RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ZFP36P26651 326 aaKnown RBP10.84□□□□□ -0.67
CPSF1-212ENST00000616140 C16orf54Q6UWD8 224 aa10.84□□□□□ -0.67
CPSF1-212ENST00000616140 Q71RC1 249 aaPredicted RBP10.84□□□□□ -0.67
CPSF1-212ENST00000616140 FANCD2OSQ96PS1 177 aa10.84□□□□□ -0.67
CPSF1-212ENST00000616140 IGKV1D-37A0A075B6S9 117 aa10.84□□□□□ -0.67
CPSF1-212ENST00000616140 SH2D6Q7Z4S9 175 aa10.84□□□□□ -0.67
CPSF1-212ENST00000616140 UBE2DNLQ8IWF7 75 aa10.84□□□□□ -0.67
CPSF1-212ENST00000616140 C3orf56Q8N813 242 aa10.84□□□□□ -0.67
CPSF1-212ENST00000616140 NOP10Q9NPE3 64 aaKnown RBP10.84□□□□□ -0.67
CPSF1-212ENST00000616140 TEX48A0A1B0GUV7 120 aa10.83□□□□□ -0.68
CPSF1-212ENST00000616140 ADORA2A-AS1P86434 159 aa10.83□□□□□ -0.68
CPSF1-212ENST00000616140 SUMO4Q6EEV6 95 aa10.83□□□□□ -0.68
CPSF1-212ENST00000616140 APRG1Q8IVJ8 170 aa10.83□□□□□ -0.68
CPSF1-212ENST00000616140 SCRT2Q9NQ03 307 aa10.83□□□□□ -0.68
CPSF1-212ENST00000616140 CLPSL2Q6UWE3 100 aa10.83□□□□□ -0.68
CPSF1-212ENST00000616140 J3QKU1 62 aa10.83□□□□□ -0.68
CPSF1-212ENST00000616140 FXYD2P54710 66 aa10.83□□□□□ -0.68
CPSF1-212ENST00000616140 C5orf56Q8N8D9 126 aa10.83□□□□□ -0.68
CPSF1-212ENST00000616140 Q9H8V8 135 aa10.83□□□□□ -0.68
CPSF1-212ENST00000616140 ANGP03950 147 aaKnown RBP10.82□□□□□ -0.68
CPSF1-212ENST00000616140 SLURP1P55000 103 aa10.82□□□□□ -0.68
CPSF1-212ENST00000616140 C19orf71A6NCJ1 209 aa10.82□□□□□ -0.68
CPSF1-212ENST00000616140 ZFP2Q6ZN57 461 aa10.82□□□□□ -0.68
CPSF1-212ENST00000616140 IGLL5B9A064 214 aa10.81□□□□□ -0.68
CPSF1-212ENST00000616140 PSCAO43653 123 aa10.81□□□□□ -0.68
CPSF1-212ENST00000616140 SPTBN4Q9H254 2564 aa10.81□□□□□ -0.68
CPSF1-212ENST00000616140 UTRNP46939 3433 aa10.81□□□□□ -0.68
CPSF1-212ENST00000616140 RPL39P62891 51 aaKnown RBP10.81□□□□□ -0.68
CPSF1-212ENST00000616140 CTRLP40313 264 aa10.81□□□□□ -0.68
CPSF1-212ENST00000616140 LINC00322Q6ZN03 302 aaPredicted RBP10.81□□□□□ -0.68
CPSF1-212ENST00000616140 TNRC6AQ8NDV7 1962 aaKnown RBP10.81□□□□□ -0.68
CPSF1-212ENST00000616140 C22orf34Q6ZV56 151 aa10.8□□□□□ -0.68
CPSF1-212ENST00000616140 CCL24O00175 119 aa10.8□□□□□ -0.68
CPSF1-212ENST00000616140 C9orf153Q5TBE3 101 aa10.8□□□□□ -0.68
CPSF1-212ENST00000616140 NRGNQ92686 78 aa10.8□□□□□ -0.68
CPSF1-212ENST00000616140 DSCAMO60469 2012 aa10.8□□□□□ -0.68
CPSF1-212ENST00000616140 IGLV2-8P01709 118 aa10.8□□□□□ -0.68
CPSF1-212ENST00000616140 ZNF106Q9H2Y7 1883 aaKnown RBP10.8□□□□□ -0.68
CPSF1-212ENST00000616140 TRAV13-2A0A0B4J235 113 aa10.79□□□□□ -0.68
CPSF1-212ENST00000616140 XCL1P47992 114 aa10.79□□□□□ -0.68
CPSF1-212ENST00000616140 C1orf229Q6ZS94 237 aaPredicted RBP10.79□□□□□ -0.68
CPSF1-212ENST00000616140 Q8N1Y9 231 aa10.79□□□□□ -0.68
CPSF1-212ENST00000616140 Q8NA96 180 aa10.79□□□□□ -0.68
CPSF1-212ENST00000616140 A4D1N5 150 aa10.79□□□□□ -0.68
CPSF1-212ENST00000616140 C2orf70A6NJV1 201 aa10.79□□□□□ -0.68
CPSF1-212ENST00000616140 F8WEM9 126 aa10.79□□□□□ -0.68
CPSF1-212ENST00000616140 HAMPP81172 84 aa10.79□□□□□ -0.68
CPSF1-212ENST00000616140 C9orf47Q6ZRZ4 202 aa10.79□□□□□ -0.68
CPSF1-212ENST00000616140 C10orf105Q8TEF2 133 aa10.79□□□□□ -0.68
CPSF1-212ENST00000616140 RNASE8Q8TDE3 154 aaKnown RBP10.79□□□□□ -0.68
CPSF1-212ENST00000616140 C5orf38Q86SI9 138 aa10.78□□□□□ -0.68
CPSF1-212ENST00000616140 SPANXA1Q9NS26 97 aa10.78□□□□□ -0.68
CPSF1-212ENST00000616140 UNQ9165/PRO28630Q6UXU0 137 aa10.78□□□□□ -0.68
CPSF1-212ENST00000616140 ARHGAP32A7KAX9 2087 aa10.78□□□□□ -0.68
CPSF1-212ENST00000616140 TAX1BP3O14907 124 aa10.78□□□□□ -0.68
CPSF1-212ENST00000616140 BOD1L2Q8IYS8 172 aa10.78□□□□□ -0.68
CPSF1-212ENST00000616140 UBL5Q9BZL1 73 aa10.78□□□□□ -0.68
CPSF1-212ENST00000616140 LRRK2Q5S007 2527 aa10.77□□□□□ -0.68
CPSF1-212ENST00000616140 LOXL1Q08397 574 aaPredicted RBP10.77□□□□□ -0.68
CPSF1-212ENST00000616140 A0A0J9YY99 117 aa10.77□□□□□ -0.69
CPSF1-212ENST00000616140 A0A1B0GXF2 115 aa10.77□□□□□ -0.69
CPSF1-212ENST00000616140 LINC00574Q9H8X3 128 aa10.77□□□□□ -0.69
CPSF1-212ENST00000616140 HCFC1P51610 2035 aa10.77□□□□□ -0.69
CPSF1-212ENST00000616140 ODF1Q14990 250 aa10.77□□□□□ -0.69
CPSF1-212ENST00000616140 KIAA1549Q9HCM3 1950 aa10.77□□□□□ -0.69
CPSF1-212ENST00000616140 TMEM131Q92545 1883 aa10.76□□□□□ -0.69
CPSF1-212ENST00000616140 TINCRA0A1B0GVN0 87 aa10.76□□□□□ -0.69
CPSF1-212ENST00000616140 CRLF1O75462 422 aa10.76□□□□□ -0.69
CPSF1-212ENST00000616140 WFDC2Q14508 124 aa10.76□□□□□ -0.69
CPSF1-212ENST00000616140 APOC4P55056 127 aa10.76□□□□□ -0.69
CPSF1-212ENST00000616140 ZNF80P51504 273 aaPredicted RBP10.76□□□□□ -0.69
CPSF1-212ENST00000616140 C15orf53Q8NAA6 179 aa10.76□□□□□ -0.69
CPSF1-212ENST00000616140 IGHV4OR15-8A0A075B7B6 117 aa10.75□□□□□ -0.69
CPSF1-212ENST00000616140 A0A087WW49 117 aa10.75□□□□□ -0.69
CPSF1-212ENST00000616140 RS1O15537 224 aa10.75□□□□□ -0.69
CPSF1-212ENST00000616140 TRBV12-3P01733 135 aa10.75□□□□□ -0.69
CPSF1-212ENST00000616140 FBXL19-AS1Q494R0 122 aa10.75□□□□□ -0.69
CPSF1-212ENST00000616140 GDF5OSQ5U4N7 250 aa10.75□□□□□ -0.69
CPSF1-212ENST00000616140 SIRPDQ9H106 197 aa10.75□□□□□ -0.69
CPSF1-212ENST00000616140 IGHG2P01859 326 aa10.75□□□□□ -0.69
CPSF1-212ENST00000616140 MUSTN1Q8IVN3 82 aa10.75□□□□□ -0.69
CPSF1-212ENST00000616140 SLC25A29Q8N8R3 303 aa10.75□□□□□ -0.69
CPSF1-212ENST00000616140 MLST8Q9BVC4 326 aa10.75□□□□□ -0.69
CPSF1-212ENST00000616140 TRBV6-1A0A0K0K1D8 114 aa10.74□□□□□ -0.69
CPSF1-212ENST00000616140 IFITM1P13164 125 aa10.74□□□□□ -0.69
CPSF1-212ENST00000616140 HIGD1BQ9P298 99 aa10.74□□□□□ -0.69
CPSF1-212ENST00000616140 TRAV12-1A0A0B4J245 112 aa10.74□□□□□ -0.69
CPSF1-212ENST00000616140 LTBP2Q14767 1821 aa10.74□□□□□ -0.69
CPSF1-212ENST00000616140 MTORP42345 2549 aa10.74□□□□□ -0.69
CPSF1-212ENST00000616140 C11orf86A6NJI1 115 aa10.74□□□□□ -0.69
CPSF1-212ENST00000616140 NKAPP1Q8N9T2 125 aa10.74□□□□□ -0.69
CPSF1-212ENST00000616140 BAALCQ8WXS3 180 aa10.74□□□□□ -0.69
CPSF1-212ENST00000616140 K7EMT4 169 aa10.74□□□□□ -0.69
CPSF1-212ENST00000616140 TRAV25A0A0B4J276 109 aa10.73□□□□□ -0.69
CPSF1-212ENST00000616140 CRYBA4P53673 196 aa10.73□□□□□ -0.69
CPSF1-212ENST00000616140 EIF4EBP1Q13541 118 aaPredicted RBP10.73□□□□□ -0.69
CPSF1-212ENST00000616140 KIAA1549LQ6ZVL6 1849 aa10.73□□□□□ -0.69
CPSF1-212ENST00000616140 LINC01548A6NM66 108 aa10.73□□□□□ -0.69
CPSF1-212ENST00000616140 PRB1P04280 392 aa10.73□□□□□ -0.69
CPSF1-212ENST00000616140 Q6ZQT7 251 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 149.3 ms