RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 RPS20P60866 119 aaKnown RBP8.54□□□□□ -1.04
UPF1-203ENST00000594504 ZFP2Q6ZN57 461 aa8.54□□□□□ -1.04
UPF1-203ENST00000594504 ZFP82Q8N141 532 aa8.54□□□□□ -1.04
UPF1-203ENST00000594504 OR2D3Q8NGH3 330 aa8.54□□□□□ -1.04
UPF1-203ENST00000594504 XKRY2A2RUG3 117 aa8.53□□□□□ -1.04
UPF1-203ENST00000594504 K7EN84 100 aa8.53□□□□□ -1.04
UPF1-203ENST00000594504 M0R381 172 aa8.53□□□□□ -1.04
UPF1-203ENST00000594504 SNAI2O43623 268 aa8.53□□□□□ -1.04
UPF1-203ENST00000594504 OR5AL1P0C617 328 aa8.53□□□□□ -1.04
UPF1-203ENST00000594504 BTF3P20290 206 aaKnown RBP8.53□□□□□ -1.04
UPF1-203ENST00000594504 MRPL23Q16540 153 aaKnown RBP8.53□□□□□ -1.04
UPF1-203ENST00000594504 Q6ZRN7 208 aaPredicted RBP8.53□□□□□ -1.04
UPF1-203ENST00000594504 OCC1Q8TAD7 63 aa8.53□□□□□ -1.04
UPF1-203ENST00000594504 SMIM7Q9BQ49 75 aa8.53□□□□□ -1.04
UPF1-203ENST00000594504 SSBP4Q9BWG4 385 aaPredicted RBP8.53□□□□□ -1.04
UPF1-203ENST00000594504 LY96Q9Y6Y9 160 aa8.53□□□□□ -1.04
UPF1-203ENST00000594504 IGHV3-73A0A0B4J1V6 119 aa8.52□□□□□ -1.05
UPF1-203ENST00000594504 TRBV6-4A0A1B0GX49 114 aa8.52□□□□□ -1.05
UPF1-203ENST00000594504 RHODO00212 210 aa8.52□□□□□ -1.05
UPF1-203ENST00000594504 SIVA1O15304 175 aa8.52□□□□□ -1.05
UPF1-203ENST00000594504 NXPH4O95158 308 aa8.52□□□□□ -1.05
UPF1-203ENST00000594504 GYPEP15421 78 aa8.52□□□□□ -1.05
UPF1-203ENST00000594504 OR10AG1Q8NH19 301 aa8.52□□□□□ -1.05
UPF1-203ENST00000594504 SFRP2Q96HF1 295 aa8.52□□□□□ -1.05
UPF1-203ENST00000594504 PRADC1Q9BSG0 188 aa8.52□□□□□ -1.05
UPF1-203ENST00000594504 SMDT1Q9H4I9 107 aa8.52□□□□□ -1.05
UPF1-203ENST00000594504 JPT2Q9H910 190 aa8.52□□□□□ -1.05
UPF1-203ENST00000594504 ZNF727A8MUV8 499 aa8.51□□□□□ -1.05
UPF1-203ENST00000594504 K7EQD1 137 aa8.51□□□□□ -1.05
UPF1-203ENST00000594504 SRIP30626 198 aa8.51□□□□□ -1.05
UPF1-203ENST00000594504 RAB14P61106 215 aa8.51□□□□□ -1.05
UPF1-203ENST00000594504 PEA15Q15121 130 aa8.51□□□□□ -1.05
UPF1-203ENST00000594504 RHOHQ15669 191 aa8.51□□□□□ -1.05
UPF1-203ENST00000594504 UFSP1Q6NVU6 142 aa8.51□□□□□ -1.05
UPF1-203ENST00000594504 LYPD5Q6UWN5 251 aa8.51□□□□□ -1.05
UPF1-203ENST00000594504 NEGR1Q7Z3B1 354 aa8.51□□□□□ -1.05
UPF1-203ENST00000594504 SLC25A29Q8N8R3 303 aa8.51□□□□□ -1.05
UPF1-203ENST00000594504 FER1L6-AS1Q8NA97 138 aa8.51□□□□□ -1.05
UPF1-203ENST00000594504 NUDT10Q8NFP7 164 aa8.51□□□□□ -1.05
UPF1-203ENST00000594504 NUDT11Q96G61 164 aa8.51□□□□□ -1.05
UPF1-203ENST00000594504 IGLC6P0CF74 106 aa8.5□□□□□ -1.05
UPF1-203ENST00000594504 GZMBP10144 247 aa8.5□□□□□ -1.05
UPF1-203ENST00000594504 FAM74A3Q4VXF1 159 aa8.5□□□□□ -1.05
UPF1-203ENST00000594504 SPANXN1Q5VSR9 72 aa8.5□□□□□ -1.05
UPF1-203ENST00000594504 SH2D6Q7Z4S9 175 aa8.5□□□□□ -1.05
UPF1-203ENST00000594504 SAMD10Q9BYL1 202 aa8.5□□□□□ -1.05
UPF1-203ENST00000594504 RNASE7Q9H1E1 156 aaKnown RBP8.5□□□□□ -1.05
UPF1-203ENST00000594504 RPP21Q9H633 154 aaKnown RBP8.5□□□□□ -1.05
UPF1-203ENST00000594504 APOBP04114 4563 aaKnown RBP8.5□□□□□ -1.05
UPF1-203ENST00000594504 A0A087WWL8 130 aa8.49□□□□□ -1.05
UPF1-203ENST00000594504 LOC100131303A0A0U1RQF7 123 aa8.49□□□□□ -1.05
UPF1-203ENST00000594504 F2Z2F3 143 aa8.49□□□□□ -1.05
UPF1-203ENST00000594504 CRYGDP07320 174 aa8.49□□□□□ -1.05
UPF1-203ENST00000594504 SRSF3P84103 164 aaKnown RBP8.49□□□□□ -1.05
UPF1-203ENST00000594504 FAM74A4Q5TZK3 123 aa8.49□□□□□ -1.05
UPF1-203ENST00000594504 FAM231DQ6ZW35 169 aa8.49□□□□□ -1.05
UPF1-203ENST00000594504 LINC01551Q86U37 167 aa8.49□□□□□ -1.05
UPF1-203ENST00000594504 TPPP3Q9BW30 176 aa8.49□□□□□ -1.05
UPF1-203ENST00000594504 MUC21A0A0G2JKD1 596 aa8.48□□□□□ -1.05
UPF1-203ENST00000594504 MUC21A0A140T8X8 626 aa8.48□□□□□ -1.05
UPF1-203ENST00000594504 C9JQL5 133 aa8.48□□□□□ -1.05
UPF1-203ENST00000594504 Q6ZSN1 163 aa8.48□□□□□ -1.05
UPF1-203ENST00000594504 DNAH5Q8TE73 4624 aa8.47□□□□□ -1.05
UPF1-203ENST00000594504 GATCO43716 136 aaKnown RBP8.47□□□□□ -1.05
UPF1-203ENST00000594504 DNAH10OSP0CZ25 163 aa8.47□□□□□ -1.05
UPF1-203ENST00000594504 XGP55808 180 aa8.47□□□□□ -1.05
UPF1-203ENST00000594504 ERVFC1-1P60608 527 aa8.47□□□□□ -1.05
UPF1-203ENST00000594504 CACNG7P62955 275 aa8.47□□□□□ -1.05
UPF1-203ENST00000594504 TMEM241Q24JQ0 296 aa8.47□□□□□ -1.05
UPF1-203ENST00000594504 CLLU1Q5K131 121 aa8.47□□□□□ -1.05
UPF1-203ENST00000594504 AP1S3Q96PC3 154 aa8.47□□□□□ -1.05
UPF1-203ENST00000594504 CTRLP40313 264 aa8.46□□□□□ -1.06
UPF1-203ENST00000594504 SSTP61278 116 aa8.46□□□□□ -1.06
UPF1-203ENST00000594504 IFITM2Q01629 132 aa8.46□□□□□ -1.06
UPF1-203ENST00000594504 CT83Q5H943 113 aa8.46□□□□□ -1.06
UPF1-203ENST00000594504 WDR73Q6P4I2 378 aa8.46□□□□□ -1.06
UPF1-203ENST00000594504 LYZL1Q6UWQ5 148 aa8.46□□□□□ -1.06
UPF1-203ENST00000594504 WFDC10BQ8IUB3 73 aa8.46□□□□□ -1.06
UPF1-203ENST00000594504 PGPEP1Q9NXJ5 209 aa8.46□□□□□ -1.06
UPF1-203ENST00000594504 NAT8Q9UHE5 227 aa8.46□□□□□ -1.06
UPF1-203ENST00000594504 A8MWL6 223 aa8.45□□□□□ -1.06
UPF1-203ENST00000594504 EPM2AB3EWF7 344 aa8.45□□□□□ -1.06
UPF1-203ENST00000594504 SMIM17P0DL12 118 aa8.45□□□□□ -1.06
UPF1-203ENST00000594504 TIRAPP58753 221 aa8.45□□□□□ -1.06
UPF1-203ENST00000594504 KRTAP10-1P60331 282 aa8.45□□□□□ -1.06
UPF1-203ENST00000594504 RAB4BP61018 213 aa8.45□□□□□ -1.06
UPF1-203ENST00000594504 C14orf178Q8N769 122 aaPredicted RBP8.45□□□□□ -1.06
UPF1-203ENST00000594504 CNFNQ9BYD5 112 aa8.45□□□□□ -1.06
UPF1-203ENST00000594504 OSTCQ9NRP0 149 aa8.45□□□□□ -1.06
UPF1-203ENST00000594504 A0A087WTM6 91 aa8.44□□□□□ -1.06
UPF1-203ENST00000594504 TRBV10-1A0A0K0K1A3 114 aa8.44□□□□□ -1.06
UPF1-203ENST00000594504 GAGE12JA6NER3 117 aa8.44□□□□□ -1.06
UPF1-203ENST00000594504 EREGO14944 169 aa8.44□□□□□ -1.06
UPF1-203ENST00000594504 TRGC1P0CF51 173 aa8.44□□□□□ -1.06
UPF1-203ENST00000594504 LINC00694P0DN24 101 aa8.44□□□□□ -1.06
UPF1-203ENST00000594504 RPL23P62829 140 aaKnown RBP8.44□□□□□ -1.06
UPF1-203ENST00000594504 GAGE1Q13065 139 aa8.44□□□□□ -1.06
UPF1-203ENST00000594504 GAGE4Q13068 117 aa8.44□□□□□ -1.06
UPF1-203ENST00000594504 GAGE5Q13069 117 aa8.44□□□□□ -1.06
UPF1-203ENST00000594504 ZNF56Q15929 161 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms