RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 CDPF1Q6NVV7 123 aa12.72□□□□□ -0.37
PNKP-213ENST00000599543 JPT2Q9H910 190 aa12.72□□□□□ -0.37
PNKP-213ENST00000599543 MSRB1Q9NZV6 116 aa12.72□□□□□ -0.37
PNKP-213ENST00000599543 MUC21A0A0G2JKD1 596 aa12.71□□□□□ -0.37
PNKP-213ENST00000599543 MUC21A0A140T8X8 626 aa12.71□□□□□ -0.37
PNKP-213ENST00000599543 SH2D6Q7Z4S9 175 aa12.71□□□□□ -0.37
PNKP-213ENST00000599543 DNAH10OSP0CZ25 163 aa12.7□□□□□ -0.38
PNKP-213ENST00000599543 GZMBP10144 247 aa12.7□□□□□ -0.38
PNKP-213ENST00000599543 SSTP61278 116 aa12.7□□□□□ -0.38
PNKP-213ENST00000599543 SRSF3P84103 164 aaKnown RBP12.7□□□□□ -0.38
PNKP-213ENST00000599543 LOC100131303A0A0U1RQF7 123 aa12.69□□□□□ -0.38
PNKP-213ENST00000599543 C9JQL5 133 aa12.69□□□□□ -0.38
PNKP-213ENST00000599543 K7EN84 100 aa12.69□□□□□ -0.38
PNKP-213ENST00000599543 SRP19P09132 144 aaKnown RBP12.69□□□□□ -0.38
PNKP-213ENST00000599543 FUSP35637 526 aaKnown RBP eCLIP12.69□□□□□ -0.38
PNKP-213ENST00000599543 CFAP126Q5VTH2 177 aa12.69□□□□□ -0.38
PNKP-213ENST00000599543 DMRTA1Q5VZB9 504 aa12.69□□□□□ -0.38
PNKP-213ENST00000599543 C10orf126Q8N4M7 172 aa12.69□□□□□ -0.38
PNKP-213ENST00000599543 OCC1Q8TAD7 63 aa12.69□□□□□ -0.38
PNKP-213ENST00000599543 IL36BQ9NZH7 164 aa12.69□□□□□ -0.38
PNKP-213ENST00000599543 A0A087WTM6 91 aa12.68□□□□□ -0.38
PNKP-213ENST00000599543 TMEM250H0YL14 139 aa12.68□□□□□ -0.38
PNKP-213ENST00000599543 M0R381 172 aa12.68□□□□□ -0.38
PNKP-213ENST00000599543 RS1O15537 224 aa12.68□□□□□ -0.38
PNKP-213ENST00000599543 CRYGDP07320 174 aa12.68□□□□□ -0.38
PNKP-213ENST00000599543 GATA1P15976 413 aaPredicted RBP12.68□□□□□ -0.38
PNKP-213ENST00000599543 OR2D3Q8NGH3 330 aa12.68□□□□□ -0.38
PNKP-213ENST00000599543 DAZAP1Q96EP5 407 aaKnown RBP12.68□□□□□ -0.38
PNKP-213ENST00000599543 C19orf71A6NCJ1 209 aa12.67□□□□□ -0.38
PNKP-213ENST00000599543 DNLZQ5SXM8 178 aa12.67□□□□□ -0.38
PNKP-213ENST00000599543 SAMD10Q9BYL1 202 aa12.67□□□□□ -0.38
PNKP-213ENST00000599543 PHLDA3Q9Y5J5 127 aa12.67□□□□□ -0.38
PNKP-213ENST00000599543 OR10AG1Q8NH19 301 aa12.66□□□□□ -0.38
PNKP-213ENST00000599543 RNASE7Q9H1E1 156 aaKnown RBP12.66□□□□□ -0.38
PNKP-213ENST00000599543 TIRAPP58753 221 aa12.65□□□□□ -0.38
PNKP-213ENST00000599543 Q6ZSN1 163 aa12.65□□□□□ -0.38
PNKP-213ENST00000599543 NUDT10Q8NFP7 164 aa12.65□□□□□ -0.38
PNKP-213ENST00000599543 NUDT11Q96G61 164 aa12.65□□□□□ -0.38
PNKP-213ENST00000599543 SMIM7Q9BQ49 75 aa12.65□□□□□ -0.38
PNKP-213ENST00000599543 PRADC1Q9BSG0 188 aa12.65□□□□□ -0.38
PNKP-213ENST00000599543 TPPP3Q9BW30 176 aa12.65□□□□□ -0.38
PNKP-213ENST00000599543 A0A087WWL8 130 aa12.64□□□□□ -0.39
PNKP-213ENST00000599543 IGHV3-38A0A0C4DH36 116 aa12.64□□□□□ -0.39
PNKP-213ENST00000599543 CIDEAO60543 219 aa12.64□□□□□ -0.39
PNKP-213ENST00000599543 P01737 135 aa12.64□□□□□ -0.39
PNKP-213ENST00000599543 IFITM2Q01629 132 aa12.64□□□□□ -0.39
PNKP-213ENST00000599543 RHOHQ15669 191 aa12.64□□□□□ -0.39
PNKP-213ENST00000599543 SLC25A29Q8N8R3 303 aa12.64□□□□□ -0.39
PNKP-213ENST00000599543 PTH2Q96A98 100 aa12.64□□□□□ -0.39
PNKP-213ENST00000599543 SMIM12Q96EX1 92 aa12.64□□□□□ -0.39
PNKP-213ENST00000599543 ZNF727A8MUV8 499 aa12.63□□□□□ -0.39
PNKP-213ENST00000599543 EPM2AB3EWF7 344 aa12.63□□□□□ -0.39
PNKP-213ENST00000599543 PSCAO43653 123 aa12.63□□□□□ -0.39
PNKP-213ENST00000599543 FAM74A4Q5TZK3 123 aa12.63□□□□□ -0.39
PNKP-213ENST00000599543 SYT8Q8NBV8 401 aa12.63□□□□□ -0.39
PNKP-213ENST00000599543 TRAV8-6A0A0B4J262 113 aa12.62□□□□□ -0.39
PNKP-213ENST00000599543 TRBV6-4A0A1B0GX49 114 aa12.62□□□□□ -0.39
PNKP-213ENST00000599543 LINC01556Q5JQF7 62 aa12.62□□□□□ -0.39
PNKP-213ENST00000599543 OR10J3Q5JRS4 329 aa12.62□□□□□ -0.39
PNKP-213ENST00000599543 A8MWV9 139 aa12.61□□□□□ -0.39
PNKP-213ENST00000599543 CXCL1P09341 107 aa12.61□□□□□ -0.39
PNKP-213ENST00000599543 ZFP82Q8N141 532 aa12.61□□□□□ -0.39
PNKP-213ENST00000599543 BIN3Q9NQY0 253 aa12.61□□□□□ -0.39
PNKP-213ENST00000599543 SNAI2O43623 268 aa12.6□□□□□ -0.39
PNKP-213ENST00000599543 RAB14P61106 215 aa12.6□□□□□ -0.39
PNKP-213ENST00000599543 PEA15Q15121 130 aa12.6□□□□□ -0.39
PNKP-213ENST00000599543 SPANXN1Q5VSR9 72 aa12.6□□□□□ -0.39
PNKP-213ENST00000599543 FER1L6-AS1Q8NA97 138 aa12.6□□□□□ -0.39
PNKP-213ENST00000599543 RPP21Q9H633 154 aaKnown RBP12.6□□□□□ -0.39
PNKP-213ENST00000599543 Q9UF83 564 aa12.6□□□□□ -0.39
PNKP-213ENST00000599543 IGLC6P0CF74 106 aa12.59□□□□□ -0.39
PNKP-213ENST00000599543 XGP55808 180 aa12.59□□□□□ -0.39
PNKP-213ENST00000599543 KRTAP10-1P60331 282 aa12.59□□□□□ -0.39
PNKP-213ENST00000599543 RPS20P60866 119 aaKnown RBP12.59□□□□□ -0.39
PNKP-213ENST00000599543 UFSP1Q6NVU6 142 aa12.59□□□□□ -0.39
PNKP-213ENST00000599543 LINC01551Q86U37 167 aa12.59□□□□□ -0.39
PNKP-213ENST00000599543 C14orf178Q8N769 122 aaPredicted RBP12.59□□□□□ -0.39
PNKP-213ENST00000599543 SFRP2Q96HF1 295 aa12.59□□□□□ -0.39
PNKP-213ENST00000599543 SSBP4Q9BWG4 385 aaPredicted RBP12.59□□□□□ -0.39
PNKP-213ENST00000599543 GATCO43716 136 aaKnown RBP12.58□□□□□ -0.4
PNKP-213ENST00000599543 OR5AL1P0C617 328 aa12.58□□□□□ -0.4
PNKP-213ENST00000599543 GCSHP23434 173 aa12.58□□□□□ -0.4
PNKP-213ENST00000599543 LELP1Q5T871 98 aa12.58□□□□□ -0.4
PNKP-213ENST00000599543 Q9HAA7 133 aa12.58□□□□□ -0.4
PNKP-213ENST00000599543 IBA57-AS1B1ANH7 110 aa12.57□□□□□ -0.4
PNKP-213ENST00000599543 PIK3CD-AS1Q5SR53 167 aa12.57□□□□□ -0.4
PNKP-213ENST00000599543 LYZL1Q6UWQ5 148 aa12.57□□□□□ -0.4
PNKP-213ENST00000599543 GTSF1LQ9H1H1 148 aa12.57□□□□□ -0.4
PNKP-213ENST00000599543 IGLV5-52A0A0A0MRZ9 124 aa12.56□□□□□ -0.4
PNKP-213ENST00000599543 NDUFS6O75380 124 aaKnown RBP12.56□□□□□ -0.4
PNKP-213ENST00000599543 IGHV3-30P01768 117 aa12.56□□□□□ -0.4
PNKP-213ENST00000599543 IGHV3-33P01772 117 aa12.56□□□□□ -0.4
PNKP-213ENST00000599543 IGHV3-30-3P0DP02 117 aa12.56□□□□□ -0.4
PNKP-213ENST00000599543 IGHV3-30-5P0DP03 117 aa12.56□□□□□ -0.4
PNKP-213ENST00000599543 ZFP2Q6ZN57 461 aa12.56□□□□□ -0.4
PNKP-213ENST00000599543 ATP6V0E2Q8NHE4 81 aa12.56□□□□□ -0.4
PNKP-213ENST00000599543 FRZBQ92765 325 aa12.56□□□□□ -0.4
PNKP-213ENST00000599543 XKRY2A2RUG3 117 aa12.55□□□□□ -0.4
PNKP-213ENST00000599543 GAGE12JA6NER3 117 aa12.55□□□□□ -0.4
PNKP-213ENST00000599543 GAGE1Q13065 139 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms