RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 Q71RC1 249 aaPredicted RBP9.51□□□□□ -0.89
LIG1-207ENST00000594759 NEXN-AS1Q8NBZ9 246 aa9.51□□□□□ -0.89
LIG1-207ENST00000594759 PKIGQ9Y2B9 76 aa9.51□□□□□ -0.89
LIG1-207ENST00000594759 MBD3L4A6NDZ8 208 aaPredicted RBP9.51□□□□□ -0.89
LIG1-207ENST00000594759 MBD3L3A6NE82 208 aaPredicted RBP9.51□□□□□ -0.89
LIG1-207ENST00000594759 MBD3L5A6NJ08 208 aaPredicted RBP9.51□□□□□ -0.89
LIG1-207ENST00000594759 LEPROTO15243 131 aa9.51□□□□□ -0.89
LIG1-207ENST00000594759 NHLRC4P0CG21 123 aaPredicted RBP9.51□□□□□ -0.89
LIG1-207ENST00000594759 P0DMU3 169 aa9.51□□□□□ -0.89
LIG1-207ENST00000594759 FAM231AP0DMU4 169 aa9.51□□□□□ -0.89
LIG1-207ENST00000594759 FAM231CP0DMU5 169 aa9.51□□□□□ -0.89
LIG1-207ENST00000594759 HRCT1Q6UXD1 115 aa9.51□□□□□ -0.89
LIG1-207ENST00000594759 MBD3L2Q8NHZ7 208 aaPredicted RBP9.51□□□□□ -0.89
LIG1-207ENST00000594759 IGHV1-69DA0A0B4J2H0 117 aa9.51□□□□□ -0.89
LIG1-207ENST00000594759 LY6G5BQ8NDX9 201 aa9.5□□□□□ -0.89
LIG1-207ENST00000594759 IGHV3OR16-10A0A075B7F0 116 aa9.5□□□□□ -0.89
LIG1-207ENST00000594759 IGKV3-20P01619 116 aa9.5□□□□□ -0.89
LIG1-207ENST00000594759 COX7CP15954 63 aa9.5□□□□□ -0.89
LIG1-207ENST00000594759 UBE2E1P51965 193 aa9.5□□□□□ -0.89
LIG1-207ENST00000594759 RITA1Q96K30 269 aa9.5□□□□□ -0.89
LIG1-207ENST00000594759 AGPAT4-IT1Q9H0P7 198 aa9.5□□□□□ -0.89
LIG1-207ENST00000594759 B9A039 149 aa9.5□□□□□ -0.89
LIG1-207ENST00000594759 EYSQ5T1H1 3165 aa9.5□□□□□ -0.89
LIG1-207ENST00000594759 NAV2Q8IVL1 2488 aa9.5□□□□□ -0.89
LIG1-207ENST00000594759 IGHV3-30P01768 117 aa9.5□□□□□ -0.89
LIG1-207ENST00000594759 IGHV3-30-5P0DP03 117 aa9.5□□□□□ -0.89
LIG1-207ENST00000594759 SRSF2Q01130 221 aaKnown RBP9.5□□□□□ -0.89
LIG1-207ENST00000594759 RHOHQ15669 191 aa9.5□□□□□ -0.89
LIG1-207ENST00000594759 C19orf54Q5BKX5 351 aa9.5□□□□□ -0.89
LIG1-207ENST00000594759 RNASE6Q93091 150 aaKnown RBP9.5□□□□□ -0.89
LIG1-207ENST00000594759 ARHGAP32A7KAX9 2087 aa9.49□□□□□ -0.89
LIG1-207ENST00000594759 M0R1W7 72 aa9.49□□□□□ -0.89
LIG1-207ENST00000594759 FHL3Q13643 280 aa9.49□□□□□ -0.89
LIG1-207ENST00000594759 LYPD2Q6UXB3 125 aa9.49□□□□□ -0.89
LIG1-207ENST00000594759 LINC01548A6NM66 108 aa9.49□□□□□ -0.89
LIG1-207ENST00000594759 TRIAP1O43715 76 aa9.49□□□□□ -0.89
LIG1-207ENST00000594759 S100A7L2Q5SY68 101 aa9.49□□□□□ -0.89
LIG1-207ENST00000594759 CRYGBP07316 175 aa9.48□□□□□ -0.89
LIG1-207ENST00000594759 RPL39P62891 51 aaKnown RBP9.48□□□□□ -0.89
LIG1-207ENST00000594759 TMEM243Q9BU79 118 aa9.48□□□□□ -0.89
LIG1-207ENST00000594759 FAM215AQ9Y5M1 114 aa9.48□□□□□ -0.89
LIG1-207ENST00000594759 I3L2K1 104 aa9.48□□□□□ -0.89
LIG1-207ENST00000594759 USP9XQ93008 2570 aaPredicted RBP9.48□□□□□ -0.89
LIG1-207ENST00000594759 RBMY1BA6NDE4 496 aaKnown RBP9.48□□□□□ -0.89
LIG1-207ENST00000594759 RBMY1EA6NEQ0 496 aaKnown RBP9.48□□□□□ -0.89
LIG1-207ENST00000594759 RBMY1DP0C7P1 496 aaKnown RBP9.48□□□□□ -0.89
LIG1-207ENST00000594759 RBMY1A1P0DJD3 496 aaKnown RBP9.48□□□□□ -0.89
LIG1-207ENST00000594759 RBMY1CP0DJD4 496 aa9.48□□□□□ -0.89
LIG1-207ENST00000594759 RBMY1FQ15415 496 aaKnown RBP9.48□□□□□ -0.89
LIG1-207ENST00000594759 Q6ZS46 218 aa9.48□□□□□ -0.89
LIG1-207ENST00000594759 RASL10AQ92737 203 aa9.48□□□□□ -0.89
LIG1-207ENST00000594759 LINC00526Q96FQ7 95 aa9.48□□□□□ -0.89
LIG1-207ENST00000594759 LINC00477Q96M19 166 aa9.48□□□□□ -0.89
LIG1-207ENST00000594759 EXPH5Q8NEV8 1989 aa9.47□□□□□ -0.89
LIG1-207ENST00000594759 C15orf32Q32M92 178 aa9.47□□□□□ -0.89
LIG1-207ENST00000594759 RNF5Q99942 180 aa9.47□□□□□ -0.89
LIG1-207ENST00000594759 NCKAP5O14513 1909 aa9.47□□□□□ -0.89
LIG1-207ENST00000594759 TEX36Q5VZQ5 186 aa9.47□□□□□ -0.89
LIG1-207ENST00000594759 MDFICQ9P1T7 246 aa9.47□□□□□ -0.89
LIG1-207ENST00000594759 SOCS3O14543 225 aa9.46□□□□□ -0.89
LIG1-207ENST00000594759 CGB3P0DN86 165 aa9.46□□□□□ -0.89
LIG1-207ENST00000594759 CGB7P0DN87 165 aa9.46□□□□□ -0.89
LIG1-207ENST00000594759 IGFBPL1Q8WX77 278 aa9.46□□□□□ -0.89
LIG1-207ENST00000594759 A0A0J9YXV3 536 aa9.46□□□□□ -0.89
LIG1-207ENST00000594759 TRBV30A0A0K0K1B3 111 aa9.46□□□□□ -0.89
LIG1-207ENST00000594759 BUB1B-PAK6H3BSN5 160 aa9.46□□□□□ -0.89
LIG1-207ENST00000594759 OVOL1O14753 267 aa9.46□□□□□ -0.89
LIG1-207ENST00000594759 TMEM258P61165 79 aa9.46□□□□□ -0.89
LIG1-207ENST00000594759 NDPQ00604 133 aa9.46□□□□□ -0.89
LIG1-207ENST00000594759 K7EIM0 57 aa9.46□□□□□ -0.9
LIG1-207ENST00000594759 CRPP02741 224 aa9.46□□□□□ -0.9
LIG1-207ENST00000594759 ZNF22P17026 224 aaPredicted RBP9.46□□□□□ -0.9
LIG1-207ENST00000594759 LINC00311Q8N616 119 aa9.46□□□□□ -0.9
LIG1-207ENST00000594759 LRRK2Q5S007 2527 aa9.46□□□□□ -0.9
LIG1-207ENST00000594759 WNK1Q9H4A3 2382 aa9.45□□□□□ -0.9
LIG1-207ENST00000594759 PRAC2D3DTV9 90 aa9.45□□□□□ -0.9
LIG1-207ENST00000594759 RBM3P98179 157 aaKnown RBP9.45□□□□□ -0.9
LIG1-207ENST00000594759 ODF3Q96PU9 254 aa9.45□□□□□ -0.9
LIG1-207ENST00000594759 C2CD3Q4AC94 2353 aa9.45□□□□□ -0.9
LIG1-207ENST00000594759 MRAPQ8TCY5 172 aa9.45□□□□□ -0.9
LIG1-207ENST00000594759 NACAE9PAV3 2078 aa9.44□□□□□ -0.9
LIG1-207ENST00000594759 LRP4O75096 1905 aa9.44□□□□□ -0.9
LIG1-207ENST00000594759 FAM240AA0A1B0GVK7 77 aa9.44□□□□□ -0.9
LIG1-207ENST00000594759 IGLV2-23P01705 113 aa9.44□□□□□ -0.9
LIG1-207ENST00000594759 DSCR8Q96T75 97 aa9.44□□□□□ -0.9
LIG1-207ENST00000594759 TOMM7Q9P0U1 55 aa9.44□□□□□ -0.9
LIG1-207ENST00000594759 GATA4P43694 442 aa9.44□□□□□ -0.9
LIG1-207ENST00000594759 C9orf139Q6ZV77 190 aa9.44□□□□□ -0.9
LIG1-207ENST00000594759 C8orf31Q8N9H6 132 aa9.44□□□□□ -0.9
LIG1-207ENST00000594759 DKK4Q9UBT3 224 aa9.44□□□□□ -0.9
LIG1-207ENST00000594759 SPEGQ15772 3267 aa9.44□□□□□ -0.9
LIG1-207ENST00000594759 H7C423 109 aa9.44□□□□□ -0.9
LIG1-207ENST00000594759 RNF152Q8N8N0 203 aa9.44□□□□□ -0.9
LIG1-207ENST00000594759 K7ENP7 123 aa9.43□□□□□ -0.9
LIG1-207ENST00000594759 C10orf105Q8TEF2 133 aa9.43□□□□□ -0.9
LIG1-207ENST00000594759 TMEM178BH3BS89 294 aa9.43□□□□□ -0.9
LIG1-207ENST00000594759 PRIMA1Q86XR5 153 aa9.43□□□□□ -0.9
LIG1-207ENST00000594759 MOB4Q9Y3A3 225 aa9.43□□□□□ -0.9
LIG1-207ENST00000594759 NBL1P41271 181 aa9.43□□□□□ -0.9
LIG1-207ENST00000594759 SDIM1Q6ZPB5 146 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms