 aa12.68□□□□□ -0.38
PCDHGC3-205ENST00000617641 LGALS9BQ3B8N2 356 aa12.67□□□□□ -0.38
PCDHGC3-205ENST00000617641 LGALS9CQ6DKI2 356 aa12.67□□□□□ -0.38
PCDHGC3-205ENST00000617641 TRPT1Q86TN4 253 aaKnown RBP12.67□□□□□ -0.38
PCDHGC3-205ENST00000617641 NUDT3O95989 172 aa12.67□□□□□ -0.38
PCDHGC3-205ENST00000617641 PPP1R17O96001 155 aa12.67□□□□□ -0.38
PCDHGC3-205ENST00000617641 NEGR1Q7Z3B1 354 aa12.67□□□□□ -0.38
PCDHGC3-205ENST00000617641 CSTL1Q9H114 145 aa12.67□□□□□ -0.38
PCDHGC3-205ENST00000617641 ZNF56Q15929 161 aa12.66□□□□□ -0.38
PCDHGC3-205ENST00000617641 WFDC10AQ9H1F0 79 aa12.66□□□□□ -0.38
PCDHGC3-205ENST00000617641 C2CD3Q4AC94 2353 aa12.65□□□□□ -0.38
PCDHGC3-205ENST00000617641 CRLF1O75462 422 aa12.65□□□□□ -0.38
PCDHGC3-205ENST00000617641 PF4P02776 101 aa12.65□□□□□ -0.38
PCDHGC3-205ENST00000617641 Q6ZN92 141 aa12.65□□□□□ -0.38
PCDHGC3-205ENST00000617641 ST20Q9HBF5 79 aa12.65□□□□□ -0.38
PCDHGC3-205ENST00000617641 ZNF415Q09FC8 603 aa12.65□□□□□ -0.39
PCDHGC3-205ENST00000617641 ORMDL2Q53FV1 153 aa12.64□□□□□ -0.39
PCDHGC3-205ENST00000617641 DKK2Q9UBU2 259 aa12.64□□□□□ -0.39
PCDHGC3-205ENST00000617641 MRPL52Q86TS9 123 aaKnown RBP12.63□□□□□ -0.39
PCDHGC3-205ENST00000617641 DEFB104AQ8WTQ1 72 aa12.63□□□□□ -0.39
PCDHGC3-205ENST00000617641 LINC00467Q9BRT7 94 aa12.63□□□□□ -0.39
PCDHGC3-205ENST00000617641 TP73-AS1Q9UF72 201 aa12.63□□□□□ -0.39
PCDHGC3-205ENST00000617641 TMEM238C9JI98 176 aa12.63□□□□□ -0.39
PCDHGC3-205ENST00000617641 M0QY20 66 aa12.63□□□□□ -0.39
PCDHGC3-205ENST00000617641 PRSS1P07477 247 aa12.63□□□□□ -0.39
PCDHGC3-205ENST00000617641 BEAN1Q3B7T3 259 aa12.63□□□□□ -0.39
PCDHGC3-205ENST00000617641 LINC00482Q8N8I6 264 aa12.63□□□□□ -0.39
PCDHGC3-205ENST00000617641 C11orf72Q8NBR9 251 aa12.63□□□□□ -0.39
PCDHGC3-205ENST00000617641 IGHV3OR16-12A0A075B7B8 117 aa12.62□□□□□ -0.39
PCDHGC3-205ENST00000617641 M0R2P5 195 aa12.62□□□□□ -0.39
PCDHGC3-205ENST00000617641 ATP5LO75964 103 aa12.62□□□□□ -0.39
PCDHGC3-205ENST00000617641 MORN3Q6PF18 240 aaPredicted RBP12.62□□□□□ -0.39
PCDHGC3-205ENST00000617641 C1orf158Q8N1D5 194 aa12.62□□□□□ -0.39
PCDHGC3-205ENST00000617641 C19orf73Q9NVV2 129 aa12.62□□□□□ -0.39
PCDHGC3-205ENST00000617641 HNRNPA3P51991 378 aaKnown RBP12.62□□□□□ -0.39
PCDHGC3-205ENST00000617641 POLR2KP53803 58 aaKnown RBP12.62□□□□□ -0.39
PCDHGC3-205ENST00000617641 CMC4P56277 68 aaPredicted RBP12.62□□□□□ -0.39
PCDHGC3-205ENST00000617641 K7EMI3 77 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms