RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 HAMPP81172 84 aa6.53□□□□□ -1.36
VRK3-216ENST00000599342 RGS21Q2M5E4 152 aa6.53□□□□□ -1.36
VRK3-216ENST00000599342 LINC01559Q495D7 138 aa6.53□□□□□ -1.36
VRK3-216ENST00000599342 UFSP1Q6NVU6 142 aa6.53□□□□□ -1.36
VRK3-216ENST00000599342 COX8CQ7Z4L0 72 aa6.53□□□□□ -1.36
VRK3-216ENST00000599342 DAZ4Q86SG3 579 aaKnown RBP6.53□□□□□ -1.36
VRK3-216ENST00000599342 ZFP82Q8N141 532 aa6.53□□□□□ -1.36
VRK3-216ENST00000599342 Q8N3U1 123 aa6.53□□□□□ -1.36
VRK3-216ENST00000599342 DAZ3Q9NR90 486 aaKnown RBP6.53□□□□□ -1.36
VRK3-216ENST00000599342 A0A087WWL8 130 aa6.52□□□□□ -1.37
VRK3-216ENST00000599342 TMSB15BA0A087X1C1 80 aa6.52□□□□□ -1.37
VRK3-216ENST00000599342 TRBV6-1A0A0K0K1D8 114 aa6.52□□□□□ -1.37
VRK3-216ENST00000599342 G3V3Q6 166 aa6.52□□□□□ -1.37
VRK3-216ENST00000599342 LTAP01374 205 aa6.52□□□□□ -1.37
VRK3-216ENST00000599342 ZNF674Q2M3X9 581 aa6.52□□□□□ -1.37
VRK3-216ENST00000599342 KCNIP4Q6PIL6 250 aa6.52□□□□□ -1.37
VRK3-216ENST00000599342 RMI2Q96E14 147 aa6.52□□□□□ -1.37
VRK3-216ENST00000599342 SFRP2Q96HF1 295 aa6.52□□□□□ -1.37
VRK3-216ENST00000599342 CYTL1Q9NRR1 136 aa6.52□□□□□ -1.37
VRK3-216ENST00000599342 COX11Q9Y6N1 276 aa6.52□□□□□ -1.37
VRK3-216ENST00000599342 PFDN1O60925 122 aa6.51□□□□□ -1.37
VRK3-216ENST00000599342 RPL36AP83881 106 aaKnown RBP6.51□□□□□ -1.37
VRK3-216ENST00000599342 RPL36ALQ969Q0 106 aaKnown RBP6.51□□□□□ -1.37
VRK3-216ENST00000599342 Q9UF83 564 aa6.51□□□□□ -1.37
VRK3-216ENST00000599342 FAT1Q14517 4588 aa6.5□□□□□ -1.37
VRK3-216ENST00000599342 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.5□□□□□ -1.37
VRK3-216ENST00000599342 A0A087WX48 190 aa6.5□□□□□ -1.37
VRK3-216ENST00000599342 TRBV10-1A0A0K0K1A3 114 aa6.5□□□□□ -1.37
VRK3-216ENST00000599342 UMAD1C9J7I0 102 aa6.5□□□□□ -1.37
VRK3-216ENST00000599342 SMLR1H3BR10 107 aa6.5□□□□□ -1.37
VRK3-216ENST00000599342 LECT2O14960 151 aa6.5□□□□□ -1.37
VRK3-216ENST00000599342 PAGE4O60829 102 aa6.5□□□□□ -1.37
VRK3-216ENST00000599342 C1QBP02746 253 aa6.5□□□□□ -1.37
VRK3-216ENST00000599342 S100A9P06702 114 aaKnown RBP6.5□□□□□ -1.37
VRK3-216ENST00000599342 ZNF345Q14585 488 aa6.5□□□□□ -1.37
VRK3-216ENST00000599342 ELOBQ15370 118 aa6.5□□□□□ -1.37
VRK3-216ENST00000599342 FAM213BQ8TBF2 198 aa6.5□□□□□ -1.37
VRK3-216ENST00000599342 SFT2D1Q8WV19 159 aa6.5□□□□□ -1.37
VRK3-216ENST00000599342 IGKV2D-24A0A075B6R9 120 aa6.49□□□□□ -1.37
VRK3-216ENST00000599342 A0A1B0GV50 99 aa6.49□□□□□ -1.37
VRK3-216ENST00000599342 KANTRA0A1W2PQU2 76 aa6.49□□□□□ -1.37
VRK3-216ENST00000599342 WFDC2Q14508 124 aa6.49□□□□□ -1.37
VRK3-216ENST00000599342 ZNF56Q15929 161 aa6.49□□□□□ -1.37
VRK3-216ENST00000599342 NIT1Q86X76 327 aa6.49□□□□□ -1.37
VRK3-216ENST00000599342 KCNRGQ8N5I3 272 aa6.49□□□□□ -1.37
VRK3-216ENST00000599342 CHCHD7Q9BUK0 85 aa6.49□□□□□ -1.37
VRK3-216ENST00000599342 ZNF471Q9BX82 626 aaPredicted RBP6.49□□□□□ -1.37
VRK3-216ENST00000599342 KLK12Q9UKR0 248 aa6.49□□□□□ -1.37
VRK3-216ENST00000599342 TRBV7-3A0A075B6L6 115 aa6.48□□□□□ -1.37
VRK3-216ENST00000599342 SCO2A0A1W2PP80 73 aa6.48□□□□□ -1.37
VRK3-216ENST00000599342 BAGE2Q86Y30 109 aa6.48□□□□□ -1.37
VRK3-216ENST00000599342 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.48□□□□□ -1.37
VRK3-216ENST00000599342 BAALCQ8WXS3 180 aa6.48□□□□□ -1.37
VRK3-216ENST00000599342 UBE2WQ96B02 151 aa6.48□□□□□ -1.37
VRK3-216ENST00000599342 FAM30AQ9NZY2 134 aa6.48□□□□□ -1.37
VRK3-216ENST00000599342 A0A0D9SG52 128 aa6.47□□□□□ -1.37
VRK3-216ENST00000599342 RBFOX3A6NFN3 312 aa6.47□□□□□ -1.37
VRK3-216ENST00000599342 TMEM262E9PQX1 116 aa6.47□□□□□ -1.37
VRK3-216ENST00000599342 BCL2L11O43521 198 aa6.47□□□□□ -1.37
VRK3-216ENST00000599342 CXCL1P09341 107 aa6.47□□□□□ -1.37
VRK3-216ENST00000599342 RAB4BP61018 213 aa6.47□□□□□ -1.37
VRK3-216ENST00000599342 UBE2D3P61077 147 aa6.47□□□□□ -1.37
VRK3-216ENST00000599342 UBE2D2P62837 147 aa6.47□□□□□ -1.37
VRK3-216ENST00000599342 EIF5AP63241 154 aaKnown RBP6.47□□□□□ -1.37
VRK3-216ENST00000599342 RPL19P84098 196 aaKnown RBP6.47□□□□□ -1.37
VRK3-216ENST00000599342 Q0VG73 95 aa6.47□□□□□ -1.37
VRK3-216ENST00000599342 SPANXN1Q5VSR9 72 aa6.47□□□□□ -1.37
VRK3-216ENST00000599342 PRR27Q6MZM9 219 aa6.47□□□□□ -1.37
VRK3-216ENST00000599342 Q8N976 141 aa6.47□□□□□ -1.37
VRK3-216ENST00000599342 OR10AG1Q8NH19 301 aa6.47□□□□□ -1.37
VRK3-216ENST00000599342 MBD3L1Q8WWY6 194 aa6.47□□□□□ -1.37
VRK3-216ENST00000599342 TRBV6-8A0A0A6YYG3 113 aa6.46□□□□□ -1.38
VRK3-216ENST00000599342 HMSDA8MTL9 139 aa6.46□□□□□ -1.38
VRK3-216ENST00000599342 F5H697 171 aa6.46□□□□□ -1.38
VRK3-216ENST00000599342 CRPP02741 224 aa6.46□□□□□ -1.38
VRK3-216ENST00000599342 PLA2G1BP04054 148 aaKnown RBP6.46□□□□□ -1.38
VRK3-216ENST00000599342 H2AFB1P0C5Y9 115 aa6.46□□□□□ -1.38
VRK3-216ENST00000599342 Q6ZSA8 131 aa6.46□□□□□ -1.38
VRK3-216ENST00000599342 NEXN-AS1Q8NBZ9 246 aa6.46□□□□□ -1.38
VRK3-216ENST00000599342 OR10G8Q8NGN5 311 aa6.46□□□□□ -1.38
VRK3-216ENST00000599342 C1orf43Q9BWL3 253 aa6.46□□□□□ -1.38
VRK3-216ENST00000599342 SNAI2O43623 268 aa6.45□□□□□ -1.38
VRK3-216ENST00000599342 OR5AL1P0C617 328 aa6.45□□□□□ -1.38
VRK3-216ENST00000599342 SMIM17P0DL12 118 aa6.45□□□□□ -1.38
VRK3-216ENST00000599342 PKIAP61925 76 aa6.45□□□□□ -1.38
VRK3-216ENST00000599342 DNAJC30Q96LL9 226 aa6.45□□□□□ -1.38
VRK3-216ENST00000599342 MLST8Q9BVC4 326 aa6.45□□□□□ -1.38
VRK3-216ENST00000599342 MANBALQ9NQG1 85 aa6.45□□□□□ -1.38
VRK3-216ENST00000599342 MUC21A0A0G2JKD1 596 aa6.44□□□□□ -1.38
VRK3-216ENST00000599342 MUC21A0A140T8X8 626 aa6.44□□□□□ -1.38
VRK3-216ENST00000599342 ANGP03950 147 aaKnown RBP6.44□□□□□ -1.38
VRK3-216ENST00000599342 RPL35P42766 123 aaKnown RBP6.44□□□□□ -1.38
VRK3-216ENST00000599342 SSTP61278 116 aa6.44□□□□□ -1.38
VRK3-216ENST00000599342 LINC01620Q4KN68 170 aa6.44□□□□□ -1.38
VRK3-216ENST00000599342 C14orf177Q52M58 125 aa6.44□□□□□ -1.38
VRK3-216ENST00000599342 TMEM97Q5BJF2 176 aa6.44□□□□□ -1.38
VRK3-216ENST00000599342 ATRAIDQ6UW56 229 aa6.44□□□□□ -1.38
VRK3-216ENST00000599342 TMUB2Q71RG4 321 aa6.44□□□□□ -1.38
VRK3-216ENST00000599342 LINC00528Q8N1L1 170 aa6.44□□□□□ -1.38
VRK3-216ENST00000599342 C15orf54Q8N8G6 183 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms